Achromobacter denitrificans (CCUG 3353, IAM 12556, NCIMB 9387)

Name: Achromobacter denitrificans (CCUG 3353, IAM 12556, NCIMB 9387)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141589

Type strain

Culture col. no. CCUG 3353 IAM 12556 NCIMB 9387 LMG 3412 JCM 20635

NCBI tax ID(s) 32002

Special Collections CCUG JCM

History JCM <-- IAM 12556 (Achromobacter denitrificans) <-- NCIB 9387 (Alcaligenes faecalis) <-- T. Beppu AIC-1.

Links

Achromobacter denitrificans CCUG 3353 is a bacterium that was isolated from Soil or water using Ls-alloisocitrate.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 818

LMG 3412,NCIB 9387,NCIMB 9387,IAM12556,CCUG 3353,JCM 20635

@ref 20215

Last LPSN update 2026-05-29 08:39:59

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter denitrificans

Full scientific name Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003

Synonyms (3)

Achromobacter xylosoxidans subsp. denitrificans
Alcaligenes denitrificans
Alcaligenes xylosoxidans subsp. denitrificans

BacDive ID	Other strains from **Achromobacter denitrificans** (33)	Type strain
318	A. denitrificans 12, 55B, DSM 30026, ATCC 15173, NCTC 8582, ... (type strain)
316	A. denitrificans DSM 4612, NCIB 11961
317	A. denitrificans CMA1, DSM 11850
135302	A. denitrificans CIP 100014
135363	A. denitrificans CIP 100017
136801	A. denitrificans 81-75, CIP 100013
136804	A. denitrificans 111-75, CIP 100018
136807	A. denitrificans Aulb.court, CIP 60.83, CCUG 61949, LMG 1860, ...
136819	A. denitrificans 75-75, CIP 100011
136820	A. denitrificans 76-75, CIP 100012
136821	A. denitrificans 101-75, CIP 100015
136826	A. denitrificans 73-75, CIP 100010
136830	A. denitrificans 103-75, CIP 100016
137270	A. denitrificans 204-83, CIP 100140
137333	A. denitrificans 196-83, CIP 100142
137336	A. denitrificans 278.82, CIP 105844
137545	A. denitrificans 318-75, A3b, CIP 100020
138418	A. denitrificans CIP 102277
141232	A. denitrificans CCUG 307
141241	A. denitrificans CCUG 366, LMG 3459, LMG 3342
141246	A. denitrificans CCUG 379 A
141415	A. denitrificans CCUG 1608 A
141496	A. denitrificans CCUG 2368
143451	A. denitrificans CCUG 19225
145806	A. denitrificans CCUG 29644
147886	A. denitrificans CCUG 34433
152884	A. denitrificans CCUG 47876
154536	A. denitrificans CCUG 54280
156250	A. denitrificans CCUG 60861
156464	A. denitrificans CCUG 61950, LMG 26680
162416	A. denitrificans JCM 19165
162975	A. denitrificans JCM 20641, IAM 12563, NCIMB 10771
162976	A. denitrificans JCM 20642, IAM 12564, NCIMB 9550

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.828

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		94.783

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
44647	Soil or water using Ls-alloisocitrate
67770	Soil or water using allo-isocitrate as sole carbon source

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
67770	LMG 3412 assembly for Achromobacter deleyi LMG 3412	contig	GCA_902860095	1353891.8	1353891	34.66

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: LMG 3412 assembly for Achromobacter deleyi LMG 3412
BV-BRC: 1353891.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	87.93	no
125439	gram_stain	BacteriaNetⓘ	positive	52.42	no
125439	motility	BacteriaNetⓘ	yes	41.99	no
125439	spore_formation	BacteriaNetⓘ	no	94.78	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter deleyi strain LMG 3412
PATRIC: 1353891.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.83	no
125438	anaerobic	anaerobicⓘ	no	98.19	no
125438	spore-forming	spore-formingⓘ	no	88.86	no
125438	aerobic	aerobicⓘ	yes	88.83	no
125438	thermophilic	thermophileⓘ	no	98.96	yes
125438	flagellated	motile2+ⓘ	yes	83.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Multilocus sequence analysis of isolates of Achromobacter from patients with cystic fibrosis reveals infecting species other than Achromobacter xylosoxidans.	Ridderberg W, Wang M, Norskov-Lauritsen N.	J Clin Microbiol	10.1128/jcm.00728-12	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44647	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 3353
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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About us

Achromobacter denitrificans (CCUG 3353, IAM 12556, NCIMB 9387)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_902860095

Genome-based predictions

Predictions

Literature

Literature

References

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