Achromobacter xylosoxidans subsp. xylosoxidans (DSM 2402, ATCC 27061, DSM 10346)

Name: Achromobacter xylosoxidans subsp. xylosoxidans (DSM 2402, ATCC 27061, DSM 10346)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 297

Type strain

Strain Designation KM543

Culture col. no. DSM 2402 ATCC 27061 DSM 10346 NRRL 84082 CCUG 56438 15 more

NCBI tax ID(s) 85698

Special Collections DSMZ CCUG JCM CIP

History 1971, E. Yabuuchi, Osaka, Japan: strain KM 543, Achromobacter xylosoxidans <- ATCC; ATCC 27061 <- E. Yabuuchi; KM543 (Alcaligenes xylosoxidans) R. Hugh 2838. CIP <- 1971, E. Yabuuchi, Osaka, Japan: strain KM 543, Achromobacter xylosoxidans

Links

Achromobacter xylosoxidans subsp. xylosoxidans KM543 is an aerobe, Gram-negative, motile bacterium that was isolated from ear discharge.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 389299

LMG 1863,ATCC 27061,CCM 2741,CCUG 12689,NCIB 12033,NCTC 10807,NRRL B-4082,IFO 15126,NRRL 84082,JCM 9659,DSM 10346,NCIMB 12033,IAM12684,CECT 927,CCRC 12839,CECT 467,NBRC 15126,BCRC 12839,KACC 10205,CGMCC 1.2007,VTT E-991282,DSM 2402,CIP 71.32,CCUG 56438

@ref 20215

Last LPSN update 2026-02-09 11:17:50

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter xylosoxidans subsp. xylosoxidans

Full scientific name Achromobacter xylosoxidans subsp. xylosoxidans (Yabuuchi and Yano 1981 ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

Synonyms (1)

Alcaligenes xylosoxidans subsp. xylosoxidans

BacDive ID	Other strains from Achromobacter xylosoxidans subsp. xylosoxidans (8)	Type strain
300	A. xylosoxidans subsp. xylosoxidans DSM 26050, CCUG 48584
301	A. xylosoxidans subsp. xylosoxidans DSM 26051, CCUG 48684
302	A. xylosoxidans subsp. xylosoxidans R-9501, DSM 26088, CCUG 42363
304	A. xylosoxidans subsp. xylosoxidans DSM 26073, CCUG 48386
305	A. xylosoxidans subsp. xylosoxidans DSM 26089, CCUG 45179
306	A. xylosoxidans subsp. xylosoxidans DSM 26101, CCUG 41513
307	A. xylosoxidans subsp. xylosoxidans DSM 26102, CCUG 56600
308	A. xylosoxidans subsp. xylosoxidans DSM 26161, CCUG 48331

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
124002	negative	rod-shaped
125438	negative			97.328

Colony morphology

@ref	Incubation period
1075	1-2 days
124002

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
36489	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
1075	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
124002	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1075	positive	growth	30
36489	positive	growth	30
60956	positive	growth	37
67770	positive	growth	30
124002	positive	growth	15-41
124002	negative	growth	5
124002	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60956	aerobe
124002	obligate aerobe
125438	aerobe	90.946
125439	obligate aerobe	93.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
124002	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
124002	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
124002	606565 ChEBI	hippurate	+	hydrolysis
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
124002	15792 ChEBI	malonate	-	assimilation
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
124002	17632 ChEBI	nitrate	+	builds gas from
124002	17632 ChEBI	nitrate	+	reduction
124002	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68368	17632 ChEBI	nitrate	+	reduction	from API 20E
124002	16301 ChEBI	nitrite	+	builds gas from
124002	16301 ChEBI	nitrite	+	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
124002	35020 ChEBI	tributyrin	-	hydrolysis
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
124002	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
124002	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
124002	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	+			from API 20E
124002	17234 ChEBI	glucose		-
68369	35581 ChEBI	indole			-	from API 20NE
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
124002	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
124002	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
124002	beta-galactosidase	-	3.2.1.23
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
124002	caseinase	-	3.4.21.50
1075	catalase	+	1.11.1.6
124002	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
1075	cytochrome-c oxidase	+	1.9.3.1
124002	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
124002	gamma-glutamyltransferase	-	2.3.2.2
124002	gelatinase	-
68369	gelatinase	-		from API 20NE
68368	gelatinase	-		from API 20E
124002	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
124002	lipase	-
68382	lipase (C 14)	-		from API zym
124002	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
124002	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
124002	oxidase	+
124002	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
124002	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
124002	tween esterase	-
124002	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
1075	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
124002	-	-	+	+	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
1075	+	-	-	-	-	-	-	-	+	-	+/-	-	-	-	+	+	+	+	+	+	+
1075	+	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	+	+	+	+	not determinedn.d.

