Name: Acetomicrobium mobile NGA
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17777

Type strain:

Species: Acetomicrobium mobile

Strain Designation: NGA

Culture col. no.: DSM 13181, ATCC BAA 54, JCM 12221

Strain history: <- R. J. Menes, Universidad de la República, Montevideo, Uruguay; NGA <- R. J. Menes {1998}

NCBI tax ID(s): 891968 (strain), 97477 (species)

Section

Acetomicrobium mobile NGA is an anaerobe, chemoorganotroph, thermophilic bacterium that forms circular colonies and was isolated from anaerobic wool-scouring wastewater treatment lagoon.

colony-forming
gram-negative
motile
rod-shaped
anaerobe
chemoorganotroph
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Synergistetes
	Class	Synergistia
	Order	Synergistales
	Family	Synergistaceae
	Genus	Acetomicrobium
	Species	Acetomicrobium mobile
	Full Scientific Name (PNU)	Acetomicrobium mobile (Menes and Muxí 2002) Ben Hania et al. 2016

Synonym

Anaerobaculum mobile

Information on morphological and physiological properties Morphology

[Ref.: #43422]	Gram stain	negative
[Ref.: #43422]	Cell length	2-8 µm
[Ref.: #43422]	Cell width	0.5-1 µm
[Ref.: #43422]	Cell shape	rod-shaped
[Ref.: #43422]	Motility	yes
[Ref.: #43422]	Flagellum arrangement	monotrichous, polar

[Ref.: #43698]	Gram stain	negative
[Ref.: #43698]	Cell shape	rod-shaped
[Ref.: #43698]	Motility	no

[Ref.: #43422]	Colony size	1.0-1.5 mm
[Ref.: #43422]	Colony color	white
[Ref.: #43422]	Colony shape	circular
[Ref.: #43422]	Cultivation medium used	BCTC agar

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4960]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b), with strain-specific modifications, anaerobic

[Ref.: #4960]

Culture medium growth

[Ref.: #4960]

Culture medium link

Medium recipe at BacMedia

[Ref.: #4960]

Culture medium composition

expand / minimize

[Ref.: #43422]

Culture medium

BCTC agar

[Ref.: #43422]

Culture medium growth

		Temperature
[Ref.: #4960]	growth	55 °C
[Ref.: #43422]	maximum	55-60 °C
[Ref.: #43422]	growth	35-65 °C
[Ref.: #43698]	growth	35-65 °C
[Ref.: #43698]	optimum	55-60 °C

[Ref.: #4960]	Temperature range	thermophilic
[Ref.: #43422]	Temperature range	thermophilic
[Ref.: #43698]	Temperature range	thermophilic

		pH
[Ref.: #43422]	maximum	6.6-7.3
[Ref.: #43698]	optimum	6.6-7.3
[Ref.: #43422]	growth	5.4-8.7
[Ref.: #43698]	growth	5.4-8.7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4960]	Oxygen tolerance	anaerobe
[Ref.: #43422]	Oxygen tolerance	anaerobe
[Ref.: #43698]	Oxygen tolerance	obligate anaerobe

[Ref.: #43422]	Nutrition type	chemoorganotroph
[Ref.: #43698]	Nutrition type	chemoorganotroph

[Ref.: #43422]	Ability of spore formation	no
[Ref.: #43698]	Ability of spore formation	no

	Salt		Salt conc.
[Ref.: #43422]	NaCl	growth	0-1.5	%
[Ref.: #43422]	NaCl	optimum	0.8	%
[Ref.: #43698]	NaCl	growth	0-15	g/L
[Ref.: #43698]	NaCl	optimum	0.08	g/L

