Strain identifier

BacDive ID: 136807

Type strain: No

Species: Achromobacter denitrificans

Strain Designation: Aulb.court

Strain history: CIP <- 1960, Lab. Ident. Inst. Pasteur, Paris, France: strain Aulb.court

NCBI tax ID(s): 32002 (species)

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General

@ref: 36459

BacDive-ID: 136807

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile

description: Achromobacter denitrificans Aulb.court is an aerobe, mesophilic, motile bacterium that was isolated from Human,urine.

NCBI tax id

  • NCBI tax id: 32002
  • Matching level: species

strain history

@refhistory
364591960, Lab. Ident. Inst. Pasteur, Paris, France: strain Aulb.court
67770IAM 12595 <-- CIP, strain Aub.
36459CIP <- 1960, Lab. Ident. Inst. Pasteur, Paris, France: strain Aulb.court

doi: 10.13145/bacdive136807.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter denitrificans
  • full scientific name: Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003

  • synonyms

    @refsynonym
    20215Alcaligenes denitrificans
    20215Achromobacter xylosoxidans subsp. denitrificans
    20215Alcaligenes xylosoxidans subsp. denitrificans

@ref: 36459

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter denitrificans

strain designation: Aulb.court

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes94.676
6948099.995negative
36459yesnegativerod-shaped

colony morphology

@refincubation period
627441 day
36459

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36459MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
36459CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
36459positivegrowth30mesophilic
62744positivegrowth30mesophilic
67770positivegrowth30mesophilic
36459positivegrowth15-37
36459nogrowth5psychrophilic
36459nogrowth41thermophilic
36459nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
62744aerobe
36459obligate aerobe

spore formation

@refspore formationconfidence
69481no95
69480no99.995

halophily

@refsaltgrowthtested relationconcentration
36459NaClpositivegrowth0-6 %
36459NaClnogrowth8 %
36459NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
3645916947citrate+carbon source
364594853esculin-hydrolysis
36459606565hippurate+hydrolysis
3645917632nitrate+builds gas from
3645917632nitrate+reduction
3645916301nitrite+builds gas from
3645916301nitrite+reduction
3645915792malonate+assimilation
3645917632nitrate+respiration

antibiotic resistance

  • @ref: 36459
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
3645935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
3645915688acetoin-
3645917234glucose-

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
36459oxidase+
36459beta-galactosidase-3.2.1.23
36459alcohol dehydrogenase-1.1.1.1
36459gelatinase-
36459amylase-
36459DNase-
36459caseinase-3.4.21.50
36459catalase+1.11.1.6
36459tween esterase-
36459gamma-glutamyltransferase-2.3.2.2
36459lecithinase-
36459lipase-
36459lysine decarboxylase-4.1.1.18
36459ornithine decarboxylase-4.1.1.17
36459phenylalanine ammonia-lyase-4.3.1.24
36459protease-
36459tryptophan deaminase-
36459urease-3.5.1.5
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
62744-----+--------------
36459-++--+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
62744+---------------+++++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36459-------------------------------------------+++-++++-++----+--+---+++-----+-+--+++++--+-++++++++-+++

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinent
62744Human,urine1966FranceFRAEurope
67770Urine
36459Human, Urine

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Urine
#Host#Human

Safety information

risk assessment

  • @ref: 36459
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter denitrificans strain LMG 186032002.37wgspatric32002
67770Achromobacter denitrificans LMG 1860GCA_902859985contigncbi32002

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno95no
gram-positiveno98.346no
anaerobicno98.566yes
halophileno88.002no
spore-formingno93.879no
glucose-utilno70.285yes
flagellatedno58.362no
aerobicyes84.225no
thermophileno99.528yes
motileyes86.675no
glucose-fermentno89.961yes

External links

@ref: 36459

culture collection no.: CIP 60.83, CCUG 61949, LMG 1860, JCM 20672, IAM 12595

straininfo link

  • @ref: 93862
  • straininfo: 13568

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36459Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2060.83Collection of Institut Pasteur (CIP 60.83)
62744Curators of the CCUGhttps://www.ccug.se/strain?id=61949Culture Collection University of Gothenburg (CCUG) (CCUG 61949)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93862Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID13568.1