Arabidopsis-Microbiome Dashboard
The Arabidopsis-Microbiome project contains microbial strains isolated from leaves and roots of healthy Arabidopsis thaliana plants and deposited at the Leibniz Institute DSMZ in connection with the following publication: Bai, Y., Müller, D. B., Srinivas, G., Garrido-Oter, R., Potthoff, E., Rott, M., Dombrowski, N., Münch, P. C., Spaepen, S., Remus-Emsermann, M., Hüttel, B., McHardy, A. C., Vorholt, J. A., Schulze-Lefert, P. (2015). Functional overlap of the Arabidopsis leaf and root microbiota. Nature 528 ( 7582 ): 364-9 . https://doi.org/10.1038/nature16192
Total strains
434
434
Total species
1
1
Mean temperature optimum
28 C°
28 C°
16S sequence accessions
2
2
| BacDive ID | Type strain | Species | Culture col. no. | NCBI tax ID(s) |
|---|---|---|---|---|
| 131581 |  |
Acidovorax sp. | DSM 102361 | 1872122 (species) |
| 131582 | |
Acidovorax sp. | DSM 102362 | 1872122 (species) |
| 131583 | |
Acidovorax sp. | DSM 102363 | 1872122 (species) |
| 131584 | |
Acidovorax sp. | DSM 102364 | 1872122 (species) |
| 131585 | |
Acidovorax sp. | DSM 102367 | 1872122 (species) |
| 131586 | |
Acidovorax sp. | DSM 102560 | 1872122 (species) |
| 131587 | |
Acidovorax sp. | DSM 102561 | 1872122 (species) |
| 131588 | |
Acidovorax sp. | DSM 102562 | 1872122 (species) |
| 131589 | |
Acidovorax sp. | DSM 102563 | 1872122 (species) |
| 131590 | |
Acidovorax sp. | DSM 102564 | 1872122 (species) |
| 131591 | |
Acidovorax sp. | DSM 102565 | 1872122 (species) |
| 131592 | |
Acidovorax sp. | DSM 102566 | 1872122 (species) |
| 132688 | |
Acinetobacter sp. | DSM 102368 | 472 (species) |
| 132689 | |
Acinetobacter sp. | DSM 102567 | 472 (species) |
| 131597 | |
Aeromicrobium sp. | DSM 102280 | 1871063 (species) |
| 131598 | |
Aeromicrobium sp. | DSM 102281 | 1871063 (species) |
| 131599 | |
Aeromicrobium sp. | DSM 102282 | 1871063 (species) |
| 131600 | |
Aeromicrobium sp. | DSM 102283 | 1871063 (species) |
| 131601 | |
Aeromicrobium sp. | DSM 102284 | 1871063 (species) |
| 131602 | |
Aeromicrobium sp. | DSM 102285 | 1871063 (species) |
| 131603 | |
Aeromicrobium sp. | DSM 102310 | 1871063 (species) |
| 131604 | |
Aeromicrobium sp. | DSM 102311 | 1871063 (species) |
| 131605 | |
Aeromicrobium sp. | DSM 102312 | 1871063 (species) |
| 132894 | |
Afipia sp. | DSM 102369 | 1871052 (species) |
| 132296 | |
Agreia sp. | DSM 102279 | 1872416 (species) |
| 132297 | |
Agreia sp. | DSM 102313 | 1872416 (species) |
| 132298 | |
Agreia sp. | DSM 102314 | 1872416 (species) |
| 132299 | |
Agreia sp. | DSM 102315 | 1872416 (species) |
| 132300 | |
Agromyces sp. | DSM 102276 | 51513 (species) |
| 132301 | |
Agromyces sp. | DSM 102277 | 51513 (species) |
| 132302 | |
Agromyces sp. | DSM 102278 | 51513 (species) |
| 132303 | |
Agromyces sp. | DSM 102323, Soil 535 | 51513 (species) |
| 132317 | |
Altererythrobacter sp. | DSM 102370 | 1872480 (species) |
| 131248 | |
Aminobacter sp. | DSM 101952 | 2735891 (species) |
| 132112 | |
Angustibacter sp. | DSM 102371 | 1871064 (species) |
| 131608 | |
Arthrobacter sp. | DSM 102320 | 1667 (species) |
| 131609 | |
Arthrobacter sp. | DSM 102321 | 1667 (species) |
| 131610 | |
Arthrobacter sp. | DSM 102322 | 1667 (species) |
| 131611 | |
Arthrobacter sp. | DSM 102335 | 1667 (species) |
| 131612 | |
Arthrobacter sp. | DSM 102336 | 1667 (species) |
| 131613 | |
Arthrobacter sp. | DSM 102337 | 1667 (species) |
| 131614 | |
Arthrobacter sp. | DSM 102338, Soil 736 | 1667 (species) |
| 131615 | |
Arthrobacter sp. | DSM 102339, Soil 761 | 1667 (species) |
| 131616 | |
Arthrobacter sp. | DSM 102340, Soil 762 | 1667 (species) |
| 131617 | |
Arthrobacter sp. | DSM 102767, Soil 782 | 1667 (species) |
| 131618 | |
Arthrobacter sp. | DSM 102768, Soil 763 | 1667 (species) |
| 131619 | |
Arthrobacter sp. | DSM 102769, Soil 764 | 1667 (species) |
| 131620 | |
Arthrobacter sp. | DSM 102770, Soil 783 | 1667 (species) |
