Strain identifier

BacDive ID: 17

Type strain: Yes

Species: Acetobacter tropicalis

Strain history: NRIC 0312 <-- P. Lisdiyanti Ni-6b.

NCBI tax ID(s): 1307920 (strain), 104102 (species)

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General

@ref: 5997

BacDive-ID: 17

DSM-Number: 15551

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Acetobacter tropicalis DSM 15551 is a mesophilic bacterium that was isolated from coconut juice, Cioccos nucifera.

NCBI tax id

NCBI tax idMatching level
104102species
1307920strain

strain history

@refhistory
5997<- IFO
67770NRIC 0312 <-- P. Lisdiyanti Ni-6b.

doi: 10.13145/bacdive17.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter tropicalis
  • full scientific name: Acetobacter tropicalis Lisdiyanti et al. 2001

@ref: 5997

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter tropicalis

full scientific name: Acetobacter tropicalis Lisdiyanti et al. 2001

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 5997
  • name: ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/989
  • composition: Name: ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989) Composition: Agar 15.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Bacto peptone 5.0 g/l MgSO4 x 7 H2O 1.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
5997positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentgeographic location
5997coconut juice, Cioccos nuciferaCioccos nuciferaIndonesiaIDNAsia
67770Coconut juiceIndonesiaIDNAsiaYogyakarta

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Plant#Fruit (Seed)
#Host Body Product#Plant#Juice (natural)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3086.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_961;99_3086&stattab=map
  • Last taxonomy: Acetobacter tropicalis
  • 16S sequence: AB032355
  • Sequence Identity:
  • Total samples: 421
  • soil counts: 101
  • aquatic counts: 25
  • animal counts: 218
  • plant counts: 77

Safety information

risk assessment

  • @ref: 5997
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacter tropicalis gene for 16S rRNA, partial sequence, strain: NBRC 16470AB6810661417ena104102
20218Acetobacter tropicalis gene for 16S rRNA, partial sequence, strain: NRIC 0312, isolate: No.3AB0323541451ena104102
5997Acetobacter tropicalis gene for 16S rRNA, partial sequence, strain: NRIC 0312, isolate: No.39AB0323551443ena104102

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter tropicalis NBRC 16470GCA_007989245contigncbi104102
66792Acetobacter tropicalis LMG 19825GCA_001580915contigncbi104102
66792Acetobacter tropicalis strain LMG 19825104102.11wgspatric104102
66792Acetobacter tropicalis strain NBRC 16470104102.29wgspatric104102
66792Acetobacter tropicalis strain NBRC 16470104102.10wgspatric104102
66792Acetobacter tropicalis NBRC 164702667527850draftimg104102
66792Acetobacter tropicalis LMG 198252724679595draftimg104102
67770Acetobacter tropicalis NBRC 16470GCA_000787635scaffoldncbi104102

GC content

  • @ref: 67770
  • GC-content: 55.9
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno74.177no
flagellatedno96.483no
gram-positiveno96.037no
anaerobicno99.143no
aerobicyes93.89no
halophileno92.585no
spore-formingno93.855no
thermophileno97.989yes
glucose-utilyes81.424no
glucose-fermentno91.57no

External links

@ref: 5997

culture collection no.: DSM 15551, IFO 16470, NBRC 16470, NRIC 0312, JCM 10947, BCRC 17166, LMG 19825

straininfo link

  • @ref: 69701
  • straininfo: 14620

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism18853153Biotransformation of glycerol to D-glyceric acid by Acetobacter tropicalis.Habe H, Fukuoka T, Kitamoto D, Sakaki KAppl Microbiol Biotechnol10.1007/s00253-008-1737-22008Acetobacter/*metabolism, Biotransformation, Chromatography, High Pressure Liquid, Culture Media/chemistry, Gluconacetobacter/metabolism, Glyceric Acids/*metabolism, Glycerol/*metabolism, Stereoisomerism, Time FactorsCultivation
Metabolism19837846Microbial production of glyceric acid, an organic acid that can be mass produced from glycerol.Habe H, Shimada Y, Yakushi T, Hattori H, Ano Y, Fukuoka T, Kitamoto D, Itagaki M, Watanabe K, Yanagishita H, Matsushita K, Sakaki KAppl Environ Microbiol10.1128/AEM.01535-092009Acetobacter/genetics/metabolism, Alcohol Dehydrogenase/genetics/metabolism, Dihydroxyacetone/metabolism, Gluconacetobacter/genetics/metabolism, Gluconobacter/enzymology/genetics/*metabolism, Glyceric Acids/chemistry/*metabolism, Glycerol/*metabolism, Industrial Microbiology/*methodsBiotechnology
Enzymology21852749Membrane-bound alcohol dehydrogenase is essential for glyceric acid production in Acetobacter tropicalis.Habe H, Sato S, Fukuoka T, Kitamoto D, Yakushi T, Matsushita K, Sakaki KJ Oleo Sci10.5650/jos.60.4892011Acetobacter/*enzymology/metabolism, Alcohol Dehydrogenase/genetics/isolation & purification/*metabolism, Amino Acid Sequence, Cell Membrane/*enzymology/metabolism, DNA, Bacterial/genetics/metabolism, Gene Expression Profiling, Glyceric Acids/*metabolism, Molecular Sequence Data, Polymerase Chain Reaction, Sequence Homology, Amino AcidMetabolism
Genetics25523780Draft Genome Sequence of Acetobacter tropicalis Type Strain NBRC16470, a Producer of Optically Pure d-Glyceric Acid.Koike H, Sato S, Morita T, Fukuoka T, Habe HGenome Announc10.1128/genomeA.01329-142014
Enzymology34453563Heterologous expression of membrane-bound alcohol dehydrogenase-encoding genes for glyceric acid production using Gluconobacter sp. CHM43 and its derivatives.Habe H, Sato Y, Tani H, Matsutani M, Tanioka K, Theeragool G, Matsushita K, Yakushi TAppl Microbiol Biotechnol10.1007/s00253-021-11535-02021Acetobacter, Alcohol Dehydrogenase, *Gluconobacter/genetics, Glyceric AcidsBiotechnology
Phylogeny34662265Acetobacter garciniae sp. nov., an acetic acid bacterium isolated from fermented mangosteen peel in Thailand.Yukphan P, Charoenyingcharoen P, Kingcha Y, Likhitrattanapisal S, Muangham S, Tanasupawat S, Yamada YInt J Syst Evol Microbiol10.1099/ijsem.0.0050522021Acetic Acid, *Acetobacter/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermented Foods/*microbiology, Fruit/microbiology, *Garcinia mangostana/microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, ThailandTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5997Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15551)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15551
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69701Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14620.1StrainInfo: A central database for resolving microbial strain identifiers