Mouse-Microbiome Dashboard
The Mouse-Microbiome project or miBC (mouse intestinal Bacterial Collection) includes bacterial strains isolated from the intestine of mice. This well-curated resource was built to increase our knowledge of cultured diversity within the mouse gut microbiota and to support scientists with their own research by providing multiple strains representing a broad phylogenetic diversity to be used for functional experiments. miBC is a joint initiative of the RTWH Aachen (Prof. Thomas Clavel) and the Leibniz Institute DSMZ.
Total strains
112
112
Total species
86
86
Mean cell length / width
2.07 / 0.53 µm
2.07 / 0.53 µm
Mean temperature optimum
34.25 C°
34.25 C°
Mean pH optimum
7.4
7.4
Mean incubation time
2.19 days
2.19 days
Mean salt optimum
1 %
1 %
16S sequence accessions
107
107
| BacDive ID | Type strain | Species | Culture col. no. | NCBI tax ID(s) |
|---|---|---|---|---|
| 18089 |  |
Acetatifactor muris | DSM 23669, ATCC BAA-2170 | 879566 (species) |
| 131091 |  |
Actinomyces bowdenii | DSM 28589 | 131109 (species) |
| 131515 | |
Acutalibacter muris | DSM 26090, KCTC 15540 | 1796620 (species) |
| 22982 | |
Adlercreutzia caecicola | DSM 22242, CCUG 57646, KCTC 15365 | 747645 (species) |
| 3077 | |
Adlercreutzia caecimuris | DSM 21839, CCUG 56815 | 671266 (species) |
| 3076 | |
Adlercreutzia mucosicola | DSM 19490, CCUG 54980 | 1121866 (strain), 580026 (species) |
| 131531 | |
Adlercreutzia muris | DSM 29508, KCTC 15543 | 1796610 (species) |
| 131145 | |
Akkermansia muciniphila | DSM 26127 | 239935 (species) |
| 131513 | |
Alistipes timonensis | DSM 27924 | 1465754 (species) |
| 131107 | |
Anaerofustis stercorihominis | DSM 28733 | 214853 (species) |
| 131344 | |
Anaerosalibacter massiliensis | DSM 29482 | 1347392 (species) |
| 131106 | |
Anaerotruncus colihominis | DSM 28734 | 169435 (species) |
| 130867 | |
Bacillus cereus | DSM 28590 | 1396 (species) |
| 130858 | |
Bacillus licheniformis | DSM 28591 | 1402 (species) |
| 130876 | |
Bacillus subtilis | DSM 28592 | 1423 (species) |
| 131081 | |
Bacillus thermoamylovorans | DSM 28625 | 35841 (species) |
| 1606 | |
Bacteroides acidifaciens | DSM 15896, JCM 10556, CCUG 51929, BCRC 81230 | 1235814 (strain), 85831 (species) |
| 131098 | |
Bacteroides acidifaciens | DSM 100502 | 85831 (species) |
| 131518 | |
Bacteroides caecimuris | DSM 26085, KCTC 15547 | 1796613 (species) |
| 131167 | |
Bacteroides xylanisolvens | DSM 100015 | 371601 (species) |
| 131034 | |
Bifidobacterium animalis | DSM 28736 | 28025 (species) |
| 131035 | |
Bifidobacterium animalis | DSM 26074 | 28025 (species) |
| 131530 | |
Blautia caecimuris | DSM 29492, KCTC 15541, JCM 34498 | 1796615 (species) |
| 130918 | |
Blautia coccoides | DSM 29138 | 1532 (species) |
| 130917 | |
Blautia pseudococcoides | DSM 28737 | 1796616 (species) |
| 130919 | |
Blautia pseudococcoides | DSM 26115 | 1796616 (species) |
| 130906 | |
Cellulosimicrobium cellulans | DSM 29131 | 1710 (species) |
| 130923 | |
