Name: Acetobacter tropicalis DSM 15551
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17

Type strain:

Species: Acetobacter tropicalis

Culture col. no.: DSM 15551, IFO 16470, NBRC 16470, NRIC 0312, JCM 10947, BCRC 17166, LMG 19825

Strain history: NRIC 0312 <-- P. Lisdiyanti Ni-6b.

NCBI tax ID(s): 1307920 (strain), 104102 (species)

SI-ID 14620

LMG 19825, IFO 16470, JCM 10947, NBRC 16470, DSM 15551, BCRC 17166, CCRC 17166, VTT E-042464

Special Collections

DSMZ
JCM

Other strains from Acetobacter tropicalis

Section

Acetobacter tropicalis DSM 15551 is a mesophilic, Gram-negative bacterium that was isolated from coconut juice, Cioccos nucifera.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acetobacter*
	Species	**Acetobacter tropicalis**
	Full Scientific Name (LPSN)	Acetobacter tropicalis Lisdiyanti et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.333

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5997]

Culture medium

ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989)

[Ref.: #5997]

Culture medium growth

[Ref.: #5997]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5997]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5997]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.71

[Ref.: #67770]

Observation

quinones: Q-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5997]	Sample type/isolated from	coconut juice, Cioccos nucifera
[Ref.: #5997]	Host species	Cioccos nucifera
[Ref.: #5997]	Country	Indonesia
[Ref.: #5997]	Country ISO 3 Code	IDN
[Ref.: #5997]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Coconut juice
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yogyakarta
[Ref.: #67770]	Country	Indonesia
[Ref.: #67770]	Country ISO 3 Code	IDN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Plant	#Fruit (Seed)
#Host Body Product	#Plant	#Juice (natural)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB032355 (>99% sequence identity) for Acetobacter tropicalis from Microbeatlas

Aquatic Samples	25
Soil Samples	101
Animal Samples	218
Plant Samples	77
Total Samples	421

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5997]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5997]	Acetobacter tropicalis gene for 16S rRNA, partial sequence, strain: NRIC 0312, isolate: No.39	AB032355	1443	GenBank ENA	104102 tax ID
[Ref.: #20218]	Acetobacter tropicalis gene for 16S rRNA, partial sequence, strain: NBRC 16470	AB681066	1417	GenBank ENA	104102 tax ID	*
[Ref.: #20218]	Acetobacter tropicalis gene for 16S rRNA, partial sequence, strain: NRIC 0312, isolate: No.3	AB032354	1451	GenBank ENA	104102 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acetobacter tropicalis NBRC 16470	GCA_000787635	scaffold	GenBank ENA	104102 tax ID
[Ref.: #66792]	Acetobacter tropicalis LMG 19825	GCA_001580915	contig	GenBank ENA	104102 tax ID	*
[Ref.: #66792]	Acetobacter tropicalis strain LMG 19825	104102.11	wgs	PATRIC	104102 tax ID	*
[Ref.: #66792]	Acetobacter tropicalis strain NBRC 16470	104102.29	wgs	PATRIC	104102 tax ID	*
[Ref.: #66792]	Acetobacter tropicalis strain NBRC 16470	104102.10	wgs	PATRIC	104102 tax ID	*
[Ref.: #66792]	Acetobacter tropicalis NBRC 16470	2667527850	draft	JGI IMG/M	104102 tax ID	*

[Ref.: #67770]

GC-content

55.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acetobacter tropicalis strain LMG 19825 PATRIC: 104102.11
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.57	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.71	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.617	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.451	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	55.68	no

Availability in culture collections External links

[Ref.: #5997]

Culture collection no.

DSM 15551, IFO 16470, NBRC 16470, NRIC 0312, JCM 10947, BCRC 17166, LMG 19825

[Ref.: #69701]

SI-ID 14620

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acetobacter garciniae sp. nov., an acetic acid bacterium isolated from fermented mangosteen peel in Thailand.	Yukphan P, Charoenyingcharoen P, Kingcha Y, Likhitrattanapisal S, Muangham S, Tanasupawat S, Yamada Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005052	2021	*
Enzymology	Heterologous expression of membrane-bound alcohol dehydrogenase-encoding genes for glyceric acid production using Gluconobacter sp. CHM43 and its derivatives.	Habe H, Sato Y, Tani H, Matsutani M, Tanioka K, Theeragool G, Matsushita K, Yakushi T	Appl Microbiol Biotechnol	10.1007/s00253-021-11535-0	2021	*
Genetics	Draft Genome Sequence of Acetobacter tropicalis Type Strain NBRC16470, a Producer of Optically Pure d-Glyceric Acid.	Koike H, Sato S, Morita T, Fukuoka T, Habe H	Genome Announc	10.1128/genomeA.01329-14	2014	*
Enzymology	Membrane-bound alcohol dehydrogenase is essential for glyceric acid production in Acetobacter tropicalis.	Habe H, Sato S, Fukuoka T, Kitamoto D, Yakushi T, Matsushita K, Sakaki K	J Oleo Sci	10.5650/jos.60.489	2011	*
Metabolism	Microbial production of glyceric acid, an organic acid that can be mass produced from glycerol.	Habe H, Shimada Y, Yakushi T, Hattori H, Ano Y, Fukuoka T, Kitamoto D, Itagaki M, Watanabe K, Yanagishita H, Matsushita K, Sakaki K	Appl Environ Microbiol	10.1128/AEM.01535-09	2009	*
Metabolism	Biotransformation of glycerol to D-glyceric acid by Acetobacter tropicalis.	Habe H, Fukuoka T, Kitamoto D, Sakaki K	Appl Microbiol Biotechnol	10.1007/s00253-008-1737-2	2008	*

References

#5997

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15551

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69701

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14620.1 )

* These data were automatically processed and therefore are not curated

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Acetobacter tropicalis strain LMG 19825

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