Name: Achromobacter denitrificans 12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 318

Type strain:

Species: Achromobacter denitrificans

Strain Designation: 12, 55B

Culture col. no.: DSM 30026, ATCC 15173, NCTC 8582, CCUG 407, LMG 1231, CIP 77.15, JCM 5490, LMG 3510, CECT 449

Strain history: <- ATCC <- R. Hugh, 12 <- L.R. Fredrich, 55B (Alcaligenes faecalis subsp. faecalis)

NCBI tax ID(s): 32002 (species)

Other strains from Achromobacter denitrificans

Section

Achromobacter denitrificans 12 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Betaproteobacteria
	Order	Burkholderiales
	Family	Alcaligenaceae
	Genus	Achromobacter
	Species	Achromobacter denitrificans
	Full Scientific Name (PNU)	Achromobacter denitrificans (Rüger and Tan 1983) Coenye et al. 2003

	Synonym	Alcaligenes denitrificans
	Synonym	Alcaligenes xylosoxidans subsp. denitrificans
	Synonym	Achromobacter xylosoxidans subsp. denitrificans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9090]

Culture medium

Nutrient agar (NA)

[Ref.: #9090]

Culture medium growth

[Ref.: #9090]

Culture medium link

Medium recipe at BacMedia

[Ref.: #9090]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9090]			growth	30 °C

[Ref.: #9090]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #44188]	1500	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #9090]	9522	+	+/-	+/-	+/-	+	-	+/-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	+	not determinedn.d.	not determinedn.d.	+	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9090]	Sample type/isolated from	soil

[Ref.: #44188]	Sample type/isolated from	Soil

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9090]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	A.xylosoxidans 16S ribosomal RNA, complete cds	M22509	1466	ENA	85698 tax ID	*
[Ref.: #20218]	Achromobacter denitrificans strain CCUG 407 16S ribosomal RNA gene, partial sequence	JQ746422	1309	ENA	32002 tax ID	*
[Ref.: #20218]	Achromobacter xylosoxidans subsp. denitrificans partial 16S rRNA gene, strain DSM 30026 (T)	AJ278451	1523	ENA	32002 tax ID	*
[Ref.: #20218]	Alcaligenes denitrificans 16S rRNA gene	Y14907	1489	ENA	32002 tax ID	*
[Ref.: #20218]	Achromobacter denitrificans gene for 16S rRNA, partial sequence, strain: NBRC 15125	AB680772	1456	ENA	32002 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Achromobacter denitrificans USDA-ARS-USMARC-56712	GCA_001514355	complete	GenBank	32002 tax ID	*
[Ref.: #66792]	Achromobacter denitrificans FDAARGOS_786	GCA_013267395	complete	GenBank	32002 tax ID	*
[Ref.: #66792]	Achromobacter denitrificans PheN1	GCA_003812265	complete	GenBank	32002 tax ID	*
[Ref.: #66792]	Achromobacter denitrificans PR1	GCA_002205315	complete	GenBank	32002 tax ID	*
[Ref.: #66792]	Achromobacter denitrificans FDAARGOS_787	GCA_013343095	complete	GenBank	32002 tax ID	*
[Ref.: #66792]	Achromobacter denitrificans FDAARGOS_788	GCA_013267375	complete	GenBank	32002 tax ID	*

Availability in culture collections External links

[Ref.: #9090]

Culture collection no.

DSM 30026, ATCC 15173, NCTC 8582, CCUG 407, LMG 1231, CIP 77.15, JCM 5490, LMG 3510, CECT 449

[Ref.: #20218]

Associated Passport(s) in StrainInfo

3321, 3317, 3328

References

#9090

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30026

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#44188 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 407

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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