Pig-Microbiome Dashboard

The Pig-Microbiome project or The Pig intestinal Bacterial Collection (PiBAC) is the most comprehensive, publicly accessible collection of pig gut bacteria available to date. The strains were collected and deposited in connection with the following publication: Wylensek, D., Hitch, T.C.A., Riedel, T. et al. A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nat Commun 11, 6389 (2020). https://doi.org/10.1038/s41467-020-19929-w

Total strains
116
Total species
102
16S sequence accessions
115
BacDive ID Type strain Species Culture col. no. NCBI tax ID(s)
158826 No Acidaminococcus fermentans DSM 105754 905 (species)
159529 No Alistipes shahii DSM 107272 328814 (species)
159670 No Anaerobutyricum soehngenii DSM 109238 105843 (species)
159474 Yes Anaerococcus porci DSM 101005, JCM 34364 2652269 (species)
159581 No Anaerosalibacter bizertensis DSM 106491 932217 (species)
158899 Yes Anaerovibrio slackiae DSM 108025, JCM 34377 2652309 (species)
158835 No Arthrobacter sp. DSM 105845 1667 (species)
159528 No Bacillus altitudinis DSM 108493 293387 (species)
159181 No Bacillus aneurinilyticus DSM 105329 1391 (species)
159565 No Bacillus oryzicola DSM 100955 492670 (species)
158880 No Bacteroides eggerthii DSM 107245 28111 (species)
158881 No Bacteroides fragilis DSM 103087 817 (species)
159486 Yes Baileyella intestinalis DSM 106896, JCM 34418 2606709 (species)
159448 Yes Berryella intestinalis DSM 104960, JCM 34389 1531429 (species)
158888 No Bifidobacterium boum DSM 102857 78343 (species)
159328 No Bifidobacterium sp. DSM 107246 41200 (species)
158889 No Bifidobacterium thermophilum DSM 102827 33905 (species)
159544 No Bifidobacterium tsurumiense DSM 104387 356829 (species)
159487 Yes Bilifractor porci DSM 106898, JCM 34419 2606636 (species)
159029 Yes Bullifex porci DSM 105750, JCM 34393 2606638 (species)
159596 No Cellulosimicrobium sp. DSM 105328 1871614 (species)
159583 No Cloacibacillus porcorum DSM 105753 1197717 (species)
158905 No Clostridium beijerinckii DSM 105335 1520 (species)
158908 No Clostridium cadaveris DSM 100963 1529 (species)
158910 No Clostridium cochlearium DSM 107247 1494 (species)
158912 No Clostridium innocuum DSM 100998 1522 (species)
158915 No Clostridium perfringens DSM 106278 1502 (species)
159188 Yes Clostridium porci DSM 100959, JCM 34385 2605778 (species)
159178 No Clostridium scindens DSM 100975 29347 (species)
158917 No Clostridium sp. DSM 107452 2675590 (species)
158953 No Collinsella aerofaciens DSM 108492 74426 (species)
158954 No Collinsella aerofaciens DSM 108837 74426 (species)
158920 No Corynebacterium ammoniagenes DSM 104746 1697 (species)
158891 No Corynebacterium stationis DSM 107248 1705 (species)
158921 No Corynebacterium xerosis DSM 107249 1725 (species)
159049 Yes Cutibacterium porci DSM 101006, JCM 34386 2605781 (species)
158923 No Desulfovibrio piger DSM 106036 901 (species)
159346 Yes Desulfovibrio porci DSM 105247, JCM 34370 2605782 (species)
158961 No Dorea formicigenerans DSM 105840 39486 (species)
158904 Yes Eisenbergiella porci DSM 101007, JCM 34365 2652274 (species)
159472 No Enterobacter asburiae DSM 105330 61645 (species)
159076 No Enterococcus cecorum DSM 100908 44008 (species)
158931 No Enterococcus faecalis DSM 100906 1351 (species)
158933 No Enterococcus faecium DSM 100905 1352 (species)
158934 No Enterococcus faecium DSM 100907 1352 (species)
158935 No Enterococcus faecium DSM 105332 1352 (species)
158937 No Enterococcus gallinarum DSM 104116 1353 (species)