| 132138 | |
Aurantimonas sp. | DSM 102568 | 1872654 (species) |
| 132139 | |
Aurantimonas sp. | DSM 102569 | 1872654 (species) |
| 132140 | |
Aurantimonas sp. | DSM 102570 | 1872654 (species) |
| 132141 | |
Aurantimonas sp. | DSM 102571 | 1872654 (species) |
| 132311 | |
Aureimonas sp. | DSM 102572 | 1872658 (species) |
| 131639 | |
Bacillus sp. | DSM 102376 | 1409 (species) |
| 131640 | |
Bacillus sp. | DSM 102377 | 1409 (species) |
| 131641 | |
Bacillus sp. | DSM 102372 | 1409 (species) |
| 131642 | |
Bacillus sp. | DSM 102373 | 1409 (species) |
| 131643 | |
Bacillus sp. | DSM 102374 | 1409 (species) |
| 131644 | |
Bacillus sp. | DSM 102375 | 1409 (species) |
| 131645 | |
Bacillus sp. | DSM 102573 | 1409 (species) |
| 131646 | |
Bacillus sp. | DSM 102574 | 1409 (species) |
| 131647 | |
Bacillus sp. | DSM 102575 | 1409 (species) |
| 131648 | |
Bacillus sp. | DSM 102576 | 1409 (species) |
| 131649 | |
Bacillus sp. | DSM 102771, Soil 531 | 1409 (species) |
| 131650 | |
Bacillus sp. | DSM 102772, Soil 745 | 1409 (species) |
| 131651 | |
Bacillus sp. | DSM 102773 | 1409 (species) |
| 132718 | |
Bordetella sp. | DSM 102378 | 28081 (species) |
| 132719 | |
Bordetella sp. | DSM 102379 | 28081 (species) |
| 132075 | |
Bosea sp. | DSM 102381 | 211457 (species) |
| 132076 | |
Bosea sp. | DSM 102382 | 211457 (species) |
| 132077 | |
Bosea sp. | DSM 102383 | 211457 (species) |
| 132078 | |
Bosea sp. | DSM 102578 | 211457 (species) |
| 131657 | |
Bradyrhizobium sp. | DSM 102579 | 376 (species) |
| 131658 | |
Bradyrhizobium sp. | DSM 102580 | 376 (species) |
| 131659 | |
Brevibacillus sp. | DSM 102581 | 1882945 (species) |
| 131661 | |
Brevundimonas sp. | DSM 102239 | 1871086 (species) |
| 131662 | |
Brevundimonas sp. | DSM 102384 | 1871086 (species) |
| 131663 | |
Brevundimonas sp. | DSM 102388 | 1871086 (species) |
| 131664 | |
Brevundimonas sp. | DSM 102582 | 1871086 (species) |
| 131665 | |
Brevundimonas sp. | DSM 102583 | 1871086 (species) |
| 132724 | |
Burkholderia sp. | DSM 102584 | 36773 (species) |
| 131667 | |
Caulobacter sp. | DSM 102389 | 78 (species) |
| 131668 | |
Caulobacter sp. | DSM 102391 | 78 (species) |
| 131669 | |
Caulobacter sp. | DSM 102392 | 78 (species) |
| 131670 | |
Caulobacter sp. | DSM 102393 | 78 (species) |
| 131671 | |
Caulobacter sp. | DSM 102395 | 78 (species) |
| 131678 | |
Cellulomonas sp. | DSM 102398 | 40001 (species) |
| 131679 | |
Cellulomonas sp. | DSM 102396 | 40001 (species) |
| 131680 | |
Cellulomonas sp. | DSM 102397 | 40001 (species) |
| 131681 | |
Cellulomonas sp. | DSM 102585 | 40001 (species) |
| 131682 | |
Cellulomonas sp. | DSM 102586 | 40001 (species) |
| 131672 | |
Chryseobacterium sp. | DSM 102587 | 1871047 (species) |
| 131673 | |
Chryseobacterium sp. | DSM 102588 | 1871047 (species) |
| 131674 | |
Chryseobacterium sp. | DSM 102589 | 1871047 (species) |
| 131675 | |
Chryseobacterium sp. | DSM 102590 | 1871047 (species) |
| 131676 | |
Chryseobacterium sp. | DSM 102591 | 1871047 (species) |
| 131677 | |
Chryseobacterium sp. | DSM 102592 | 1871047 (species) |
| 131690 | |
Cupriavidus sp. | DSM 102399 | 1873897 (species) |
| 131693 | |
Curtobacterium flaccumfaciens | DSM 102595 | 2035 (species) |
| 131691 | |
Curtobacterium sp. | DSM 102593 | 1869344 (species) |
Taxonomy
Morphology
Cultivation
Metabolism
Isolation sources
Molecular biology & pathogenicity
Tests & profiles
Special Collections
- DZIF
- Mouse-Microbiome
- Pig-Microbiome
- Chicken-Microbiome
- Arabidopsis-Microbiome
- ESA
- Reichenbach collection of Myxobacteria
- Wink compendium of Actinobacteria
- Culture Collection University Of Gothenburg
- Collection de l’Institut Pasteur
- Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen
- Japan Collection of Microorganisms
- Korean Collection for Type Cultures
- University of Coimbra Bacteria Culture Collection
- Strains from literature