Name: Acetivibrio straminisolvens CSK1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2827

Type strain:

Species: Acetivibrio straminisolvens

Strain Designation: CSK1

Culture col. no.: DSM 16021, IAM 15070, JCM 21531, NBRC 103399

Strain history: IAM 15070 <-- S. Kato CSK1.

NCBI tax ID(s): 1294263 (strain), 253314 (species)

SI-ID 134417

DSM 16021, IAM 15070, JCM 21531, NBRC 103399

Special Collections

Section

Acetivibrio straminisolvens CSK1 is an anaerobe, spore-forming, thermophilic bacterium that forms circular colonies and was isolated from a bacterial community constructed from composting processes.

colony-forming
filament-shaped
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Acetivibrio*
	Species	**Acetivibrio straminisolvens**
	Full Scientific Name (LPSN)	Acetivibrio straminisolvens (Kato et al. 2004) Tindall 2019

	Synonym	Clostridium straminisolvens
	Synonym	Hungateiclostridium straminisolvens

Information on morphological and physiological properties Morphology

[Ref.: #23077]	Cell length	3.0-8.0 µm

[Ref.: #23077]	Cell width	0.5-1.0 µm

[Ref.: #23077]	Cell shape	filament-shaped

[Ref.: #23077]	Motility	no

[Ref.: #23077]	Colony size	1.0-2.0 mm
[Ref.: #23077]	Colony color	tan-yellow
[Ref.: #23077]	Colony shape	circular
[Ref.: #23077]	Cultivation medium used	cellobiose agar medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6145]

Culture medium

ACETIVIBRIO MEDIUM (DSMZ Medium 122)

[Ref.: #6145]

Culture medium growth

[Ref.: #6145]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6145]

Culture medium composition

expand / minimize

[Ref.: #23077]

Culture medium

cellobiose agar medium

[Ref.: #23077]

Culture medium growth

[Ref.: #23077]

Culture medium

medium 122

[Ref.: #23077]

Culture medium growth

[Ref.: #23077]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #6145]		growth	50 °C
[Ref.: #23077]	no	growth	<45.0 °C
[Ref.: #23077]	no	growth	>65.0 °C
[Ref.: #23077]		optimum	50.0-55.0 °C
[Ref.: #67770]		growth	50 °C

	pH	Kind of pH		pH
[Ref.: #23077]			optimum	7.5
[Ref.: #23077]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6145]	Oxygen tolerance	anaerobe
[Ref.: #23077]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %92.76

[Ref.: #23077]	Spore description	oval,subterminal,0.5-1.0 x 1.0-1.5 µm
[Ref.: #23077]	Type of spore	spore
[Ref.: #23077]	Ability of spore formation	yes

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23077]	casein	-	degradation
[Ref.: #23077]	esculin ChEBI	+	hydrolysis
[Ref.: #23077]	nitrate ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #23077]		indole ChEBI	no

	Enzymes	Enzyme	Enzyme activity
[Ref.: #23077]		lecithinase	-
[Ref.: #23077]		lipase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6145]	Sample type/isolated from	a bacterial community constructed from composting processes
[Ref.: #6145]	Country	Japan
[Ref.: #6145]	Country ISO 3 Code	JPN
[Ref.: #6145]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Straw-degrading bacterial community

[Ref.: #23077]	Enrichment culture	liquid medium
[Ref.: #23077]	Enrichment culture composition	containing (per litre distilled water):yeast extract, 1 g; peptone, 5 g; CaCO3 , 2 g; NaCl, 5 g; dried rice straw, 10 g
[Ref.: #23077]	Enrichment culture temperature	50.0 ̊C
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Environmental	#Microbial community	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB125279 (>99% sequence identity) for Acetivibrio straminisolvens subclade from Microbeatlas

Aquatic Samples	41
Soil Samples	88
Animal Samples	35
Plant Samples	31
Total Samples	195

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6145]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6145]	Clostridium straminisolvens gene for 16S rRNA, partial sequence	AB125279	1447	GenBank ENA	253314 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acetivibrio straminisolvens JCM 21531	GCA_000521465	contig	GenBank ENA	1294263 tax ID
[Ref.: #66792]	Clostridium straminisolvens JCM 21531	1294263.3	wgs	PATRIC	1294263 tax ID	*
[Ref.: #66792]	Hungateiclostridium straminisolvens JCM 21531	2772190653	draft	JGI IMG/M	1294263 tax ID	*

[Ref.: #6145]	GC-content	41.3 mol%
[Ref.: #23077]	GC-content	41.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium straminisolvens JCM 21531 PATRIC: 1294263.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	60	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium straminisolvens JCM 21531 PATRIC: 1294263.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	60.838	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	92.76	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	82.608	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.192	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	61.683	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.649	no

Availability in culture collections External links

[Ref.: #6145]

Culture collection no.

DSM 16021, IAM 15070, JCM 21531, NBRC 103399

[Ref.: #72351]

SI-ID 134417

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community.	Yuki M, Oshima K, Suda W, Sakamoto M, Kitamura K, Iida T, Hattori M, Ohkuma M	Genome Announc	10.1128/genomeA.00110-14	2014	*
Phylogeny	Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge.	Shiratori H, Sasaya K, Ohiwa H, Ikeno H, Ayame S, Kataoka N, Miya A, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.003483-0	2009	*
Phylogeny	Clostridium straminisolvens sp. nov., a moderately thermophilic, aerotolerant and cellulolytic bacterium isolated from a cellulose-degrading bacterial community.	Kato S, Haruta S, Cui ZJ, Ishii M, Yokota A, Igarashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.63148-0	2004	*

References

#6145

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16021

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23077

Souichiro Kato,Shin Haruta,Zong Jun Cui,Masaharu Ishii,Akira Yokota,Yasuo Igarashi: Clostridium straminisolvens sp. nov., a moderately thermophilic, aerotolerant and cellulolytic bacterium isolated from a cellulose-degrading bacterial community. IJSEM 54: 2043 - 2047 2004 ( DOI 10.1099/ijs.0.63148-0 , PubMed 15545431 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72351

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134417.1 )

* These data were automatically processed and therefore are not curated

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