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
124002	not determinedn.d.	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	+	-	+	+	-	-	+	+	+	+	-	-	-	-	+	+	+	+	+	+	+	+	-	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Organ	#Ear
#Host Body Product	#Fluids	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
1075	ear discharge
60956	Human ear	1969	Osaka	Japan	JPN	Asia
67770	Ear discharge
124002	Ear discharge		Osaka	Japan	JPN	Asia	1969

Taxonmaps

69479

Global distribution of 16S sequence Y14908 (>99% sequence identity) for Achromobacter from Microbeatlas

Aquatic Samples	362
Soil Samples	273
Animal Samples	742
Plant Samples	143
Total Samples	1520

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1075	2	Risk group (German classification) According to TRBA 466
124002	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	NCTC10807 assembly for Achromobacter xylosoxidans NCTC10807	complete	GCA_001457475	85698.28	2667527485	85698	95.31
124043	ASM2287008v1 assembly for Achromobacter xylosoxidans PartM-Axylosoxidans-RM8376	complete	GCA_022870085	85698.459		85698	93.03
124043	ASM1334313v1 assembly for Achromobacter xylosoxidans FDAARGOS_789	complete	GCA_013343135	85698.244		85698	92.92
66792	ASM50828v1 assembly for Achromobacter xylosoxidans NBRC 15126 = ATCC 27061	complete	GCA_000508285	1216976.3	2558309085	1216976	74.72
67770	ASM159859v1 assembly for Achromobacter xylosoxidans NBRC 15126 = ATCC 27061	contig	GCA_001598595	1216976.8	2731957707	1216976	62.82

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
1075	Achromobacter xylosoxidans 16S rRNA gene, type strain DSM 10346	Y14908	1495	85698
67770	Achromobacter xylosoxidans gene for 16S ribosomal RNA	D88005	1462	85698
124043	Achromobacter xylosoxidans gene for 16S rRNA, partial sequence, strain: NBRC 15126.	AB680773	1456	85698
124043	Achromobacter xylosoxidans strain CIP 71.32 16S ribosomal RNA gene, partial sequence.	DQ235080	446	85698
124043	Achromobacter xylosoxidans partial 16S rRNA gene, type strain CCM2741T	FM999735	1387	85698
124043	Achromobacter xylosoxidans strain LMG 1863 16S ribosomal RNA gene, partial sequence.	JQ746428	1309	85698
124043	Achromobacter xylosoxidans strain NBRC 15126(T) 16S ribosomal RNA gene, partial sequence.	MH661211	1404	85698