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43422]	2-oxoglutarate ChEBI	-	growth
[Ref.: #43422]	arabinose ChEBI	-	growth
[Ref.: #43422]	beta-d-glucose ChEBI	+	fermentation
[Ref.: #43422]	butyrate ChEBI	-	growth
[Ref.: #43422]	cellobiose ChEBI	-	growth
[Ref.: #43422]	cellulose ChEBI	-	growth
[Ref.: #43422]	cellulose ChEBI	-	degradation
[Ref.: #43422]	citrate ChEBI	-	growth
[Ref.: #43698]	D-fructose ChEBI	+	assimilation
[Ref.: #43698]	D-glucose ChEBI	+	assimilation
[Ref.: #43422]	dextrin ChEBI	-	growth
[Ref.: #43422]	galactose ChEBI	-	growth
[Ref.: #43422]	gelatin ChEBI	-	growth
[Ref.: #43422]	gluconate ChEBI	+	assimilation
[Ref.: #43422]	glutamate ChEBI	-	growth
[Ref.: #43422]	glycerol ChEBI	+	fermentation
[Ref.: #43422]	glycerol ChEBI	+	assimilation
[Ref.: #43698]	glycerol ChEBI	+	assimilation
[Ref.: #43422]	inulin ChEBI	-	growth
[Ref.: #43422]	L-arginine ChEBI	+	assimilation
[Ref.: #43422]	L-leucine ChEBI	+	assimilation
[Ref.: #43422]	L-malate ChEBI	+	assimilation
[Ref.: #43422]	L-phenylalanine ChEBI	+	assimilation
[Ref.: #43698]	L-tartrate ChEBI	+	assimilation
[Ref.: #43422]	lactate ChEBI	-	growth
[Ref.: #43422]	lactose ChEBI	-	growth
[Ref.: #43422]	malate ChEBI	+	fermentation
[Ref.: #43422]	malonate ChEBI	-	growth
[Ref.: #43422]	maltose ChEBI	-	growth
[Ref.: #43698]	maltose ChEBI	-	assimilation
[Ref.: #43422]	mannose ChEBI	-	growth
[Ref.: #43698]	mannose ChEBI	-	assimilation
[Ref.: #43422]	melibiose ChEBI	-	growth
[Ref.: #43422]	myo-inositol ChEBI	-	growth
[Ref.: #43422]	polygalacturonic acid ChEBI	-	growth
[Ref.: #43422]	pyruvate ChEBI	+	fermentation
[Ref.: #43698]	pyruvate ChEBI	+	assimilation
[Ref.: #43422]	raffinose ChEBI	-	growth
[Ref.: #43422]	rhamnose ChEBI	-	growth
[Ref.: #43422]	ribitol ChEBI	-	growth
[Ref.: #43422]	spectinomycin ChEBI	-	growth
[Ref.: #43422]	starch ChEBI	+	assimilation
[Ref.: #43422]	succinate ChEBI	-	growth
[Ref.: #43422]	sucrose ChEBI	-	growth
[Ref.: #43422]	tartrate ChEBI	+	fermentation
[Ref.: #43422]	tryptone	+	assimilation
[Ref.: #43422]	xylan ChEBI	-	growth
[Ref.: #43422]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43422]		acetate ChEBI	yes
[Ref.: #43422]		dihydrogen ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43698]		catalase	-	1.11.1.6
[Ref.: #43698]		cytochrome oxidase	-	1.9.3.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	biotin biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	purine metabolism	73.4	69 of 94
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	71.43	20 of 28
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	lysine metabolism	61.9	26 of 42
[Ref.: #66794]	methanofuran biosynthesis	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	alanine metabolism	58.62	17 of 29
[Ref.: #66794]	tryptophan metabolism	57.89	22 of 38
[Ref.: #66794]	oxidative phosphorylation	56.04	51 of 91
[Ref.: #66794]	vitamin B6 metabolism	54.55	6 of 11
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	methionine metabolism	50	13 of 26
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	non-pathway related	44.74	17 of 38
[Ref.: #66794]	CO2 fixation in Crenarchaeota	44.44	4 of 9
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	degradation of sugar acids	44	11 of 25
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	isoprenoid biosynthesis	42.31	11 of 26
[Ref.: #66794]	methanogenesis from CO2	41.67	5 of 12
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	pentose phosphate pathway	36.36	4 of 11
[Ref.: #66794]	citric acid cycle	35.71	5 of 14
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	allantoin degradation	33.33	3 of 9
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	vitamin B12 metabolism	32.35	11 of 34
[Ref.: #66794]	lipid metabolism	32.26	10 of 31
[Ref.: #66794]	phenol degradation	30	6 of 20
[Ref.: #66794]	degradation of pentoses	28.57	8 of 28
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	ppGpp biosynthesis	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4960]	Sample type/isolated from	anaerobic wool-scouring wastewater treatment lagoon
[Ref.: #4960]	Geographic location (country and/or sea, region)	Trinidad
[Ref.: #4960]	Country	Uruguay
[Ref.: #4960]	Country ISO 3 Code	URY
[Ref.: #4960]	Continent	Middle and South America

