Achromobacter denitrificans (DSM 11850, CMA1)

Name: Achromobacter denitrificans (DSM 11850, CMA1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 317

Type strain

Strain Designation CMA1

Culture col. no. DSM 11850 CMA1

NCBI tax ID(s) 32002

Special Collections DSMZ

History <- F. Streichsbier (Pseudomonas cepacia, CMA1)

Links

Achromobacter denitrificans CMA1 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 49189

DSM 11850

@ref 20215

Last LPSN update 2025-12-16 09:46:50

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter denitrificans

Full scientific name Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003

Synonyms (3)

Achromobacter xylosoxidans subsp. denitrificans
Alcaligenes denitrificans
Alcaligenes xylosoxidans subsp. denitrificans

BacDive ID	Other strains from **Achromobacter denitrificans** (33)	Type strain
318	A. denitrificans 12, 55B, DSM 30026, ATCC 15173, NCTC 8582, ... (type strain)
316	A. denitrificans DSM 4612, NCIB 11961
135302	A. denitrificans CIP 100014
135363	A. denitrificans CIP 100017
136801	A. denitrificans 81-75, CIP 100013
136804	A. denitrificans 111-75, CIP 100018
136807	A. denitrificans Aulb.court, CIP 60.83, CCUG 61949, LMG 1860, ...
136819	A. denitrificans 75-75, CIP 100011
136820	A. denitrificans 76-75, CIP 100012
136821	A. denitrificans 101-75, CIP 100015
136826	A. denitrificans 73-75, CIP 100010
136830	A. denitrificans 103-75, CIP 100016
137270	A. denitrificans 204-83, CIP 100140
137333	A. denitrificans 196-83, CIP 100142
137336	A. denitrificans 278.82, CIP 105844
137545	A. denitrificans 318-75, A3b, CIP 100020
138418	A. denitrificans CIP 102277
141232	A. denitrificans CCUG 307
141241	A. denitrificans CCUG 366, LMG 3459, LMG 3342
141246	A. denitrificans CCUG 379 A
141415	A. denitrificans CCUG 1608 A
141496	A. denitrificans CCUG 2368
141589	A. denitrificans CCUG 3353, IAM 12556, JCM 20635, LMG 3412, ...
143451	A. denitrificans CCUG 19225
145806	A. denitrificans CCUG 29644
147886	A. denitrificans CCUG 34433
152884	A. denitrificans CCUG 47876
154536	A. denitrificans CCUG 54280
156250	A. denitrificans CCUG 60861
156464	A. denitrificans CCUG 61950, LMG 26680
162416	A. denitrificans JCM 19165
162975	A. denitrificans JCM 20641, IAM 12563, NCIMB 10771
162976	A. denitrificans JCM 20642, IAM 12564, NCIMB 9550

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.182

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4510	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
4510	MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)		Medium recipe at MediaDive	Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4510	positive	growth	30	mesophilic

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
4510	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
4510	soil	Austria	AUT	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4510	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM1334309v1 assembly for Achromobacter denitrificans FDAARGOS_787	complete	GCA_013343095	32002.40	32002	95.89

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter denitrificans strain FDAARGOS_787 strain Not applicable
PATRIC: 32002.40

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.18	no
125438	anaerobic	anaerobicⓘ	no	97.34	no
125438	spore-forming	spore-formingⓘ	no	86.89	no
125438	aerobic	aerobicⓘ	yes	87.21	no
125438	thermophilic	thermophileⓘ	no	98.49	no
125438	flagellated	motile2+ⓘ	yes	84.82	no

Literature

References

#4510	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11850
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#68369	Automatically annotated from API 20NE .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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