Clostridioides mangenotii | DSM 29133 | 1540 (species) |
| 130920 | |
Clostridium cochlearium | DSM 29358 | 1494 (species) |
| 130921 | |
Clostridium innocuum | DSM 29132 | 1522 (species) |
| 130922 | |
Clostridium innocuum | DSM 26113 | 1522 (species) |
| 130930 | |
Clostridium mucosae | DSM 100503 | 1796627 (species) |
| 130924 | |
Clostridium perfringens | DSM 29991 | 1502 (species) |
| 130932 | |
Clostridium sporogenes | DSM 29422 | 1509 (species) |
| 130933 | |
Clostridium symbiosum | DSM 29356 | 1512 (species) |
| 130931 | |
Clostridium tepidum | DSM 29420 | 1962263 (species) |
| 131527 | |
Cuneatibacter caecimuris | DSM 29486, KCTC 15539 | 1796618 (species) |
| 158516 | |
Duncaniella muris | DSM 103720, JCM 33116 | 2094150 (species) |
| 131093 | |
Enterocloster bolteae | DSM 29485 | 208479 (species) |
| 130916 | |
Enterocloster clostridioformis | DSM 26114 | 1531 (species) |
| 130942 | |
Enterococcus faecalis | DSM 29488 | 1351 (species) |
| 130943 | |
Enterococcus faecalis | DSM 32036 | 1351 (species) |
| 130944 | |
Enterococcus gallinarum | DSM 28564 | 1353 (species) |
| 130945 | |
Enterococcus gallinarum | DSM 28565 | 1353 (species) |
| 130946 | |
Enterococcus gallinarum | DSM 100110 | 1353 (species) |
| 130947 | |
Enterococcus hirae | DSM 28619 | 1354 (species) |
| 130954 | |
Escherichia coli | DSM 28618 | 562 (species) |
| 131520 | |
Extibacter muris | DSM 28560, KCTC 15546 | 1796622 (species) |
| 131521 | |
Extibacter muris | DSM 28561 | 1796622 (species) |
| 130909 | |
Flavonifractor plautii | DSM 29136 | 292800 (species) |
| 130910 | |
Flavonifractor plautii | DSM 29137 | 292800 (species) |
| 130911 | |
Flavonifractor plautii | DSM 26117 | 292800 (species) |
| 131517 | |
Flintibacter butyricus | DSM 27579, KCTC 15544 | 1417852 (species) |
| 131519 | |
Frisingicoccus caecimuris | DSM 28559, KCTC 15538 | 1796636 (species) |
| 24772 | |
Intestinimonas butyriciproducens | DSM 26588, CCUG 63529, KCTC 15744, JCM 32124 | 1297617 (species) |
| 131522 | |
Irregularibacter muris | DSM 28593, KCTC 28593 | 1796619 (species) |
| 131132 | |
Lacticaseibacillus paracasei | DSM 28675 | 1597 (species) |
| 131033 | |
Lactobacillus johnsonii | DSM 100219 | 33959 (species) |
| 24141 | |
Lactobacillus rodentium | DSM 24759, CCM 7945, KCTC 21049 | 947835 (species) |
| 131173 | |
Lactobacillus taiwanensis | DSM 28674 | 508451 (species) |
| 131174 | |
Lactobacillus taiwanensis | DSM 100220 | 508451 (species) |
| 6645 | |
Ligilactobacillus apodemi | DSM 16748 | 307126 (species) |
| 130960 | |
Ligilactobacillus murinus | DSM 28690 | 1622 (species) |
| 130961 | |
Ligilactobacillus murinus | DSM 28683 | 1622 (species) |
| 130962 | |
Ligilactobacillus murinus | DSM 100193 | 1622 (species) |
| 130963 | |
Ligilactobacillus murinus | DSM 100194 | 1622 (species) |
| 130965 | |
Limosilactobacillus reuteri | DSM 28673 | 1598 (species) |
| 130966 | |
Limosilactobacillus reuteri | DSM 100191 | 1598 (species) |
| 130967 | |
