Acetobacter okinawensis (NRIC 0658, NBRC 111467, LMG 26457)

Name: Acetobacter okinawensis (NRIC 0658, NBRC 111467, LMG 26457)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163333

Type strain

Culture col. no. NRIC 0658 NBRC 111467 LMG 26457 KACC 19723 JCM 25146

NCBI tax ID(s) 1236501 1076594

Special Collections JCM

History NRIC 0658 <-- P. Lisdiyanti 1-35.

Links

Acetobacter okinawensis JCM 25146 is a bacterium that was isolated from Sugarcane in Okinawa,.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 377579

LMG 26457,JCM 25146

@ref 20215

Last LPSN update 2026-02-09 11:39:35

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Acetobacter

Species Acetobacter okinawensis

Full scientific name Acetobacter okinawensis Iino et al. 2013

BacDive ID	Other strains from **Acetobacter okinawensis** (6)	Type strain
161632	A. okinawensis JCM 15829
163334	A. okinawensis JCM 25147, NRIC 0659
163344	A. okinawensis JCM 25387
163346	A. okinawensis JCM 25390
163348	A. okinawensis JCM 25401
163349	A. okinawensis JCM 25402

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.833
125439	negative	98

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		92.922
125439		97.3

Observation

67770

Observationquinones: Q-9

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent
67770	Sugarcane (stem) (Saccharum offcinarum) in Okinawa,(2004)	Saccharum offcinarum	2004	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB665068 (>99% sequence identity) for Acetobacter from Microbeatlas

Aquatic Samples	428
Soil Samples	352
Animal Samples	2157
Plant Samples	309
Total Samples	3246

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM61386v1 assembly for Acetobacter okinawensis JCM 25146	contig	GCA_000613865	1236501.3	2579778976	1236501	33.84

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Acetobacter okinawensis gene for 16S rRNA, partial sequence	AB665068	1412		1236501
124043	Acetobacter okinawensis DNA, 16S-23S ribosomal RNA intergenic spacer, partial sequence, strain: JCM 25146.	AB936619	619		1236501

GC content

@ref	GC-content (mol%)	Method
67770	59.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acetobacter okinawensis JCM 25146
NCBI: GCA_000613865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	67.50	no
125439	gram_stain	BacteriaNetⓘ	negative	98.00	no
125439	motility	BacteriaNetⓘ	yes	79.60	no
125439	spore_formation	BacteriaNetⓘ	no	97.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acetobacter okinawensis JCM 25146
PATRIC: 1236501.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.83	no
125438	anaerobic	anaerobicⓘ	no	89.82	no
125438	spore-forming	spore-formingⓘ	no	92.92	no
125438	aerobic	aerobicⓘ	yes	76.40	no
125438	thermophilic	thermophileⓘ	no	96.26	yes
125438	flagellated	motile2+ⓘ	yes	64.02	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	A genomic investigation of ecological differentiation between free-living and Drosophila-associated bacteria.	Winans NJ, Walter A, Chouaia B, Chaston JM, Douglas AE, Newell PD.	Mol Ecol	10.1111/mec.14232	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acetobacter okinawensis (NRIC 0658, NBRC 111467, LMG 26457)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000613865

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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