Name: Acetobacter aceti 58
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 135985

Type strain:

Species: Acetobacter aceti

Strain Designation: 58, A-34

Culture col. no.: CIP 102998, IAM 1802, IFO 3281, JCM 20268, LMG 1512, NBRC 3281

Strain history: CIP <- 1986, IAM <- T. Asai: strain A-34 <- K. Kondo, IFO: strain 58

NCBI tax ID(s): 435 (species)

SI-ID 14539

LMG 1512, IAM 1802, IFO 3281, CIP 102998, NBRC 3281, BCRC 10382, CCRC 10382, JCM 20268

Special Collections

Other strains from Acetobacter aceti

Section

When using BacDive for research please cite our paper

Acetobacter aceti 58 is a mesophilic, Gram-negative bacterium that was isolated from Rice vinegar.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acetobacter*
	Species	**Acetobacter aceti**
	Full Scientific Name (LPSN)	Acetobacter aceti (Pasteur 1864) Beijerinck 1898 (Approved Lists 1980)

Synonym

"Mycoderma aceti"

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	negative Confidence in %98.3
[Ref.: #125438]	Gram stain	negative Confidence in %97.833

Information on culture and growth conditions Culture and growth conditions

[Ref.: #35278]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #35278]

Culture medium growth

[Ref.: #35278]

Culture medium composition

expand / minimize

[Ref.: #35278]

Culture medium

CIP Medium 1

[Ref.: #35278]

Culture medium growth

[Ref.: #35278]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #35278]			growth	30 °C
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]	Ability of spore formation	no Confidence in %99
[Ref.: #125438]	Ability of spore formation	no Confidence in %93.512

[Ref.: #67770]

Observation

quinones: Q-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rice vinegar
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB680045 (>99% sequence identity) for Acetobacter from Microbeatlas

Aquatic Samples	132
Soil Samples	133
Animal Samples	499
Plant Samples	124
Total Samples	888

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #35278]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acetobacter aceti gene for 16S rRNA, partial sequence, strain: NBRC 3281	AB680045	1413	GenBank ENA	435 tax ID
[Ref.: #124043]	Acetobacter aceti 16S rRNA, partial sequence.	AB003968	155	GenBank ENA	435 tax ID	*
[Ref.: #124043]	Acetobacter aceti partial 16S rRNA gene, strain LMG 1512	AJ012545	694	GenBank ENA	435 tax ID	*
[Ref.: #124043]	Acetobacter aceti genes for 16S rRNA, 16S-23S rRNA ITS, and 23S rRNA, partial and complete sequences.	AB161358	923	GenBank ENA	435 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acetobacter aceti NBRC 3281	GCA_002723895	contig	GenBank ENA	435 tax ID
[Ref.: #66792]	Acetobacter aceti strain NBRC 3281	435.8	wgs	PATRIC	435 tax ID	*

[Ref.: #67770]

GC-content

56.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acetobacter aceti strain NBRC 3281 PATRIC: 435.8
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.833	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	93.731	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	93.512	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.369	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	80.873	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	70.145	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acetobacter aceti NBRC 3281 NCBI: GCA_002723895
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	77.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.3
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	75.6

Availability in culture collections External links

[Ref.: #35278]

Culture collection no.

CIP 102998, IAM 1802, IFO 3281, JCM 20268, LMG 1512, NBRC 3281

[Ref.: #93241]

SI-ID 14539

Literature:

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Production of D-lyxose from D-glucose by microbial and enzymatic reactions.	Ahmed Z, Sasahara H, Bhuiyan SH, Saiki T, Shimonishi T, Takada G, Izumori K	J Biosci Bioeng	10.1016/s1389-1723(00)87100-5	1999	*
Metabolism	Growth characteristics and oxidative capacity of Acetobacter aceti IFO 3281: implications for L-ribulose production.	Kylma AK, Granstrom T, Leisola M	Appl Microbiol Biotechnol	10.1007/s00253-003-1406-4	2003	*
Enzymology	Purification of restriction endonuclease from Acetobacter aceti IFO 3281 (AatII) and its properties.	Sato H, Suzuki T, Yamada Y	Agric Biol Chem		1990	*
Enzymology	New restriction endonucleases from Acetobacter aceti and Bacillus aneurinolyticus.	Sugisaki H, Maekawa Y, Kanazawa S, Takanami M	Nucleic Acids Res	10.1093/nar/10.19.5747	1982	*
	Biochemical preparation of L-ribose and L-arabinose from ribitol: a new approach.	Ahmed Z, Shimonishi T, Bhuiyan SH, Utamura M, Takada G, Izumori K	J Biosci Bioeng	10.1016/s1389-1723(99)80225-4	1999	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#35278 Collection of Institut Pasteur ; Curators of the CIP; CIP 102998

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#93241

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14539.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Acetobacter aceti strain NBRC 3281

Acetobacter aceti NBRC 3281

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