Strain identifier

BacDive ID: 2730

Type strain: No

Species: Acetivibrio thermocellus

Strain Designation: LQR1

Culture col. no.: DSM 2360

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1050

BacDive-ID: 2730

DSM-Number: 2360

keywords: alcohol production, thermophilic, anaerobe, Bacteria, genome sequence

description: Acetivibrio thermocellus LQR1 is an anaerobe, thermophilic bacterium that produces alcohol and was isolated from isolated from contaminated culture of Clostridium thermocellum, strain LQ8 .

strain history: <- J. G. Zeikus, Universityof Wisconsin, Madison, USA; LQR1

doi: 10.13145/bacdive2730.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Acetivibrio
  • species: Acetivibrio thermocellus
  • full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
  • synonyms

    @refsynonym
    20215Clostridium thermocellum
    20215Hungateiclostridium thermocellum

@ref: 1050

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Hungateiclostridiaceae

genus: Acetivibrio

species: Acetivibrio thermocellus

full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019

strain designation: LQR1

type strain: no

Culture and growth conditions

culture medium

  • @ref: 1050
  • name: CLOSTRIDIUM (GS) MEDIUM (DSMZ Medium 255), with strain-specific modifications, anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium255.pdf

culture temp

  • @ref: 1050
  • growth: positive
  • type: growth
  • temperature: 60
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1050
  • oxygen tolerance: anaerobe

compound production

@refcompound
1050cellulase
1050ethanol

Isolation, sampling and environmental information

isolation

  • @ref: 1050
  • sample type: isolated from contaminated culture of Clostridium thermocellum, strain LQ8 (R.Y. Quinn)
  • host species: Clostridium thermocellum
  • geographic location: Iowa
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Contaminant
#Engineered#Laboratory#Lab enrichment
#Host#Microbial#Bacteria

Safety information

risk assessment

  • @ref: 1050
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Hungateiclostridium thermocellum DSM 2360 LQRIGCA_001692755completencbi572545
66792Hungateiclostridium thermocellum DSM 2360GCA_000175715contigncbi572545
66792Clostridium thermocellum DSM 2360572545.3wgspatric572545
66792Ruminiclostridium thermocellum DSM 2360 strain LQRI572545.4completepatric572545
66792Hungateiclostridium thermocellum DSM 2360645058753permanentimg572545

External links

@ref: 1050

culture collection no.: DSM 2360

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/157938

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1050Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2360)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2360
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)