[Ref.: #43422]	Sample type/isolated from	wool-scouring wastewater treatment lagoon
[Ref.: #43422]	Geographic location (country and/or sea, region)	Uruguay
[Ref.: #43422]	Country	Uruguay
[Ref.: #43422]	Country ISO 3 Code	URY
[Ref.: #43422]	Continent	Middle and South America
[Ref.: #43422]	Geographic location	-33.5060°/-56.8890°

[Ref.: #43698]	Sample type/isolated from	The sludge of an anaerobic lagoon treating wool-scouring wastewater
[Ref.: #43698]	Geographic location (country and/or sea, region)	Uruguay
[Ref.: #43698]	Country	Uruguay
[Ref.: #43698]	Country ISO 3 Code	URY
[Ref.: #43698]	Continent	Middle and South America

Isolation sources categories

#Engineered	#Waste	#Industrial wastewater
#Condition	#Anoxic (anaerobic)	-
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4960]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Anaerobaculum mobile gene for 16S ribosomal RNA, partial sequence	AB910748	1433	ENA	97477 tax ID	*
[Ref.: #4960]	Anaerobaculum mobile 16S rRNA gene, type strain NGA	AJ243189	1596	ENA	891968 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acetomicrobium mobile DSM 13181	GCA_000266925	complete	GenBank	891968 tax ID	*
[Ref.: #66792]	Anaerobaculum mobile DSM 13181	891968.3	complete	PATRIC	891968 tax ID	*
[Ref.: #66792]	Acetomicrobium mobile DSM 13181	2509601011	complete	JGI IMG/M	891968 tax ID	*

[Ref.: #4960]	GC-content	51.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #43422]	GC-content	51.5 mol%

Availability in culture collections External links

[Ref.: #4960]

Culture collection no.

DSM 13181, ATCC BAA 54, JCM 12221

[Ref.: #20218]

Associated Passport(s) in StrainInfo

278978, 278125, 401027

References

#4960

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13181

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#43422

Konstantinos Mavromatis, Erko Stackebrandt, Brittany Held, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Marcel Huntemann, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Manfred Rohde, Stefan Spring, Markus Göker, Tanja Woyke, John C. Detter, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Hans- Peter Klenk, and Nikos C. Kyrpides: Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA). Stand Genomic Sci 8: 47 - 57 2013 ( DOI 10.4056/sigs.3547050 )

#43698

Wajdi Ben Hania, Amel Bouanane-Darenfed, Jean-Luc Cayol, Bernard Ollivier, Marie-Laure Fardeau: Reclassification of Anaerobaculum mobile, Anaerobaculum thermoterrenum, Anaerobaculum hydrogeniformans as Acetomicrobium mobile comb. nov., Acetomicrobium thermoterrenum comb. nov. and Acetomicrobium hydrogeniformans comb. nov., respectively, and emendation of the genus Acetomicrobium. IJSEM 66: 1506 - 1509 2016 ( DOI 10.1099/ijsem.0.000910 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 )

* These References are textmined

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