Achromobacter mucicolens (CIP 60.81, ATCC 13138, LMG 3415)

Name: Achromobacter mucicolens (CIP 60.81, ATCC 13138, LMG 3415)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136829

Type strain

Culture col. no. CIP 60.81 ATCC 13138 LMG 3415 IAM 12594 JCM 20671 1 more

NCBI tax ID(s) 1389922

Special Collections JCM CIP

History IAM 12594 <-- CIP 60.81 <-- P. Thibault <-- R. Hugh 1323 (628-3). R. Hugh 1323. CIP <- 1960, R. Hugh: strain 228-3, Achromobacter xylosoxidans denitrificans

Links

Achromobacter mucicolens CIP 60.81 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from Buccal carvity of patient with laryngeal cancer.

Gram-negative motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 820

LMG 3415,ATCC 13138,IAM 12594,JCM 9658,CCM 2984,CIP 60.81,JCM 20671

@ref 20215

Last LPSN update 2025-12-16 10:02:40

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter mucicolens

Full scientific name Achromobacter mucicolens Vandamme et al. 2013

BacDive ID	Other strains from **Achromobacter mucicolens** (7)	Type strain
130143	A. mucicolens AU 13054, R-46658, DSM 29602, LMG 26685, ... (type strain)
154540	A. mucicolens CCUG 54301
156473	A. mucicolens CCUG 61960, LMG 26684
156474	A. mucicolens CCUG 61962, LMG 26686
156475	A. mucicolens CCUG 61963, LMG 26687
156476	A. mucicolens CCUG 61964, LMG 26688
176934	A. mucicolens CT11-123, DSM 115945

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125438	negative			96.418
36500	negative	rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
36500	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
36500	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
36500	positive	growth	37	mesophilic
36500	positive	growth	15-41
36500	negative	growth	5
36500	negative	growth	45
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
36500	obligate aerobe
125438	aerobe	91.047
125439	obligate aerobe	93.5

Spore formation

@ref	Spore formation	Confidence
125439		91.7
36500

Halophily

@ref	Salt	Growth	Tested relation	Concentration
36500	NaCl	positive	growth	0-8 %
36500	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
36500	16947 ChEBI	citrate	+	carbon source
36500	4853 ChEBI	esculin	-	hydrolysis
36500	606565 ChEBI	hippurate	-	hydrolysis
36500	15792 ChEBI	malonate	-	assimilation
36500	17632 ChEBI	nitrate	+	builds gas from
36500	17632 ChEBI	nitrate	+	reduction
36500	17632 ChEBI	nitrate	+	respiration
36500	16301 ChEBI	nitrite	+	builds gas from
36500	16301 ChEBI	nitrite	+	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
36500	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
36500	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
36500	15688 ChEBI	acetoin	-
36500	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
36500	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
36500	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
36500	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
36500	caseinase	-	3.4.21.50
36500	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
36500	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
36500	gamma-glutamyltransferase	-	2.3.2.2
36500	gelatinase	-
36500	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
36500	lipase	-
68382	lipase (C 14)	-		from API zym
36500	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
36500	ornithine decarboxylase	-	4.1.1.17
36500	oxidase	+
36500	phenylalanine ammonia-lyase	-	4.3.1.24
36500	protease	-
68382	trypsin	-	3.4.21.4	from API zym
36500	tryptophan deaminase	-
36500	tween esterase	-
36500	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
36500	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
36500	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	+	+	+	-	+	+	-	-	-	-	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-	+	-	+	-	-	+	+	+	-	+	-	-	-	-	-	+	+	+	+	-	-	-	-	+	+	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Isolation date
67770	Buccal carvity of patient with laryngeal cancer
36500	Human, Buccal cavity with laryngeal cancer	1957

Taxonmaps

69479

Global distribution of 16S sequence LC506136 (>99% sequence identity) for Achromobacter from Microbeatlas

Aquatic Samples	362
Soil Samples	273
Animal Samples	742
Plant Samples	143
Total Samples	1520

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
36500	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	LMG 3415 assembly for Achromobacter mucicolens LMG 3415	contig	GCA_902859995	1389922.7	1389922	74.08

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Achromobacter denitrificans JCM 9658 gene for 16S ribosomal RNA, partial sequence	LC506136	1453		32002

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter mucicolens LMG 3415
NCBI: GCA_902859995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.70	no
125439	motility	BacteriaNetⓘ	yes	68.70	no
125439	gram_stain	BacteriaNetⓘ	negative	89.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter mucicolens strain LMG 3415
PATRIC: 1389922.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.42	no
125438	anaerobic	anaerobicⓘ	no	98.13	yes
125438	spore-forming	spore-formingⓘ	no	89.74	no
125438	aerobic	aerobicⓘ	yes	91.05	yes
125438	thermophilic	thermophileⓘ	no	98.89	yes
125438	flagellated	motile2+ⓘ	yes	86.61	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36500	Collection of Institut Pasteur ; Curators of the CIP; CIP 60.81
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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