Acetobacter papayae (NRIC 0655, NBRC 111466, LMG 26456)

Name: Acetobacter papayae (NRIC 0655, NBRC 111466, LMG 26456)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163331

Type strain

Culture col. no. NRIC 0655 NBRC 111466 LMG 26456 KACC 19722 JCM 25143

NCBI tax ID(s) 1234671 1076592

Special Collections JCM

History NRIC 0655 <-- P. Lisdiyanti 1-25.

Links

Acetobacter papayae JCM 25143 is a mesophilic prokaryote that was isolated from Papaya in Okinawa,.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 377516

LMG 26456,JCM 25143

@ref 20215

Last LPSN update 2025-12-16 10:09:11

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Acetobacter

Species Acetobacter papayae

Full scientific name Acetobacter papayae Iino et al. 2013

BacDive ID	Other strains from **Acetobacter papayae** (1)	Type strain
163332	A. papayae JCM 25144, NRIC 0656

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.833
125439		93.6
125439	negative	99.7

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		93.361
125439		99.2

Observation

67770

Observationquinones: Q-9

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent
67770	Papaya (fruit) (Carica papaya) in Okinawa,(2004)	Carica papaya	2004	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB665066 (>99% sequence identity) for Acetobacter from Microbeatlas

Aquatic Samples	569
Soil Samples	222
Animal Samples	1231
Plant Samples	263
Total Samples	2285

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Acetobacter papayae JCM 25143	contig		1234671.3		1234671	21.4
67770	ASM61328v1 assembly for Acetobacter papayae JCM 25143	contig	GCA_000613285	1234671.5	2582581005	1234671	18.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Acetobacter papayae gene for 16S rRNA, partial sequence	AB665066	1406		1234671
124043	Acetobacter papayae DNA, 16S-23S ribosomal RNA intergenic spacer, partial sequence, strain: JCM 25143.	AB936620	635		1234671

GC content

@ref	GC-content (mol%)	Method
67770	60.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acetobacter papayae JCM 25143
NCBI: GCA_000613285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	89.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	motility	BacteriaNetⓘ	yes	93.60	no
125439	spore_formation	BacteriaNetⓘ	no	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acetobacter papayae JCM 25143
PATRIC: 1234671.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.83	no
125438	anaerobic	anaerobicⓘ	no	86.93	no
125438	spore-forming	spore-formingⓘ	no	93.36	no
125438	aerobic	aerobicⓘ	yes	71.46	no
125438	thermophilic	thermophileⓘ	no	96.80	no
125438	flagellated	motile2+ⓘ	yes	66.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Evaluation of microbiota-induced changes in biochemical, sensory properties and volatile profile of kombucha produced by reformed microbial community.	Kilmanoglu H, Yigit Cinar A, Durak MZ.	Food Chem X	10.1016/j.fochx.2024.101469	2024
	Enrichment of Aquatic Xylan-Degrading Microbial Communities.	Gaenssle ALO, Bertran-Llorens S, Deuss PJ, Jurak E.	Microorganisms	10.3390/microorganisms12081715	2024
	A Review on the Interaction of Acetic Acid Bacteria and Microbes in Food Fermentation: A Microbial Ecology Perspective.	Han D, Yang Y, Guo Z, Dai S, Jiang M, Zhu Y, Wang Y, Yu Z, Wang K, Rong C, Yu Y.	Foods	10.3390/foods13162534	2024
	Microbial Dynamics between Yeasts and Acetic Acid Bacteria in Kombucha: Impacts on the Chemical Composition of the Beverage.	Tran T, Grandvalet C, Verdier F, Martin A, Alexandre H, Tourdot-Marechal R.	Foods	10.3390/foods9070963	2020
	Shedding Light on the Formation and Structure of Kombucha Biofilm Using Two-Photon Fluorescence Microscopy.	Tran T, Grandvalet C, Winckler P, Verdier F, Martin A, Alexandre H, Tourdot-Marechal R.	Front Microbiol	10.3389/fmicb.2021.725379	2021
	Microbial Interactions in Kombucha through the Lens of Metabolomics.	Tran T, Roullier-Gall C, Verdier F, Martin A, Schmitt-Kopplin P, Alexandre H, Grandvalet C, Tourdot-Marechal R.	Metabolites	10.3390/metabo12030235	2022
	Comprehensive deciphering prophages in genus Acetobacter on the ecology, genomic features, toxin-antitoxin system, and linkage with CRISPR-Cas system.	Qian C, Ma J, Liang J, Zhang L, Liang X.	Front Microbiol	10.3389/fmicb.2022.951030	2022
	Reconstruction of Simplified Microbial Consortia to Modulate Sensory Quality of Kombucha Tea.	Ferremi Leali N, Binati RL, Martelli F, Gatto V, Luzzini G, Salini A, Slaghenaufi D, Fusco S, Ugliano M, Torriani S, Salvetti E.	Foods	10.3390/foods11193045	2022
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020
	Acetobacter suratthanensis sp. nov., an acetic acid bacterium isolated in Thailand	Pitiwittayakul N, Theeragool G, Yukphan P, Chaipitakchonlatarn W, Malimas T, Muramatsu Y, Tanasupawat S, Nakagawa Y, Yamada Y.	Ann Microbiol		2016
Phylogeny	Acetobacter okinawensis sp. nov., Acetobacter papayae sp. nov., and Acetobacter persicus sp. nov.; novel acetic acid bacteria isolated from stems of sugarcane, fruits, and a flower in Japan.	Iino T, Suzuki R, Kosako Y, Ohkuma M, Komagata K, Uchimura T.	J Gen Appl Microbiol	10.2323/jgam.58.235	2012
Phylogeny	Acetobacter garciniae sp. nov., an acetic acid bacterium isolated from fermented mangosteen peel in Thailand.	Yukphan P, Charoenyingcharoen P, Kingcha Y, Likhitrattanapisal S, Muangham S, Tanasupawat S, Yamada Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005052	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acetobacter papayae (NRIC 0655, NBRC 111466, LMG 26456)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000613285

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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