Acetivibrio thermocellus (DSM 25991, YS)

Name: Acetivibrio thermocellus (DSM 25991, YS)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 22965

Type strain

Strain Designation YS

Culture col. no. DSM 25991 YS

NCBI tax ID(s) 1515

Special Collections DSMZ

Links

Acetivibrio thermocellus YS is an anaerobe, thermophilic prokaryote that was isolated from hot spring soil sample.

anaerobe thermophilic genome sequence

Name and taxonomic classification

SI-ID 397875

DSM 25991

@ref 20215

Last LPSN update 2025-12-16 09:52:32

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Acetivibrio

Species Acetivibrio thermocellus

Full scientific name Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019

Synonyms (3)

Clostridium thermocellum
"Ruminiclostridium thermocellum"
Hungateiclostridium thermocellum

BacDive ID	Other strains from **Acetivibrio thermocellus** (6)	Type strain
2729	A. thermocellus DSM 1237, ATCC 27405, JCM 9322, NCIMB 10682, ... (type strain)
2728	A. thermocellus LQ8, DSM 1313
2730	A. thermocellus LQR1, DSM 2360, JCM 9323, ATCC 35609
2731	A. thermocellus JW 20, DSM 4150, ATCC 31549
22966	A. thermocellus AD2, DSM 25992
174402	A. thermocellus DSM 29190, BC 1

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18805	ACETIVIBRIO MEDIUM (DSMZ Medium 122)		Medium recipe at MediaDive	Name: ACETIVIBRIO MEDIUM (DSMZ Medium 122) Composition: Cellulose 10.0 g/l (optional) Na2-ß-glycerophosphate x 5 H2O 6.0 g/l K2HPO4 5.5 g/l Cellobiose 5.0 g/l Yeast extract 4.5 g/l MgCl2 x 6 H2O 2.6 g/l KH2PO4 1.43 g/l (NH4)2SO4 1.3 g/l L-Glutathione 0.25 g/l CaCl2 x 2 H2O 0.13 g/l FeSO4 x 7 H2O 0.0011 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
18805	positive	growth	60	thermophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
18805	anaerobe
125438	anaerobe	95.246
125439	anaerobe	98.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial	#Soil
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18805	hot spring soil sample	WY, Yellowstone National Park	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18805	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM25557v2 assembly for Acetivibrio thermocellus YS	contig	GCA_000255575	1094188.3	2534682104	1094188	58.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acetivibrio thermocellus YS
NCBI: GCA_000255575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.00	no
125439	motility	BacteriaNetⓘ	yes	84.00	no
125439	gram_stain	BacteriaNetⓘ	variable	84.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acetivibrio thermocellus YS YS
NCBI: GCA_000255575.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.41	no
125438	anaerobic	anaerobicⓘ	yes	95.25	yes
125438	aerobic	aerobicⓘ	no	97.94	yes
125438	spore-forming	spore-formingⓘ	yes	83.94	no
125438	thermophilic	thermophileⓘ	yes	68.06	yes
125438	flagellated	motile2+ⓘ	yes	77.71	no

Literature

References

#18805	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25991
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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