Limosilactobacillus reuteri | DSM 100192 | 1598 (species) |
| 130968 | |
Limosilactobacillus reuteri | DSM 32035 | 1598 (species) |
| 131528 | |
Longibaculum muris | DSM 29487, KCTC 15536 | 1796628 (species) |
| 131525 | |
Longicatena caecimuris | DSM 29481, KCTC 15535, JCM 32781 | 1796635 (species) |
| 131526 | |
Longicatena caecimuris | DSM 29490 | 1796635 (species) |
| 131016 | |
Mammaliicoccus lentus | DSM 100111 | 42858 (species) |
| 169567 | |
Mucispirillum schaedleri | DSM 104751 | 248039 (species) |
| 131536 | |
Muribaculum intestinale | DSM 28989, KCTC 15537 | 1796646 (species) |
| 158192 | |
Muribaculum intestinale | DSM 100739, JCM 33112 | 1796646 (species) |
| 158193 | |
Muribaculum intestinale | DSM 100746, JCM 33113 | 1796646 (species) |
| 131529 | |
Muricomes intestini | DSM 29489, KCTC 15545 | 1796634 (species) |
| 130360 | |
Murimonas intestini | DSM 26524, CCUG 63391, SRB 530 | 1337051 (species) |
| 130361 | |
Murimonas intestini | DSM 27577, CCUG 64595 | 1337051 (species) |
| 130362 | |
Murimonas intestini | DSM 27578, CCUG 64594 | 1337051 (species) |
| 131168 | |
Oceanobacillus caeni | DSM 28620 | 405946 (species) |
| 131094 | |
Paenibacillus lactis | DSM 28626 | 228574 (species) |
| 130928 | |
Paeniclostridium sordellii | DSM 29974 | 1505 (species) |
| 160556 | |
Palleniella intestinalis | DSM 103738 | 2736291 (species) |
| 130882 | |
Parabacteroides distasonis | DSM 29491 | 823 (species) |
| 131147 | |
Parabacteroides goldsteinii | DSM 29187 | 328812 (species) |
| 130915 | |
Paraclostridium bifermentans | DSM 29423 | 1490 (species) |
| 158517 | |
Paramuribaculum intestinale | DSM 100749, JCM 33114 | 2094151 (species) |
| 158518 | |
Paramuribaculum intestinale | DSM 100764, JCM 33115 | 2094151 (species) |
| 131523 | |
Pasteurella caecimuris | DSM 28627, KCTC 52216 | 1796644 (species) |
| 131524 | |
Pasteurella caecimuris | DSM 100775 | 1796644 (species) |
| 130992 | |
Pediococcus pentosaceus | DSM 28628 | 1255 (species) |
| 1627 | |
Phocaeicola sartorii | DSM 21941, CCUG 57211, JCM 17136 | 671267 (species) |
| 130883 | |
Phocaeicola vulgatus | DSM 28735 | 821 (species) |
| 130994 | |
Proteus mirabilis | DSM 28629 | 584 (species) |
| 131006 | |
Pseudomonas oleovorans | DSM 28630 | 301 (species) |
| 131020 | |
Staphylococcus warneri | DSM 28567 | 1292 (species) |
| 131024 | |
Staphylococcus xylosus | DSM 28566 | 1288 (species) |
Taxonomy
Morphology
Cultivation
Metabolism
Isolation sources
Molecular biology & pathogenicity
Tests & profiles
Special Collections
- DZIF
- Mouse-Microbiome
- Pig-Microbiome
- Chicken-Microbiome
- Arabidopsis-Microbiome
- ESA
- Reichenbach collection of Myxobacteria
- Wink compendium of Actinobacteria
- Culture Collection University Of Gothenburg
- Collection de l’Institut Pasteur
- Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen
- Japan Collection of Microorganisms
- Korean Collection for Type Cultures
- University of Coimbra Bacteria Culture Collection
- Strains from literature