Name: Acetivibrio saccincola JCM 31827
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164132

Type strain:

Species: Acetivibrio saccincola

Culture col. no.: JCM 31827, DSM 104321

Strain history: A. Kosugi; JIRCAS, Japan; A7.

NCBI tax ID(s): 1677857 (species)

Other strains from Acetivibrio saccincola

A. saccincola GGR1, DSM 101079, CECT 9155 (type strain)

Section

Acetivibrio saccincola JCM 31827 is a thermophilic bacterium that was isolated from Cellulose-degrading bacterial community inhabiting bovine manure compost on Ishigaki Island.

thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Acetivibrio*
	Species	**Acetivibrio saccincola**
	Full Scientific Name (PNU)	Acetivibrio saccincola (Koeck et al. 2016) Tindall 2019

	Synonym	Herbivorax saccincola
	Synonym	Hungateiclostridium saccincola

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	55 °C

[Ref.: #67770]

Temperature range

thermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Cellulose-degrading bacterial community inhabiting bovine manure compost on Ishigaki Island
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KX714804 (>99% sequence identity) for Acetivibrio saccincola subclade from Microbeatlas

Aquatic Samples	988
Soil Samples	4138
Animal Samples	1026
Plant Samples	1183
Total Samples	7335

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium sp. strain A7 16S ribosomal RNA gene, partial sequence	KX714804	1485	ENA	1506 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acetivibrio saccincola A7	GCA_002969215	contig	GenBank	1677857 tax ID
[Ref.: #66792]	Herbivorax saccincola strain A7	1677857.4	wgs	PATRIC	1677857 tax ID	*

[Ref.: #67770]

GC-content

34.9 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31827, DSM 104321

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Characterization and high-quality draft genome sequence of Herbivorax saccincola A7, an anaerobic, alkaliphilic, thermophilic, cellulolytic, and xylanolytic bacterium.	Aikawa S, Baramee S, Sermsathanaswadi J, Thianheng P, Tachaapaikoon C, Shikata A, Waeonukul R, Pason P, Ratanakhanokchai K, Kosugi A	Syst Appl Microbiol	10.1016/j.syapm.2018.01.010	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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