Achromobacter denitrificans (CIP 60.83, CCUG 61949, LMG 1860)

Name: Achromobacter denitrificans (CIP 60.83, CCUG 61949, LMG 1860)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136807

Type strain

Strain Designation Aulb.court

Culture col. no. CIP 60.83 CCUG 61949 LMG 1860 IAM 12595 JCM 20672 1 more

NCBI tax ID(s) 32002

Special Collections CCUG JCM CIP

Links

Achromobacter denitrificans Aulb.court is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from Human,urine.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 13568

LMG 1860,IAM 12595,CIP 60.83,JCM 20672,CCUG 61949

@ref 20215

Last LPSN update 2025-12-16 10:02:39

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter denitrificans

Full scientific name Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003

Synonyms (3)

Achromobacter xylosoxidans subsp. denitrificans
Alcaligenes denitrificans
Alcaligenes xylosoxidans subsp. denitrificans

BacDive ID	Other strains from **Achromobacter denitrificans** (33)	Type strain
318	A. denitrificans 12, 55B, DSM 30026, ATCC 15173, NCTC 8582, ... (type strain)
316	A. denitrificans DSM 4612, NCIB 11961
317	A. denitrificans CMA1, DSM 11850
135302	A. denitrificans CIP 100014
135363	A. denitrificans CIP 100017
136801	A. denitrificans 81-75, CIP 100013
136804	A. denitrificans 111-75, CIP 100018
136819	A. denitrificans 75-75, CIP 100011
136820	A. denitrificans 76-75, CIP 100012
136821	A. denitrificans 101-75, CIP 100015
136826	A. denitrificans 73-75, CIP 100010
136830	A. denitrificans 103-75, CIP 100016
137270	A. denitrificans 204-83, CIP 100140
137333	A. denitrificans 196-83, CIP 100142
137336	A. denitrificans 278.82, CIP 105844
137545	A. denitrificans 318-75, A3b, CIP 100020
138418	A. denitrificans CIP 102277
141232	A. denitrificans CCUG 307
141241	A. denitrificans CCUG 366, LMG 3459, LMG 3342
141246	A. denitrificans CCUG 379 A
141415	A. denitrificans CCUG 1608 A
141496	A. denitrificans CCUG 2368
141589	A. denitrificans CCUG 3353, IAM 12556, JCM 20635, LMG 3412, ...
143451	A. denitrificans CCUG 19225
145806	A. denitrificans CCUG 29644
147886	A. denitrificans CCUG 34433
152884	A. denitrificans CCUG 47876
154536	A. denitrificans CCUG 54280
156250	A. denitrificans CCUG 60861
156464	A. denitrificans CCUG 61950, LMG 26680
162416	A. denitrificans JCM 19165
162975	A. denitrificans JCM 20641, IAM 12563, NCIMB 10771
162976	A. denitrificans JCM 20642, IAM 12564, NCIMB 9550

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		94.3
125438	negative		96.682
36459	negative	rod-shaped

Colony morphology

@ref	Incubation period
62744	1 day
36459

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
36459	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
36459	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
36459	positive	growth	30	mesophilic
36459	positive	growth	15-37
36459	negative	growth	5
36459	negative	growth	41
36459	negative	growth	45
62744	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
62744	aerobe
36459	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
36459	NaCl	positive	growth	0-6 %
36459	NaCl		growth	8 %
36459	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
36459	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
36459	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
36459	606565 ChEBI	hippurate	+	hydrolysis
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
36459	15792 ChEBI	malonate	+	assimilation
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
36459	17632 ChEBI	nitrate	+	builds gas from
36459	17632 ChEBI	nitrate	+	reduction
36459	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
36459	16301 ChEBI	nitrite	+	builds gas from
36459	16301 ChEBI	nitrite	+	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
36459	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
36459	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
36459	15688 ChEBI	acetoin		-
36459	17234 ChEBI	glucose			-
68369	35581 ChEBI	indole	-			from API 20NE

Enzymes

@ref	Value	Activity	Ec
36459	alcohol dehydrogenase	-	1.1.1.1
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
36459	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
36459	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
36459	caseinase	-	3.4.21.50
36459	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
36459	DNase	-
68382	esterase lipase (C 8)	-		from API zym
36459	gamma-glutamyltransferase	-	2.3.2.2
36459	gelatinase	-
68369	gelatinase	-		from API 20NE
36459	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
36459	lipase	-
68382	lipase (C 14)	-		from API zym
36459	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
36459	ornithine decarboxylase	-	4.1.1.17
36459	oxidase	+
36459	phenylalanine ammonia-lyase	-	4.3.1.24
36459	protease	-
68382	trypsin	-	3.4.21.4	from API zym
36459	tryptophan deaminase	-
36459	tween esterase	-
36459	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
62744	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
36459	-	+	+	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
62744	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
36459	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	-	+	-	-	+	-	-	-	+	+	+	-	-	-	-	-	+	-	+	-	-	+	+	+	+	+	-	-	+	-	+	+	+	+	+	+	+	+	-	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Urine
#Host	#Human	-

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
62744	Human,urine	1966	France	FRA	Europe
67770	Urine
36459	Human, Urine

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
36459	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
67770	LMG 1860 assembly for Achromobacter denitrificans LMG 1860	contig	GCA_902859985	32002.37	32002	57.23

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter denitrificans LMG 1860
NCBI: GCA_902859985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.70	no
125439	motility	BacteriaNetⓘ	yes	82.50	no
125439	gram_stain	BacteriaNetⓘ	negative	94.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter denitrificans strain LMG 1860
PATRIC: 32002.37

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.68	no
125438	anaerobic	anaerobicⓘ	no	95.81	yes
125438	spore-forming	spore-formingⓘ	no	86.39	no
125438	aerobic	aerobicⓘ	yes	84.82	no
125438	thermophilic	thermophileⓘ	no	98.48	yes
125438	flagellated	motile2+ⓘ	yes	83.96	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36459	Collection of Institut Pasteur ; Curators of the CIP; CIP 60.83
#62744	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61949
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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