Strain identifier
BacDive ID: 2730
Type strain: 
Species: Acetivibrio thermocellus
Strain Designation: LQR1
Culture col. no.: DSM 2360
General
@ref: 1050
BacDive-ID: 2730
DSM-Number: 2360
keywords: alcohol production, thermophilic, anaerobe, Bacteria, genome sequence
description: Acetivibrio thermocellus LQR1 is an anaerobe, thermophilic bacterium that produces alcohol and was isolated from isolated from contaminated culture of Clostridium thermocellum, strain LQ8 .
strain history: <- J. G. Zeikus, Universityof Wisconsin, Madison, USA; LQR1
doi: 10.13145/bacdive2730.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/firmicutes
- domain: Bacteria
- phylum: Firmicutes
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Acetivibrio
- species: Acetivibrio thermocellus
- full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
synonyms
@ref synonym 20215 Clostridium thermocellum 20215 Hungateiclostridium thermocellum
@ref: 1050
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Hungateiclostridiaceae
genus: Acetivibrio
species: Acetivibrio thermocellus
full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
strain designation: LQR1
type strain: no
Culture and growth conditions
culture medium
- @ref: 1050
- name: CLOSTRIDIUM (GS) MEDIUM (DSMZ Medium 255), with strain-specific modifications, anaerobic
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium255.pdf
culture temp
- @ref: 1050
- growth: positive
- type: growth
- temperature: 60
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1050
- oxygen tolerance: anaerobe
compound production
| @ref | compound |
|---|---|
| 1050 | cellulase |
| 1050 | ethanol |
Isolation, sampling and environmental information
isolation
- @ref: 1050
- sample type: isolated from contaminated culture of Clostridium thermocellum, strain LQ8 (R.Y. Quinn)
- host species: Clostridium thermocellum
- geographic location: Iowa
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | #Contaminant |
| #Engineered | #Laboratory | #Lab enrichment |
| #Host | #Microbial | #Bacteria |
Safety information
risk assessment
- @ref: 1050
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hungateiclostridium thermocellum DSM 2360 LQRI | GCA_001692755 | complete | ncbi | 572545 |
| 66792 | Hungateiclostridium thermocellum DSM 2360 | GCA_000175715 | contig | ncbi | 572545 |
| 66792 | Clostridium thermocellum DSM 2360 | 572545.3 | wgs | patric | 572545 |
| 66792 | Ruminiclostridium thermocellum DSM 2360 strain LQRI | 572545.4 | complete | patric | 572545 |
| 66792 | Hungateiclostridium thermocellum DSM 2360 | 645058753 | permanent | img | 572545 |
External links
@ref: 1050
culture collection no.: DSM 2360
straininfo link
- @ref: 20218
- passport: http://www.straininfo.net/strains/157938
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1050 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2360) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2360 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |