Name: Acetivibrio thermocellus LQ8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2728

Type strain:

Species: Acetivibrio thermocellus

Strain Designation: LQ8

Culture col. no.: DSM 1313

Strain history: <- J. G. Zeikus, Universityof Wisconsin, Departments of Biochemistry and Agricultural Bacteriology, Madison, USA; LQ8 <- L. Y. Quinn

NCBI tax ID(s): 637887 (strain), 1515 (species)

SI-ID 1975

LMG 6656, DSM 1313

Special Collections

Other strains from Acetivibrio thermocellus

Section

Acetivibrio thermocellus LQ8 is an anaerobe, spore-forming bacterium that produces alcohol.

alcohol production
spore-forming
anaerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Acetivibrio*
	Species	**Acetivibrio thermocellus**
	Full Scientific Name (LPSN)	Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019

	Synonym	"Ruminiclostridium* thermocellum"*
	Synonym	Clostridium thermocellum
	Synonym	Hungateiclostridium thermocellum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #511]

Culture medium

ACETIVIBRIO MEDIUM (DSMZ Medium 122)

[Ref.: #511]

Culture medium growth

[Ref.: #511]

Culture medium link

Medium recipe at MediaDive

[Ref.: #511]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #511]			growth	60 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #511]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %95.236

[Ref.: #511]

Name of produced compound

ethanol

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43410]	cellobiose ChEBI	+	degradation
[Ref.: #43410]	cellulose ChEBI	+	degradation
[Ref.: #43410]	glucose ChEBI	+	growth

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #511]	Geographic location (country and/or sea, region)	Iowa
[Ref.: #511]	Country	USA
[Ref.: #511]	Country ISO 3 Code	USA
[Ref.: #511]	Continent	North America
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #511]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acetivibrio thermocellus DSM 1313	GCA_000184925	complete	GenBank ENA	637887 tax ID	*
[Ref.: #66792]	Clostridium thermocellum DSM 1313	637887.3	complete	PATRIC	637887 tax ID	*
[Ref.: #66792]	Hungateiclostridium thermocellum strain DSM 1313	1515.11	wgs	PATRIC	1515 tax ID	*
[Ref.: #66792]	Hungateiclostridium thermocellum LQ8, DSM 1313	650377924	complete	JGI IMG/M	637887 tax ID	*
[Ref.: #66792]	Acetivibrio thermocellus DSM 1313	2825454334	draft	JGI IMG/M	1515 tax ID	*

[Ref.: #511]

GC-content

39.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acetivibrio thermocellus DSM 1313 DSM 1313 NCBI: GCA_000184925.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	66	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acetivibrio thermocellus DSM 1313 DSM 1313 NCBI: GCA_000184925.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	57.414	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	95.236	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.944	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	83.939	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	68.059	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	77.705	no

Availability in culture collections External links

[Ref.: #511]

Culture collection no.

DSM 1313

[Ref.: #72256]

SI-ID 1975

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Composition and yield of non-cellulosic and cellulosic sugars in soluble and particulate fractions during consolidated bioprocessing of poplar biomass by Clostridium thermocellum.	Biswal AK, Hengge NN, Black IM, Atmodjo MA, Mohanty SS, Ryno D, Himmel ME, Azadi P, Bomble YJ, Mohnen D	Biotechnol Biofuels Bioprod	10.1186/s13068-022-02119-9	2022	*
Biotechnology	Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targets.	Poudel S, Cope AL, O'Dell KB, Guss AM, Seo H, Trinh CT, Hettich RL	Biotechnol Biofuels	10.1186/s13068-021-01964-4	2021	*
Metabolism	Construction of lactic acid overproducing Clostridium thermocellum through enhancement of lactate dehydrogenase expression.	Mazzoli R, Olson DG, Lynd LR	Enzyme Microb Technol	10.1016/j.enzmictec.2020.109645	2020	*
Genetics	Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability.	Nakazono-Nagaoka E, Fujikawa T, Shikata A, Tachaapaikoon C, Waeonukul R, Pason P, Ratanakhanokchai K, Kosugi A	Data Brief	10.1016/j.dib.2019.104274	2019	*
Metabolism	Engineering cellulolytic bacterium Clostridium thermocellum to co-ferment cellulose- and hemicellulose-derived sugars simultaneously.	Xiong W, Reyes LH, Michener WE, Maness PC, Chou KJ	Biotechnol Bioeng	10.1002/bit.26590	2018	*
Metabolism	Overflow metabolism and growth cessation in Clostridium thermocellum DSM1313 during high cellulose loading fermentations.	Thompson RA, Trinh CT	Biotechnol Bioeng	10.1002/bit.26374	2017	*
Biotechnology	Cellulosic ethanol production via consolidated bioprocessing by a novel thermophilic anaerobic bacterium isolated from a Himalayan hot spring.	Singh N, Mathur AS, Tuli DK, Gupta RP, Barrow CJ, Puri M	Biotechnol Biofuels	10.1186/s13068-017-0756-6	2017	*
Metabolism	LacI Transcriptional Regulatory Networks in Clostridium thermocellum DSM1313.	Wilson CM, Klingeman DM, Schlachter C, Syed MH, Wu CW, Guss AM, Brown SD	Appl Environ Microbiol	10.1128/AEM.02751-16	2017	*
Phenotype	Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome.	Thompson RA, Dahal S, Garcia S, Nookaew I, Trinh CT	Biotechnol Biofuels	10.1186/s13068-016-0607-x	2016	*
Metabolism	Genetic engineering of Clostridium thermocellum DSM1313 for enhanced ethanol production.	Kannuchamy S, Mukund N, Saleena LM	BMC Biotechnol	10.1186/s12896-016-0260-2	2016	*
Enzymology	Expression and characterization of a new thermostable esterase from Clostridium thermocellum.	Zhang T, Chen H, Ni Z, Tian R, Jia J, Chen Z, Yang S	Appl Biochem Biotechnol	10.1007/s12010-015-1824-7	2015	*
Metabolism	Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways.	van der Veen D, Lo J, Brown SD, Johnson CM, Tschaplinski TJ, Martin M, Engle NL, van den Berg RA, Argyros AD, Caiazza NC, Guss AM, Lynd LR	J Ind Microbiol Biotechnol	10.1007/s10295-013-1275-5	2013	*
Genetics	Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313.	Feinberg L, Foden J, Barrett T, Davenport KW, Bruce D, Detter C, Tapia R, Han C, Lapidus A, Lucas S, Cheng JF, Pitluck S, Woyke T, Ivanova N, Mikhailova N, Land M, Hauser L, Argyros DA, Goodwin L, Hogsett D, Caiazza N	J Bacteriol	10.1128/JB.00322-11	2011	*
Stress	Role of spontaneous current oscillations during high-efficiency electrotransformation of thermophilic anaerobes.	Tyurin MV, Sullivan CR, Lynd LR	Appl Environ Microbiol	10.1128/AEM.71.12.8069-8076.2005	2005	*
Pathogenicity	Electrotransformation of Clostridium thermocellum.	Tyurin MV, Desai SG, Lynd LR	Appl Environ Microbiol	10.1128/AEM.70.2.883-890.2004	2004	*
	NMR chemical shift assignments of a module of unknown function in the cellulosomal secondary scaffoldin ScaF from Clostridium thermocellum.	Li J, Chen C, Liu YJ, Cui Q, Bayer EA, Feng Y	Biomol NMR Assign	10.1007/s12104-021-10025-8	2021	*
	CRISPR interference (CRISPRi) as transcriptional repression tool for Hungateiclostridium thermocellum DSM 1313.	Ganguly J, Martin-Pascual M, van Kranenburg R	Microb Biotechnol	10.1111/1751-7915.13516	2019	*
	Resonance assignments of a cellulosomal double-dockerin from Clostridium thermocellum.	Chen C, Yang H, Xuan J, Cui Q, Feng Y	Biomol NMR Assign	10.1007/s12104-018-9859-7	2018	*
	Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics.	Whitham JM, Moon JW, Rodriguez M Jr, Engle NL, Klingeman DM, Rydzak T, Abel MM, Tschaplinski TJ, Guss AM, Brown SD	Biotechnol Biofuels	10.1186/s13068-018-1095-y	2018	*
	Determination of the native features of the exoglucanase Cel48S from Clostridium thermocellum.	Liu YJ, Liu S, Dong S, Li R, Feng Y, Cui Q	Biotechnol Biofuels	10.1186/s13068-017-1009-4	2018	*
	How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313?	Yoav S, Barak Y, Shamshoum M, Borovok I, Lamed R, Dassa B, Hadar Y, Morag E, Bayer EA	Biotechnol Biofuels	10.1186/s13068-017-0909-7	2017	*
	Enhanced saccharification of lignocellulosic agricultural biomass and increased bioethanol titre using acclimated Clostridium thermocellum DSM1313.	Nisha M, Saranyah K, Shankar M, Saleena LM	3 Biotech	10.1007/s13205-017-0606-z	2017	*
	Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation.	Sander K, Wilson CM, Rodriguez M Jr, Klingeman DM, Rydzak T, Davison BH, Brown SD	Biotechnol Biofuels	10.1186/s13068-015-0394-9	2015	*
	Dcm methylation is detrimental to plasmid transformation in Clostridium thermocellum.	Guss AM, Olson DG, Caiazza NC, Lynd LR	Biotechnol Biofuels	10.1186/1754-6834-5-30	2012	*

References

#511	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1313

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43410

Shahar Yoav, Yoav Barak, Melina Shamshoum, Ilya Borovok, Raphael Lamed, Bareket Dassa, Yitzhak Hadar, Ely Morag and Edward A. Baye: How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313?. Biotechnol Biofuels 10: 2017 ( DOI 10.1186/s13068-017-0909-7 , PubMed 28932263 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72256

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1975.1 )

* These data were automatically processed and therefore are not curated

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Acetivibrio thermocellus DSM 1313 DSM 1313

Acetivibrio thermocellus DSM 1313 DSM 1313

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