GC content

@ref	GC-content (mol%)	Method
1075	69.2
67770	57.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
NCBI: GCA_000508285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.50	no
125439	gram_stain	BacteriaNetⓘ	negative	85.70	no
125439	motility	BacteriaNetⓘ	yes	77.00	no
125439	spore_formation	BacteriaNetⓘ	no	87.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter xylosoxidans NCTC10807
NCBI: GCA_001457475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.33	no
125438	anaerobic	anaerobicⓘ	no	97.89	yes
125438	aerobic	aerobicⓘ	yes	90.95	yes
125438	spore-forming	spore-formingⓘ	no	87.13	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	84.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Myxinidin-Derived Peptide against Biofilms Caused by Cystic Fibrosis Emerging Pathogens.	Bellavita R, Maione A, Braccia S, Sinoca M, Galdiero S, Galdiero E, Falanga A.	Int J Mol Sci	10.3390/ijms24043092	2023
Pathogenicity	Isolation and characterization of numerous novel phages targeting diverse strains of the ubiquitous and opportunistic pathogen Achromobacter xylosoxidans.	Wittmann J, Dreiseikelmann B, Rohde C, Rohde M, Sikorski J.	PLoS One	10.1371/journal.pone.0086935	2014
Phenotype	Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes.	Jakobsen TH, Hansen MA, Jensen PO, Hansen L, Riber L, Cockburn A, Kolpen M, Ronne Hansen C, Ridderberg W, Eickhardt S, Hansen M, Kerpedjiev P, Alhede M, Qvortrup K, Burmolle M, Moser C, Kuhl M, Ciofu O, Givskov M, Sorensen SJ, Hoiby N, Bjarnsholt T.	PLoS One	10.1371/journal.pone.0068484	2013
Phylogeny	Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16S rRNA gene sequencing for species identification of nonfermenting bacteria.	Mellmann A, Cloud J, Maier T, Keckevoet U, Ramminger I, Iwen P, Dunn J, Hall G, Wilson D, Lasala P, Kostrzewa M, Harmsen D.	J Clin Microbiol	10.1128/jcm.00157-08	2008
	Biocidal Efficacies of Contact Lens Disinfecting Solutions Against Gram-Negative Organisms Associated with Lens Case-Associated Corneal Infiltrative Events.	Corwin-Buell J, Callahan D, McGrath D, Millard K, Mosehauer G, Rah MJ, Phatak N.	Clin Ophthalmol	10.2147/opth.s477777	2025
	The Efficacy of an N-Acetylcysteine-Antibiotic Combination Therapy on Achromobacter xylosoxidans in a Cystic Fibrosis Sputum/Lung Cell Model.	Aiyer A, Das T, Whiteley GS, Glasbey T, Kriel FH, Farrell J, Manos J.	Biomedicines	10.3390/biomedicines10112886	2022
	Role of Efflux in Antibiotic Resistance of Achromobacter xylosoxidans and Achromobacter insuavis Isolates From Patients With Cystic Fibrosis.	Chalhoub H, Kampmeier S, Kahl BC, Van Bambeke F.	Front Microbiol	10.3389/fmicb.2022.762307	2022
	Characterization of the Achromobacter xylosoxidans Type VI Secretion System and Its Implication in Cystic Fibrosis.	Le Goff M, Vastel M, Lebrun R, Mansuelle P, Diarra A, Grandjean T, Triponney P, Imbert G, Gosset P, Dessein R, Garnier F, Durand E.	Front Cell Infect Microbiol	10.3389/fcimb.2022.859181	2022
	Polymyxin Resistance and Heteroresistance Are Common in Clinical Isolates of Achromobacter Species and Correlate with Modifications of the Lipid A Moiety of Lipopolysaccharide.	MacDonald L, Keenan S, Di Lorenzo F, Adade NE, Kenna DTD, Millar BC, Moore JE, Ramos Vivas J, Molinaro A, Valvano MA.	Microbiol Spectr	10.1128/spectrum.03729-22	2023
