Acetobacter aceti (CIP 102998, IAM 1802, IFO 3281)

Name: Acetobacter aceti (CIP 102998, IAM 1802, IFO 3281)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135985

Type strain

Strain Designation 58, A-34

Culture col. no. CIP 102998 IAM 1802 IFO 3281 NBRC 3281 LMG 1512 3 more

NCBI tax ID(s) 435

Special Collections JCM CIP

History IAM 1802 <-- T. Asai A-34 <-- IFO 3281 <-- K. Kondo 58. CIP <- 1986, IAM <- T. Asai: strain A-34 <- K. Kondo, IFO: strain 58

Links

Acetobacter aceti 58 is a mesophilic prokaryote that was isolated from Rice vinegar.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 14539

LMG 1512,IAM 1802,IFO 3281,CIP 102998,NBRC 3281,BCRC 10382,CCRC 10382,JCM 20268

@ref 20215

Last LPSN update 2026-02-09 11:32:33

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Acetobacter

Species Acetobacter aceti

Full scientific name Acetobacter aceti (Pasteur 1864) Beijerinck 1898 (Approved Lists 1980)

Synonyms (1)

"Mycoderma aceti"

BacDive ID	Other strains from **Acetobacter aceti** (8)	Type strain
2	A. aceti L 40, DSM 3508, ATCC 15973, NCIB 8621, CCUG ... (type strain)
1	A. aceti B 4114, DSM 2002, NCIB 8554
100608	A. aceti STI07759(IMET), IMET 7759, VKM B-464
162842	A. aceti JCM 20276, IAM 1814, LMG 1372, LMG 1695
163091	A. aceti JCM 21164, ATCC 12878, IAM 14350, LMG 1520, ...
163298	A. aceti JCM 25003, LMG 1506, LMG 5
163299	A. aceti JCM 25004, LMG 1496
163300	A. aceti JCM 25005, LMG 1535

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.3
125438	negative	97.833

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
35278	MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii		Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
35278	CIP Medium 1			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
35278	positive	growth	30	mesophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99
125438		93.512

Observation

67770

Observationquinones: Q-9

Isolation, sampling and environmental information

Isolation

67770

Sample typeRice vinegar

Taxonmaps

69479

Global distribution of 16S sequence AB680045 (>99% sequence identity) for Acetobacter from Microbeatlas

Aquatic Samples	132
Soil Samples	133
Animal Samples	499
Plant Samples	124
Total Samples	888

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
35278	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
67770	ASM272389v1 assembly for Acetobacter aceti NBRC 3281	contig	GCA_002723895	435.8	435	37.43

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Acetobacter aceti gene for 16S rRNA, partial sequence, strain: NBRC 3281	AB680045	1413	435
124043	Acetobacter aceti 16S rRNA, partial sequence.	AB003968	155	435
124043	Acetobacter aceti genes for 16S rRNA, 16S-23S rRNA ITS, and 23S rRNA, partial and complete sequences.	AB161358	923	435
124043	Acetobacter aceti partial 16S rRNA gene, strain LMG 1512	AJ012545	694	435
124043	Acetobacter aceti strain LMG 1512 16S ribosomal RNA gene, partial sequence.	JF793951	1352	435

GC content

@ref	GC-content (mol%)	Method
67770	56.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acetobacter aceti NBRC 3281
NCBI: GCA_002723895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.00	no
125439	motility	BacteriaNetⓘ	yes	77.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	75.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acetobacter aceti strain NBRC 3281
PATRIC: 435.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.83	no
125438	anaerobic	anaerobicⓘ	no	93.73	no
125438	spore-forming	spore-formingⓘ	no	93.51	no
125438	thermophilic	thermophileⓘ	no	95.37	no
125438	aerobic	aerobicⓘ	yes	80.87	no
125438	flagellated	motile2+ⓘ	yes	70.15	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Production of D-lyxose from D-glucose by microbial and enzymatic reactions.	Ahmed Z, Sasahara H, Bhuiyan SH, Saiki T, Shimonishi T, Takada G, Izumori K	J Biosci Bioeng	10.1016/s1389-1723(00)87100-5	1999
	Biochemical preparation of L-ribose and L-arabinose from ribitol: a new approach.	Ahmed Z, Shimonishi T, Bhuiyan SH, Utamura M, Takada G, Izumori K	J Biosci Bioeng	10.1016/s1389-1723(99)80225-4	1999
Metabolism	Growth characteristics and oxidative capacity of Acetobacter aceti IFO 3281: implications for L-ribulose production.	Kylma AK, Granstrom T, Leisola M	Appl Microbiol Biotechnol	10.1007/s00253-003-1406-4	2003
Enzymology	Purification of restriction endonuclease from Acetobacter aceti IFO 3281 (AatII) and its properties.	Sato H, Suzuki T, Yamada Y	Agric Biol Chem		1990
Enzymology	New restriction endonucleases from Acetobacter aceti and Bacillus aneurinolyticus.	Sugisaki H, Maekawa Y, Kanazawa S, Takanami M	Nucleic Acids Res	10.1093/nar/10.19.5747	1982

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#35278	Collection of Institut Pasteur ; Curators of the CIP; CIP 102998
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Acetobacter aceti (CIP 102998, IAM 1802, IFO 3281)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002723895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media