Name: Achromobacter mucicolens CIP 60.81
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 136829

Type strain:

Species: Achromobacter mucicolens

Culture col. no.: CIP 60.81, ATCC 13138, JCM 20671, IAM 12594, LMG 3415, JCM 9658

Strain history: CIP <- 1960, R. Hugh: strain 228-3, Achromobacter xylosoxidans denitrificans

NCBI tax ID(s): 217203 (species)

Other strains from Achromobacter mucicolens

A. mucicolens AU 13054, R-46658, DSM 29602, LMG ... (type strain)
A. mucicolens CCUG 54301
A. mucicolens CCUG 61960, LMG 26684
A. mucicolens CCUG 61962, LMG 26686
A. mucicolens CCUG 61963, LMG 26687
A. mucicolens CCUG 61964, LMG 26688

Section

Achromobacter mucicolens CIP 60.81 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Buccal carvity of patient with laryngeal cancer.

Gram-negative
motile
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Achromobacter*
	Species	**Achromobacter mucicolens**
	Full Scientific Name (LPSN)	Achromobacter mucicolens Vandamme et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #36500]	Gram stain	negative

[Ref.: #36500]	Cell shape	rod-shaped

[Ref.: #36500]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36500]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #36500]

Culture medium growth

[Ref.: #36500]

Culture medium composition

expand / minimize

[Ref.: #36500]

Culture medium

CIP Medium 3

[Ref.: #36500]

Culture medium growth

[Ref.: #36500]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #36500]		growth	37 °C
[Ref.: #36500]		growth	15-41 °C
[Ref.: #36500]	no	growth	5 °C
[Ref.: #36500]	no	growth	45 °C
[Ref.: #67770]		growth	30 °C

[Ref.: #36500]	Temperature range	mesophilic
[Ref.: #36500]	Temperature range	psychrophilic
[Ref.: #36500]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #36500]

Oxygen tolerance

obligate aerobe

[Ref.: #36500]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #36500]		NaCl		growth	0-8	%
[Ref.: #36500]		NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #36500]	citrate ChEBI	+	carbon source
[Ref.: #36500]	esculin ChEBI	-	hydrolysis
[Ref.: #36500]	hippurate ChEBI	-	hydrolysis
[Ref.: #36500]	malonate ChEBI	-	assimilation
[Ref.: #36500]	nitrate ChEBI	+	builds gas from
[Ref.: #36500]	nitrate ChEBI	+	reduction
[Ref.: #36500]	nitrate ChEBI	+	respiration
[Ref.: #36500]	nitrite ChEBI	+	builds gas from
[Ref.: #36500]	nitrite ChEBI	+	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #36500]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #36500]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #36500]		acetoin ChEBI	-
[Ref.: #36500]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #36500]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #36500]	amylase	-
[Ref.: #36500]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #36500]	caseinase	-	3.4.21.50
[Ref.: #36500]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #36500]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #36500]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #36500]	gelatinase	-
[Ref.: #36500]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #36500]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #36500]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #36500]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #36500]	oxidase	+
[Ref.: #36500]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #36500]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #36500]	tryptophan deaminase	-
[Ref.: #36500]	tween esterase	-
[Ref.: #36500]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #36500]	3169	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	+	+	+	-	+	+	-	-	-	-	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-	+	-	+	-	-	+	+	+	-	+	-	-	-	-	-	+	+	+	+	-	-	-	-	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #36500]	13006	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Buccal carvity of patient with laryngeal cancer

[Ref.: #36500]	Sample type/isolated from	Human, Buccal cavity with laryngeal cancer
[Ref.: #36500]	Isolation date	1957
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC506136 (>99% sequence identity) for Achromobacter from Microbeatlas

Aquatic Samples	362
Soil Samples	273
Animal Samples	742
Plant Samples	143
Total Samples	1520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #36500]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Achromobacter denitrificans JCM 9658 gene for 16S ribosomal RNA, partial sequence	LC506136	1453	ENA	32002 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Achromobacter mucicolens LMG 3415	GCA_902859995	contig	GenBank	1389922 tax ID	*
[Ref.: #66792]	Achromobacter mucicolens strain LMG 3415	1389922.7	wgs	PATRIC	1389922 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Achromobacter mucicolens strain LMG 3415 PATRIC: 1389922.7
[Ref.: #69480]	motile	yes	87.097	no
[Ref.: #69480]	gram-positive	no	98.528	no
[Ref.: #69480]	anaerobic	no	98.478	no
[Ref.: #69480]	halophile	no	87.904	no
[Ref.: #69480]	spore-forming	no	95.804	no
[Ref.: #69480]	glucose-util	no	70.352	no
[Ref.: #69480]	thermophile	no	99.488	yes
[Ref.: #69480]	aerobic	yes	90.237	no
[Ref.: #69480]	flagellated	no	65.894	no
[Ref.: #69480]	glucose-ferment	no	90.086	no

Availability in culture collections External links

[Ref.: #36500]

Culture collection no.

CIP 60.81, ATCC 13138, JCM 20671, IAM 12594, LMG 3415, JCM 9658

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36500 Collection of Institut Pasteur ; Curators of the CIP; CIP 60.81

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Achromobacter mucicolens strain LMG 3415

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