	Poorly processed reusable surface disinfection tissue dispensers may be a source of infection.	Kampf G, Degenhardt S, Lackner S, Jesse K, von Baum H, Ostermeyer C.	BMC Infect Dis	10.1186/1471-2334-14-37	2014
	SSNOMBACTER: A collection of scattering-type scanning near-field optical microscopy and atomic force microscopy images of bacterial cells.	Lucidi M, Tranca DE, Nichele L, Unay D, Stanciu GA, Visca P, Holban AM, Hristu R, Cincotti G, Stanciu SG.	Gigascience	10.1093/gigascience/giaa129	2020
	13-(2-Methylbenzyl) Berberine Is a More Potent Inhibitor of MexXY-Dependent Aminoglycoside Resistance than Berberine.	Kotani K, Matsumura M, Morita Y, Tomida J, Kutsuna R, Nishino K, Yasuike S, Kawamura Y.	Antibiotics (Basel)	10.3390/antibiotics8040212	2019
Metabolism	Proteomic identification of Axc, a novel beta-lactamase with carbapenemase activity in a meropenem-resistant clinical isolate of Achromobacter xylosoxidans.	Fleurbaaij F, Henneman AA, Corver J, Knetsch CW, Knetsch CW, Smits WK, Nauta ST, Giera M, Dragan I, Kumar N, Lawley TD, Verhoeven A, van Leeuwen HC, Kuijper EJ, Hensbergen PJ.	Sci Rep	10.1038/s41598-018-26079-z	2018
Pathogenicity	Biocidal efficacy of multipurpose solutions against Gram-negative organisms associated with corneal infiltrative events.	Callahan D, Kovacs C, Lynch S, Rah M.	Clin Exp Optom	10.1111/cxo.12509	2017
	Role of RND Efflux Pumps in Drug Resistance of Cystic Fibrosis Pathogens.	Scoffone VC, Trespidi G, Barbieri G, Irudal S, Perrin E, Buroni S.	Antibiotics (Basel)	10.3390/antibiotics10070863	2021
Pathogenicity	Efficacy of surface disinfectant cleaners against emerging highly resistant gram-negative bacteria.	Reichel M, Schlicht A, Ostermeyer C, Kampf G.	BMC Infect Dis	10.1186/1471-2334-14-292	2014
	Derivatives (halogen, nitro and amino) of 8-hydroxyquinoline with highly potent antimicrobial and antioxidant activities.	Cherdtrakulkiat R, Boonpangrak S, Sinthupoom N, Prachayasittikul S, Ruchirawat S, Prachayasittikul V.	Biochem Biophys Rep	10.1016/j.bbrep.2016.03.014	2016
Phylogeny	Fluorescence in situ hybridization for rapid identification of Achromobacter xylosoxidans and Alcaligenes faecalis recovered from cystic fibrosis patients.	Wellinghausen N, Wirths B, Poppert S.	J Clin Microbiol	10.1128/jcm.00508-06	2006
Enzymology	Achromobacter xylosoxidans respiratory tract infection in cystic fibrosis patients.	Lambiase A, Catania MR, Del Pezzo M, Rossano F, Terlizzi V, Sepe A, Raia V.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-011-1182-5	2011
	Antibiotics Drive Expansion of Rare Pathogens in a Chronic Infection Microbiome Model.	Varga JJ, Zhao CY, Davis JD, Hao Y, Farrell JM, Gurney JR, Voit E, Brown SP.	mSphere	10.1128/msphere.00318-22	2022
Enzymology	Bacterial Interference With Lactate Dehydrogenase Assay Leads to an Underestimation of Cytotoxicity.	Van den Bossche S, Vandeplassche E, Ostyn L, Coenye T, Crabbe A.	Front Cell Infect Microbiol	10.3389/fcimb.2020.00494	2020
Phylogeny	OXA-258 from Achromobacter ruhlandii: a species-specific marker.	Papalia M, Almuzara M, Cejas D, Traglia G, Ramirez MS, Galanternik L, Vay C, Gutkind G, Radice M.	J Clin Microbiol	10.1128/jcm.03043-12	2013
	A stability study of amphotericin B, colistin and tobramycin in a hydrophilic suspension commonly used for selective decontamination of the digestive tract by HPLC and in vitro potency measurements.	Pfeifer C, Noll S, Gerecke H, Fassauer G, Jira T, Remane Y, Vogel J, Frontini R, Reinhardt R.	Eur J Hosp Pharm	10.1136/ejhpharm-2016-000931	2017
