Absicoccus porci (KCTC 15747, JCM 32769, KCTC 1574)

Name: Absicoccus porci (KCTC 15747, JCM 32769, KCTC 1574)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164352

Type strain

Strain Designation YH-panp20

Culture col. no. KCTC 15747 JCM 32769 KCTC 1574 YH-panp20

NCBI tax ID(s) 2486576

Special Collections JCM KCTC Literature strains

Links

Absicoccus porci YH-panp20 is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from Pig feces.

Gram-positive coccus-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 285756

KCTC 15747,JCM 32769

@ref 20215

Last LPSN update 2025-12-16 10:09:26

Domain Bacillati

Phylum Bacillota

Class Erysipelotrichia

Order Erysipelotrichales

Family Erysipelotrichaceae

Genus Absicoccus

Species Absicoccus porci

Full scientific name Absicoccus porci Shin et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
125438						90
69552	positive	0.3-0.4 µm	0.2-0.3 µm	coccus-shaped

Colony morphology

69552

Medium usedbrain heart infusion agar with blood

Culture and growth conditions

Culture medium

@ref	Name	Growth
69552	brain heart infusion agar with blood

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic
69552	positive	growth	30-40
69552	positive	optimum	37	mesophilic

Culture pH

@ref	Ability	Type	PH
69552	positive	optimum	6.5
69552	positive	growth	5.5-9

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
69552	anaerobe
125439	microaerophile	95.1

Spore formation

69552

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69552	NaCl	positive	growth	1-2 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69552	57606 ChEBI	5-oxoproline	-	assimilation
69552	16449 ChEBI	alanine	-	assimilation
69552	22599 ChEBI	arabinose	+	fermentation
69552	29016 ChEBI	arginine	-	assimilation
69552	17057 ChEBI	cellobiose	+	fermentation
69552	4853 ChEBI	esculin	-	assimilation
69552	5291 ChEBI	gelatin	+	hydrolysis
69552	17234 ChEBI	glucose	+	fermentation
69552	5390 ChEBI	glutamyl-glutamic acid	-	assimilation
69552	17754 ChEBI	glycerol	+	fermentation
69552	15428 ChEBI	glycine	-	assimilation
69552	16136 ChEBI	hydrogen sulfide	+	hydrolysis
69552	17716 ChEBI	lactose	+	fermentation
69552	25017 ChEBI	leucine	-	assimilation
69552	74534 ChEBI	leucylglycine	-	assimilation
69552	17306 ChEBI	maltose	+	fermentation
69552	29864 ChEBI	mannitol	-	fermentation
69552	37684 ChEBI	mannose	+	fermentation
69552	6731 ChEBI	melezitose	-	fermentation
69552	17632 ChEBI	nitrate	-	reduction
69552	28044 ChEBI	phenylalanine	-	assimilation
69552	26271 ChEBI	proline	-	assimilation
69552	16634 ChEBI	raffinose	+	fermentation
69552	26546 ChEBI	rhamnose	+	fermentation
69552	17814 ChEBI	salicin	-	fermentation
69552	17822 ChEBI	serine	-	assimilation
69552	17992 ChEBI	sucrose	-	fermentation
69552	27082 ChEBI	trehalose	+	fermentation
69552	18186 ChEBI	tyrosine	-	assimilation

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
69552	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
69552	6-phospho-beta-galactosidase	-	3.2.1.85
69552	alkaline phosphatase	-	3.1.3.1
69552	alpha-arabinosidase	-
69552	alpha-fucosidase	-	3.2.1.51
69552	alpha-galactosidase	-	3.2.1.22
69552	alpha-glucosidase	-	3.2.1.20
69552	arginine arylamidase	+
69552	beta-galactosidase	-	3.2.1.23
69552	beta-glucosidase	-	3.2.1.21
69552	beta-glucuronidase	-	3.2.1.31
69552	catalase	-	1.11.1.6
69552	cytochrome oxidase	-	1.9.3.1
69552	glutamate decarboxylase	-	4.1.1.15
69552	histidine arylamidase	+
69552	N-acetyl-beta-glucosaminidase	-	3.2.1.52
69552	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

69552

Fatty acid	Percentage
C18:1 cis9	28.4
C18:1 DAM	16.4
C16:0	12.2
C20:0	8
C18:1 cis9 DAM	7.9
C18:2 Cis9,12	6.8
C18:0	5.6
C16:0 DAM	5.6
C18:0 ALDE	3.6
C17:2@16.760/ C17:1 cis	2.31
C17:0 iso 3OH/ C18:2 DMA	1.4
C14:0	1.2
C16:0 ALDE	1.1
C16:1 cis9	1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Pig feces	Republic of Korea	KOR	Asia
69552	pig faeces	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	YH-panp20 assembly for Absicoccus porci YH-panp20	scaffold	GCA_003725415	2486714.3	2881717282	2486576	72.19

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Absicoccus porci strain YH-PanP20 16S ribosomal RNA gene, partial sequence	MG931004	1477		2486576

GC content

@ref	GC-content (mol%)	Method
67770	38.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Absicoccus porci YH-panp20
NCBI: GCA_003725415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	69.60	no
125439	motility	BacteriaNetⓘ	no	71.10	no
125439	gram_stain	BacteriaNetⓘ	variable	79.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	95.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Absicoccus porci YH-panp20
NCBI: GCA_003725415.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.69	no
125438	anaerobic	anaerobicⓘ	yes	80.32	yes
125438	aerobic	aerobicⓘ	no	97.30	no
125438	spore-forming	spore-formingⓘ	no	72.71	no
125438	thermophilic	thermophileⓘ	no	95.24	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Absicoccus porci gen. nov., sp. nov., a member of the family Erysipelotrichaceae isolated from pig faeces.	Shin Y, Paek J, Kim H, Kook JK, Kim JS, Kim SH, Chang YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003803	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69552	Yeseul Shin, Jayoung Paek, Hongik Kim, Joong-Ki Kook, Joong-Su Kim, Si Hyun Kim and Young-Hyo Chang: Absicoccus porci gen. nov., sp. nov., a member of the family Erysipelotrichaceae isolated from pig faeces. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003803 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Absicoccus porci (KCTC 15747, JCM 32769, KCTC 1574)

Name and taxonomic classification