158938 No Enterococcus hirae DSM 100949 1354 (species)
158947 No Escherichia coli DSM 106279 562 (species)
158958 No Eubacterium callanderi DSM 100997 53442 (species)
159077 No Faecalicoccus pleomorphus DSM 103368 1323 (species)
139938 No Fibrobacter intestinalis DSM 104696 28122 (species)
159489 Yes Floccifex porci DSM 104670, JCM 34421 2606629 (species)
159509 No Fusobacterium mortiferum DSM 108838 850 (species)
159510 No Fusobacterium perfoetens DSM 105865 852 (species)
159435 Yes Hallella mizrahii DSM 108495, JCM 34422 2606637 (species), 59823 (species)
140326 Yes Hallerella porci DSM 104699, JCM 34277 1945871 (species)
139940 Yes Hallerella succinigenes DSM 104698, JCM 34256 1896222 (species)
158892 Yes Holdemanella porci DSM 105256, JCM 34391 2652276 (species)
159457 Yes Hornefia butyriciproducens DSM 104962, JCM 34390 2652293 (species)
159449 Yes Hornefia porci DSM 104948, JCM 34388 2652292 (species)
159202 Yes Inconstantimicrobium porci DSM 108839, JCM 34424 2652291 (species)
159587 No Intestinimonas butyriciproducens DSM 104946 1297617 (species)
159182 No Lacrimispora celerecrescens DSM 105336 29354 (species)
158985 No Lactobacillus amylovorus DSM 107288 1604 (species)
159559 No Lactobacillus equicursoris DSM 104994 420645 (species)
159210 No Lactobacillus johnsonii DSM 106897 33959 (species)
159650 No Lactobacillus porci DSM 105804 2012477 (species)
158984 No Ligilactobacillus agilis DSM 102821 1601 (species)
158988 No Ligilactobacillus ruminis DSM 107447 1623 (species)
158986 No Ligilactobacillus salivarius DSM 105842 1624 (species)
159530 No Ligilactobacillus salivarius DSM 103789 1624 (species)
159409 No Limosilactobacillus mucosae DSM 102820 97478 (species)
158987 No Limosilactobacillus reuteri DSM 108836 1598 (species)
158993 No Megasphaera elsdenii DSM 100961 907 (species)
158994 No Megasphaera elsdenii DSM 106891 907 (species)
159636 No Megasphaera hexanoica DSM 106893 1675036 (species)
158997 No Micrococcus luteus DSM 105846 1270 (species)
159355 Yes Mobiluncus porci DSM 108840, JCM 34379 2652278 (species)
158922 Yes Mogibacterium kristiansenii DSM 106282, JCM 34371 2606708 (species)
159030 Yes Oliverpabstia intestinalis DSM 106162, JCM 34394 2606633 (species)
159042 Yes Olsenella porci DSM 105246, JCM 34369 2652279 (species)
159566 No Olsenella umbonata DSM 105184 604330 (species)
159567 No Olsenella umbonata DSM 105334 604330 (species)
158876 No Parabacteroides distasonis DSM 106899 823 (species)
159195 No Paraclostridium sp. DSM 107287 2023273 (species)
159050 Yes Peptoniphilus porci DSM 104947, JCM 34366 1261639 (species)
158895 Yes Peptostreptococcus porci DSM 106284, JCM 34372 2652282 (species)
158887 No Phocaeicola vulgatus DSM 107446 821 (species)
159031 Yes Porcincola intestinalis DSM 106895, JCM 34417 2606632 (species)
158897 Yes Pseudoramibacter porci DSM 106894, JCM 34374 2606631 (species)
159194 No Psychrobacillus sp. DSM 106035 1871623 (species)
159445 Yes Pyramidobacter porci DSM 105193, JCM 34368 2605789 (species)
159040 No Rhodococcus coprophilus DSM 105337 38310 (species)
159041 No Rhodococcus coprophilus DSM 106145 38310 (species)
159630 Yes Roseburia porci DSM 107448, JCM 34376 2605790 (species)
159622 No Ruthenibacterium lactatiformans DSM 105274 1550024 (species)
159364 No Schaalia hyovaginalis DSM 106277 29316 (species)
159351 Yes Scrofimicrobium canadense DSM 105338, JCM 34392 2652290 (species)
159495 No Segatella copri DSM 108494 165179 (species)
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