	The Identification and Differentiation between Burkholderia mallei and Burkholderia pseudomallei Using One Gene Pyrosequencing.	Gilling DH, Luna VA, Pflugradt C.	Int Sch Res Notices	10.1155/2014/109583	2014
Pathogenicity	In vitro susceptibility of Alcaligenes denitrificans subsp. xylosoxidans to 24 antimicrobial agents.	Glupczynski Y, Hansen W, Freney J, Yourassowsky E.	Antimicrob Agents Chemother	10.1128/aac.32.2.276	1988
	Diversity of plasmids in Achromobacter xylosoxidans isolates responsible for a seemingly common-source nosocomial outbreak.	Arroyo JC, Jordan W, Lema MW, Brown A.	J Clin Microbiol	10.1128/jcm.25.10.1952-1955.1987	1987
Metabolism	Identification of a carbenicillin-hydrolyzing beta-lactamase in Alcaligenes denitrificans subsp. xylosoxydans.	Decre D, Arlet G, Bergogne-Berezin E, Philippon A.	Antimicrob Agents Chemother	10.1128/aac.39.3.771	1995
Enzymology	Cerebral ventriculitis associated with Achromobacter xylosoxidans.	Shigeta S, Yasunaga Y, Honzumi K, Okamura H, Kumata R, Endo S.	J Clin Pathol	10.1136/jcp.31.2.156	1978
Phylogeny	Serological classification of Achromobacter xylosoxidans.	Shigeta S, Hyodo S, Chonan E, Yabuuchi E.	J Clin Microbiol	10.1128/jcm.17.2.181-186.1983	1983
Phylogeny	Identification of Achromobacter species by cellular fatty acids and by production of keto acids.	Dees SB, Moss CW.	J Clin Microbiol	10.1128/jcm.8.1.61-66.1978	1978
	Conjugative Type 4 secretion system of a novel large plasmid from the chemoautotroph Tetrathiobacter kashmirensis and construction of shuttle vectors for Alcaligenaceae.	Dam B, Ghosh W, Das Gupta SK.	Appl Environ Microbiol	10.1128/aem.02521-08	2009
	Differential Impacts of Willow and Mineral Fertilizer on Bacterial Communities and Biodegradation in Diesel Fuel Oil-Contaminated Soil.	Leewis MC, Uhlik O, Fraraccio S, McFarlin K, Kottara A, Glover C, Macek T, Leigh MB.	Front Microbiol	10.3389/fmicb.2016.00837	2016
	Revealing bioremediation potential of novel indigenous bacteria from oil-contaminated sites in the UAE: A combined bioinformatics and experimental validation	Alkhatib S, Arya S, Islayem D, Nyadzayo R, Mohamed S, Yousef A, Hernandez H, Pappa A.	PLoS One		2025
	Draft Genome Sequence of an Unusually Multidrug-Resistant Strain of Achromobacter xylosoxidans from a Blood Isolate.	Choi H, Jinadatha C, Chatterjee P, Allton Y, Navarathna DH.	Microbiol Resour Announc	10.1128/mra.00194-20	2020
Phylogeny	Duplex real-time PCR assay for the simultaneous detection of Achromobacter xylosoxidans and Achromobacter spp.	Price EP, Soler Arango V, Kidd TJ, Fraser TA, Nguyen TK, Bell SC, Sarovich DS.	Microb Genom	10.1099/mgen.0.000406	2020
Enzymology	Neonatal meningitis caused by Achromobacter xylosoxidans.	Namnyak SS, Holmes B, Fathalla SE.	J Clin Microbiol	10.1128/jcm.22.3.470-471.1985	1985
Phylogeny	Strains of Achromobacter xylosoxidans from clinical material.	Holmes B, Snell JJ, Lapage SP.	J Clin Pathol	10.1136/jcp.30.7.595	1977
Phylogeny	Identification of Gram-negative non-fermenters and oxidase-positive fermenters by the Oxi/Ferm tube.	Holmes B, Dowling J, Lapage SP.	J Clin Pathol	10.1136/jcp.32.1.78	1979
	Complete genome sequence of an Achromobacter xylosoxidans strain H1_3_1 isolated from a hybrid biological-inorganic system reactor.	Feng X, Kazama D, Sato K, Kobayashi H.	Microbiol Resour Announc	10.1128/mra.00612-23	2023
