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Strain identifier

BacDive ID: 163331

Type strain: Yes

Species: Acetobacter papayae

Strain history: NRIC 0655 <-- P. Lisdiyanti 1-25.

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 7.1 (current version)

General

@ref: 67770

BacDive-ID: 163331

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Acetobacter papayae JCM 25143 is a mesophilic bacterium that was isolated from Papaya in Okinawa,.

NCBI tax id

NCBI tax idMatching level
1076592species
1234671strain

strain history: NRIC 0655 <-- P. Lisdiyanti 1-25.

doi: 10.13145/bacdive163331.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter papayae
  • full scientific name: Acetobacter papayae Iino et al. 2013

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter papayae

full scientific name: Acetobacter papayae Iino et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.711

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.082

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.801

observation

  • @ref: 67770
  • observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Papaya (fruit) (Carica papaya) in Okinawa,(2004)
  • host species: Carica papaya
  • sampling date: 2004
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_5459.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_3243;98_4077;99_5459&stattab=map
  • Last taxonomy: Acetobacter
  • 16S sequence: AB665066
  • Sequence Identity:
  • Total samples: 2285
  • soil counts: 222
  • aquatic counts: 569
  • animal counts: 1231
  • plant counts: 263

Sequence information

16S sequences

  • @ref: 67770
  • description: Acetobacter papayae gene for 16S rRNA, partial sequence
  • accession: AB665066
  • length: 1406
  • database: ena
  • NCBI tax ID: 1234671

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter papayae JCM 251431234671.3wgspatric1234671
66792Acetobacter papayae JCM 251432582581005draftimg1234671
67770Acetobacter papayae JCM 25143 JCM 25143GCA_000613285contigncbi1234671

GC content

  • @ref: 67770
  • GC-content: 60.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 25143, KACC 19722, LMG 26456, NBRC 111466, NRIC 0655

literature

  • topic: Phylogeny
  • Pubmed-ID: 34662265
  • title: Acetobacter garciniae sp. nov., an acetic acid bacterium isolated from fermented mangosteen peel in Thailand.
  • authors: Yukphan P, Charoenyingcharoen P, Kingcha Y, Likhitrattanapisal S, Muangham S, Tanasupawat S, Yamada Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.005052
  • year: 2021
  • mesh: Acetic Acid, *Acetobacter/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermented Foods/*microbiology, Fruit/microbiology, *Garcinia mangostana/microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand
  • topic2: Transcriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes