Name: Acetobacter papayae JCM 25143
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163331

Type strain:

Species: Acetobacter papayae

Culture col. no.: JCM 25143, KACC 19722, LMG 26456, NBRC 111466, NRIC 0655

Strain history: NRIC 0655 <-- P. Lisdiyanti 1-25.

NCBI tax ID(s): 1234671 (strain), 1076592 (species)

SI-ID 377516

LMG 26456, JCM 25143

Special Collections

Other strains from Acetobacter papayae

Section

Acetobacter papayae JCM 25143 is a Gram-negative bacterium that was isolated from Papaya in Okinawa,.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acetobacter*
	Species	**Acetobacter papayae**
	Full Scientific Name (LPSN)	Acetobacter papayae Iino et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.833

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %93.361
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Papaya (fruit) (Carica papaya) in Okinawa,(2004)
[Ref.: #67770]	Host species	Carica papaya
[Ref.: #67770]	Sampling date	2004
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB665066 (>99% sequence identity) for Acetobacter from Microbeatlas

Aquatic Samples	569
Soil Samples	222
Animal Samples	1231
Plant Samples	263
Total Samples	2285

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acetobacter papayae gene for 16S rRNA, partial sequence	AB665066	1406	GenBank ENA	1234671 tax ID
[Ref.: #124043]	Acetobacter papayae DNA, 16S-23S ribosomal RNA intergenic spacer, partial sequence, strain: JCM 25143.	AB936620	635	GenBank ENA	1234671 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acetobacter papayae JCM 25143	GCA_000613285	contig	GenBank ENA	1234671 tax ID
[Ref.: #66792]	Acetobacter papayae JCM 25143	1234671.3	wgs	PATRIC	1234671 tax ID	*
[Ref.: #66792]	Acetobacter papayae JCM 25143	2582581005	draft	JGI IMG/M	1234671 tax ID	*

[Ref.: #67770]

GC-content

60.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acetobacter papayae JCM 25143 PATRIC: 1234671.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acetobacter papayae JCM 25143 PATRIC: 1234671.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.833	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	86.928	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.361	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	71.458	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.799	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	66.747	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 25143, KACC 19722, LMG 26456, NBRC 111466, NRIC 0655

[Ref.: #114029]

SI-ID 377516

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acetobacter garciniae sp. nov., an acetic acid bacterium isolated from fermented mangosteen peel in Thailand.	Yukphan P, Charoenyingcharoen P, Kingcha Y, Likhitrattanapisal S, Muangham S, Tanasupawat S, Yamada Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005052	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114029

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377516.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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