	Enrichment of halotolerant hydrogen-oxidizing bacteria and production of high-value-added chemical hydroxyectoine using a hybrid biological-inorganic system.	Feng X, Kazama D, He S, Nakayama H, Hayashi T, Tokunaga T, Sato K, Kobayashi H.	Front Microbiol	10.3389/fmicb.2023.1254451	2023
Metabolism	Leukotriene B₄ is essential for lung host defence and alpha-defensin-1 production during Achromobacter xylosoxidans infection.	Prado MKB, Locachevic GA, Zoccal KF, Paula-Silva FWG, Fontanari C, Ferreira JC, Pereira PAT, Gardinassi LG, Ramos SG, Sorgi CA, Darini ALC, Faccioli LH.	Sci Rep	10.1038/s41598-017-17993-9	2017
Enzymology	A practical molecular identification of nonfermenting Gram-negative bacteria from cystic fibrosis.	Capizzani CPDC, Cacador NC, Marques EA, Levy CE, Tonani L, Torres LAGMM, Darini ALDC.	Braz J Microbiol	10.1016/j.bjm.2017.07.002	2018
Phylogeny	Multilocus sequence analysis of isolates of Achromobacter from patients with cystic fibrosis reveals infecting species other than Achromobacter xylosoxidans.	Ridderberg W, Wang M, Norskov-Lauritsen N.	J Clin Microbiol	10.1128/jcm.00728-12	2012
Enzymology	Low rates of Pseudomonas aeruginosa misidentification in isolates from cystic fibrosis patients.	Kidd TJ, Ramsay KA, Hu H, Bye PT, Elkins MR, Grimwood K, Harbour C, Marks GB, Nissen MD, Robinson PJ, Rose BR, Sloots TP, Wainwright CE, Bell SC, ACPinCF Investigators.	J Clin Microbiol	10.1128/jcm.00014-09	2009
	Achromobacter Species Isolated from Cystic Fibrosis Patients Reveal Distinctly Different Biofilm Morphotypes.	Nielsen SM, Norskov-Lauritsen N, Bjarnsholt T, Meyer RL.	Microorganisms	10.3390/microorganisms4030033	2016
	Control of a pyrimidine ribonucleotide salvage pathway in Pseudomonas oleovorans.	Gill R, West TP.	Arch Microbiol	10.1007/s00203-022-03016-3	2022
Pathogenicity	Inhibition of Aflatoxin Production in Aspergillus flavus by a Klebsiella sp. and Its Metabolite Cyclo(l-Ala-Gly).	Sakuda S, Sunaoka M, Terada M, Sakoda A, Ishijima N, Hakoshima N, Uchida K, Enomoto H, Furukawa T.	Toxins (Basel)	10.3390/toxins16030141	2024
Genetics	Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface.	Goff JL, Szink EG, Durrence KL, Lui LM, Nielsen TN, Kuehl JV, Hunt KA, Chandonia JM, Huang J, Thorgersen MP, Poole FL, Stahl DA, Chakraborty R, Deutschbauer AM, Arkin AP, Adams MWW.	Environ Microbiome	10.1186/s40793-024-00570-9	2024
	Polyhydroxyalkanoate Production by Caenibius tardaugens from Steroidal Endocrine Disruptors.	Ibero J, Rivero-Buceta V, Garcia JL, Galan B.	Microorganisms	10.3390/microorganisms10040706	2022
Phylogeny	The human respiratory tract microbial community structures in healthy and cystic fibrosis infants.	Pust MM, Wiehlmann L, Davenport C, Rudolf I, Dittrich AM, Tummler B.	NPJ Biofilms Microbiomes	10.1038/s41522-020-00171-7	2020
	Biodegradation of Unpretreated Low-Density Polyethylene (LDPE) by Stenotrophomonas sp. and Achromobacter sp., Isolated From Waste Dumpsite and Drilling Fluid.	Dey AS, Bose H, Mohapatra B, Sar P.	Front Microbiol	10.3389/fmicb.2020.603210	2020
Metabolism	Metabolic Modeling of Cystic Fibrosis Airway Communities Predicts Mechanisms of Pathogen Dominance.	Henson MA, Orazi G, Phalak P, O'Toole GA.	mSystems	10.1128/msystems.00026-19	2019
