Name: Acetivibrio thermocellus LQR1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2730

Type strain:

Species: Acetivibrio thermocellus

Strain Designation: LQR1

Culture col. no.: DSM 2360, JCM 9323, ATCC 35609

Strain history: E. Uematsu <-- ATCC 35609 <-- J. G. Zeikus LQR1.

NCBI tax ID(s): 572545 (strain), 1515 (species)

SI-ID 41192

ATCC 35609, DSM 2360, JCM 9323

Special Collections

DSMZ
JCM

Other strains from Acetivibrio thermocellus

Section

When using BacDive for research please cite our paper

Acetivibrio thermocellus LQR1 is an anaerobe, thermophilic bacterium that produces alcohol and was isolated from isolated from contaminated culture of Clostridium thermocellum, strain LQ8 .

alcohol production
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Acetivibrio*
	Species	**Acetivibrio thermocellus**
	Full Scientific Name (LPSN)	Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019

	Synonym	Hungateiclostridium thermocellum
	Synonym	"Ruminiclostridium* thermocellum"*
	Synonym	Clostridium thermocellum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1050]

Culture medium

CLOSTRIDIUM (GS) MEDIUM (DSMZ Medium 255)

[Ref.: #1050]

Culture medium growth

[Ref.: #1050]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1050]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1050]			growth	60 °C
[Ref.: #67770]			growth	60 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1050]	Oxygen tolerance	anaerobe
[Ref.: #125438]	Oxygen tolerance	anaerobe Confidence in %95.236
[Ref.: #125439]	Oxygen tolerance	anaerobe Confidence in %99.5

[Ref.: #1050]	Name of produced compound	cellulase
[Ref.: #1050]	Name of produced compound	ethanol

	Metabolite production	Metabolite	Production
[Ref.: #67770]		ethanol ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1050]	Sample type/isolated from	isolated from contaminated culture of Clostridium thermocellum, strain LQ8 (R.Y. Quinn)
[Ref.: #1050]	Host species	Clostridium thermocellum
[Ref.: #1050]	Geographic location (country and/or sea, region)	Iowa
[Ref.: #1050]	Country	USA
[Ref.: #1050]	Country ISO 3 Code	USA
[Ref.: #1050]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Laboratory contamination
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Contaminant
#Engineered	#Laboratory	#Lab enrichment
#Host	#Microbial	#Bacteria

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB588017 (>99% sequence identity) for Acetivibrio thermocellus subclade from Microbeatlas

Aquatic Samples	1005
Soil Samples	2753
Animal Samples	2787
Plant Samples	816
Total Samples	7361

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1050]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium thermocellum gene for 16S ribosomal RNA, partial sequence, strain: JCM 9323	AB588017	1489	GenBank ENA	1515 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acetivibrio thermocellus DSM 2360 LQRI	GCA_001692755	complete	GenBank ENA	572545 tax ID	*
[Ref.: #66792]	Clostridium thermocellum DSM 2360	572545.3	wgs	PATRIC	572545 tax ID	*
[Ref.: #66792]	Ruminiclostridium thermocellum DSM 2360 strain LQRI	572545.4	complete	PATRIC	572545 tax ID	*
[Ref.: #66792]	Hungateiclostridium thermocellum DSM 2360	645058753	draft	JGI IMG/M	572545 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acetivibrio thermocellus DSM 2360 LQRI NCBI: GCA_001692755.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	57.414	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	95.236	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	97.944	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	83.939	no
[Ref.: #125438]	thermophile	thermophilicⓘ	yes	68.059	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	77.705	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acetivibrio thermocellus DSM 2360 LQRI NCBI: GCA_001692755
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	81.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	81.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	79
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	99.5

Availability in culture collections External links

[Ref.: #1050]

Culture collection no.

DSM 2360, JCM 9323, ATCC 35609

[Ref.: #72258]

SI-ID 41192

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hungateiclostridium mesophilum sp. nov., a mesophilic, cellulolytic and spore-forming bacterium isolated from a biogas fermenter fed with maize silage.	Rettenmaier R, Gerbaulet M, Liebl W, Zverlov VV	Int J Syst Evol Microbiol	10.1099/ijsem.0.003663	2019	*
Metabolism	Electrically enhanced ethanol fermentation by Clostridium thermocellum and Saccharomyces cerevisiae.	Shin HS, Zeikus JG, Jain MK	Appl Microbiol Biotechnol	10.1007/s00253-001-0923-2	2002	*

References

#1050

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2360

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72258

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41192.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Acetivibrio thermocellus DSM 2360 LQRI

Acetivibrio thermocellus DSM 2360 LQRI

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