Acetivibrio straminisolvens (DSM 16021, IAM 15070, CSK1)

Name: Acetivibrio straminisolvens (DSM 16021, IAM 15070, CSK1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2827

Type strain

Strain Designation CSK1

Culture col. no. DSM 16021 IAM 15070 CSK1 NBRC 103399 JCM 21531

NCBI tax ID(s) 1294263 253314

Special Collections DSMZ JCM Literature strains

Links

Acetivibrio straminisolvens CSK1 is an anaerobe, spore-forming, thermophilic prokaryote that forms circular colonies and was isolated from a bacterial community constructed from composting processes.

spore-forming filament-shaped colony-forming anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 134417

DSM 16021,IAM 15070,JCM 21531,NBRC 103399

@ref 20215

Last LPSN update 2025-12-16 09:47:24

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Acetivibrio

Species Acetivibrio straminisolvens

Full scientific name Acetivibrio straminisolvens (Kato et al. 2004) Tindall 2019

Synonyms (2)

Clostridium straminisolvens
Hungateiclostridium straminisolvens

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Motility
23077	3.0-8.0 µm	0.5-1.0 µm	filament-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
23077	1.0-2.0 mm	tan-yellow	circular	cellobiose agar medium

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6145	ACETIVIBRIO MEDIUM (DSMZ Medium 122)	Medium recipe at MediaDive	Name: ACETIVIBRIO MEDIUM (DSMZ Medium 122) Composition: Cellulose 10.0 g/l (optional) Na2-ß-glycerophosphate x 5 H2O 6.0 g/l K2HPO4 5.5 g/l Cellobiose 5.0 g/l Yeast extract 4.5 g/l MgCl2 x 6 H2O 2.6 g/l KH2PO4 1.43 g/l (NH4)2SO4 1.3 g/l L-Glutathione 0.25 g/l CaCl2 x 2 H2O 0.13 g/l FeSO4 x 7 H2O 0.0011 g/l Sodium resazurin 0.0005 g/l Distilled water
23077	cellobiose agar medium
23077	medium 122		containing (per litre distilled water): (NH4)2SO4 , 1.3 g; MgCl2.6H2O, 2.6 g; KH2PO4 , 1.43 g; K2HPO4.3H2O, 7.2 g; CaCl2.6H2O, 0.13 g; FeSO4.7H2O, 1.1 mg; sodium b-glycerophosphate, 6.0 g; yeast extract, 4.5 g; filter paper, ball-milled cellulose or cellobiose, 10 g; glutathione (reduced), 0.25 g; and resazurin, 1 mg

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6145	positive	growth	50	thermophilic
23077	negative	growth	<45.0
23077	negative	growth	>65.0
23077	positive	optimum	50.0-55.0	thermophilic
67770	positive	growth	50	thermophilic

Culture pH

@ref	Ability	Type	PH
23077	positive	optimum	7.5
23077	positive	growth	6.0-8.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
6145	anaerobe
23077	anaerobe
125438	anaerobe
125439	anaerobe

Spore formation

@ref	Spore description	Type of spore	Spore formation
23077	oval,subterminal,0.5-1.0 x 1.0-1.5 µm	spore

Metabolite utilization

@ref	Metabolite	Utilization activity	Kind of utilization tested
23077	casein	-	degradation
23077	esculin	+	hydrolysis
23077	nitrate	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23077	35581 ChEBI	indole

Enzymes

@ref	Value	Activity
23077	lecithinase	-
23077	lipase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting
#Environmental	#Microbial community	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6145	a bacterial community constructed from composting processes	Japan	JPN	Asia
23077
67770	Straw-degrading bacterial community

Taxonmaps

69479

Global distribution of 16S sequence AB125279 (>99% sequence identity) for Acetivibrio straminisolvens subclade from Microbeatlas

Aquatic Samples	41
Soil Samples	88
Animal Samples	35
Plant Samples	31
Total Samples	195

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6145	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM52146v1 assembly for Acetivibrio straminisolvens JCM 21531	contig	GCA_000521465	1294263.7	2772190653	1294263	18.08
66792	Clostridium straminisolvens JCM 21531	contig		1294263.3		1294263	7

Genome browser: GCA_000521465

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6145	Clostridium straminisolvens gene for 16S rRNA, partial sequence	AB125279	1447		253314

GC content

@ref	GC-content (mol%)
6145	41.3
23077	41.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acetivibrio straminisolvens JCM 21531
NCBI: GCA_000521465

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no
125439	gram_stain	BacteriaNetⓘ	variable	81.10	no
125439	motility	BacteriaNetⓘ	yes	72.70	no
125439	spore_formation	BacteriaNetⓘ	yes	74.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium straminisolvens JCM 21531
PATRIC: 1294263.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	60.84	no
125438	anaerobic	anaerobicⓘ	yes	92.76	no
125438	spore-forming	spore-formingⓘ	yes	82.61	yes
125438	aerobic	aerobicⓘ	no	96.19	yes
125438	thermophilic	thermophileⓘ	yes	61.68	yes
125438	flagellated	motile2+ⓘ	yes	78.65	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community.	Yuki M, Oshima K, Suda W, Sakamoto M, Kitamura K, Iida T, Hattori M, Ohkuma M	Genome Announc	10.1128/genomeA.00110-14	2014
Phylogeny	Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge.	Shiratori H, Sasaya K, Ohiwa H, Ikeno H, Ayame S, Kataoka N, Miya A, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.003483-0	2009
Phylogeny	Clostridium straminisolvens sp. nov., a moderately thermophilic, aerotolerant and cellulolytic bacterium isolated from a cellulose-degrading bacterial community.	Kato S, Haruta S, Cui ZJ, Ishii M, Yokota A, Igarashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.63148-0	2004

References

#6145	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16021
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23077	Souichiro Kato,Shin Haruta,Zong Jun Cui,Masaharu Ishii,Akira Yokota,Yasuo Igarashi: Clostridium straminisolvens sp. nov., a moderately thermophilic, aerotolerant and cellulolytic bacterium isolated from a cellulose-degrading bacterial community. IJSEM 54: 2043 - 2047 2004 ( DOI 10.1099/ijs.0.63148-0 , PubMed 15545431 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Acetivibrio straminisolvens (DSM 16021, IAM 15070, CSK1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000521465

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media