Pathogenicity	Resistome diversity in cattle and the environment decreases during beef production.	Noyes NR, Yang X, Linke LM, Magnuson RJ, Dettenwanger A, Cook S, Geornaras I, Woerner DE, Gow SP, McAllister TA, Yang H, Ruiz J, Jones KL, Boucher CA, Morley PS, Belk KE.	Elife	10.7554/elife.13195	2016
Phylogeny	Sulfur oxidation by Achromobacter xylosoxidans strain wsp05 reveals ecological widening over which thiotrophs are distributed.	Jadhav K, Jadhav I	World J Microbiol Biotechnol	10.1007/s11274-017-2359-6	2017
Pathogenicity	Genomic insights into intrinsic and acquired drug resistance mechanisms in Achromobacter xylosoxidans.	Hu Y, Zhu Y, Ma Y, Liu F, Lu N, Yang X, Luan C, Yi Y, Zhu B	Antimicrob Agents Chemother	10.1128/AAC.04260-14	2014
Enzymology	Cytoplasmic expression of the Achromobacter xylosoxidans blue copper nitrite reductase in Escherichia coli and characterisation of the recombinant protein.	Ho WH, Ooi BL, Jorgensen AM, Borg L, Jespersen LL, Christensen HE	Protein Expr Purif	10.1016/j.pep.2003.08.010	2003
Phylogeny	Emendation of genus Achromobacter and Achromobacter xylosoxidans (Yabuuchi and Yano) and proposal of Achromobacter ruhlandii (Packer and Vishniac) comb. nov., Achromobacter piechaudii (Kiredjian et al.) comb. nov., and Achromobacter xylosoxidans subsp. denitrificans (Ruger and Tan) comb. nov.	Yabuuchi E, Kawamura Y, Kosako Y, Ezaki T	Microbiol Immunol	10.1111/j.1348-0421.1998.tb02306.x	1998
Pathogenicity	Nosocomial colonization and infection by Achromobacter xylosoxidans.	Reverdy ME, Freney J, Fleurette J, Coulet M, Surgot M, Marmet D, Ploton C	J Clin Microbiol	10.1128/jcm.19.2.140-143.1984	1984
Phylogeny	Flavobacterium kingsejongi sp. nov., a carotenoid-producing species isolated from Antarctic penguin faeces.	Choi JY, Kim JH, Lee PC.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002610	2018
Phylogeny	Pseudomonas oleovorans subsp. lubricantis subsp. nov., and reclassification of Pseudomonas pseudoalcaligenes ATCC 17440T as later synonym of Pseudomonas oleovorans ATCC 8062 T.	Saha R, Sproer C, Beck B, Bagley S.	Curr Microbiol	10.1007/s00284-009-9540-6	2010
Phylogeny	Achromobacter aestuarii sp. nov., Isolated from an Estuary.	Kim SC, Chung SO, Lee HJ	Curr Microbiol	10.1007/s00284-020-02231-9	2020
Phylogeny	Achromobacter aloeverae sp. nov., isolated from the root of Aloe vera (L.) Burm.f.	Kuncharoen N, Muramatsu Y, Shibata C, Kamakura Y, Nakagawa Y, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001566	2017
Phylogeny	Parapusillimonas granuli gen. nov., sp. nov., isolated from granules from a wastewater-treatment bioreactor.	Kim YJ, Kim MK, Im WT, Srinivasan S, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.009720-0	2009

References

#1075	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2402
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36489	; Curators of the CIP;
#60956	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56438
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124002	Collection of Institut Pasteur ; Curators of the CIP; CIP 71.32
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter xylosoxidans subsp. xylosoxidans (DSM 2402, ATCC 27061, DSM 10346)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Antibiotic resistance

Metabolite production

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API 20E

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API 20NE

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Genome browser: GCA_001457475

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