Name: Achromobacter denitrificans CCUG 3353
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141589

Type strain:

Species: Achromobacter denitrificans

Culture col. no.: CCUG 3353, IAM 12556, JCM 20635, LMG 3412, NCIMB 9387

Strain history: IAM 12556 (Achromobacter denitrificans) <-- NCIB 9387 (Alcaligenes faecalis) <-- T. Beppu AIC-1.

NCBI tax ID(s): 32002 (species)

SI-ID 818

LMG 3412, NCIB 9387, NCIMB 9387, IAM12556, CCUG 3353, JCM 20635

Other strains from Achromobacter denitrificans

Section

Achromobacter denitrificans CCUG 3353 is a mesophilic, motile bacterium that was isolated from Soil or water using Ls-alloisocitrate.

motile
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Achromobacter*
	Species	**Achromobacter denitrificans**
	Full Scientific Name (LPSN)	Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003

	Synonym	Alcaligenes denitrificans
	Synonym	Achromobacter xylosoxidans subsp. denitrificans
	Synonym	Alcaligenes xylosoxidans subsp. denitrificans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #69480]	Motility	yes Confidence in %96.387

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.954

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44647]	Sample type/isolated from	Soil or water using Ls-alloisocitrate

[Ref.: #67770]	Sample type/isolated from	Soil or water using allo-isocitrate as sole carbon source
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Achromobacter deleyi LMG 3412	GCA_902860095	contig	GenBank	1353891 tax ID
[Ref.: #66792]	Achromobacter deleyi strain LMG 3412	1353891.8	wgs	PATRIC	1353891 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Achromobacter deleyi strain LMG 3412 PATRIC: 1353891.8
[Ref.: #69481]	spore-forming	no	87	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Achromobacter deleyi strain LMG 3412 PATRIC: 1353891.8
[Ref.: #69480]	motile	yes	89.32	no
[Ref.: #69480]	gram-positive	no	98.157	no
[Ref.: #69480]	anaerobic	no	98.57	no
[Ref.: #69480]	halophile	no	89.697	no
[Ref.: #69480]	spore-forming	no	93.509	no
[Ref.: #69480]	thermophile	no	99.809	no
[Ref.: #69480]	glucose-util	no	56.56	no
[Ref.: #69480]	flagellated	no	55.844	no
[Ref.: #69480]	aerobic	yes	88.328	no
[Ref.: #69480]	glucose-ferment	no	90.849	no

Availability in culture collections External links

[Ref.: #44647]

Culture collection no.

CCUG 3353, IAM 12556, JCM 20635, LMG 3412, NCIMB 9387

[Ref.: #97231]

SI-ID 818

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44647 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 3353

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#97231

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID818.1 )

* These data were automatically processed and therefore are not curated

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Achromobacter deleyi strain LMG 3412

Achromobacter deleyi strain LMG 3412

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