Name: Achromobacter xylosoxidans subsp. xylosoxidans KM543
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 297

Type strain:

Species: Achromobacter xylosoxidans subsp. xylosoxidans

Strain Designation: KM543

Culture col. no.: DSM 2402, ATCC 27061, DSM 10346, NRRL 84082, CCUG 56438, CIP 71.32, NCTC 10807, LMG 1863, CCM 2741, IFO 15126, NCIMB 12033, JCM 9659, CCUG 12689, CECT 467, CECT 927, IAM 12684, NBRC 15126, NRRL B-4082, NCIB 12033

Strain history: CIP <- 1971, E. Yabuuchi, Osaka, Japan: strain KM 543, Achromobacter xylosoxidans

NCBI tax ID(s): 85698 (species)

SI-ID 389299

LMG 1863, ATCC 27061, CCM 2741, CCUG 12689, NCIB 12033, NCTC 10807, NRRL B-4082, IFO 15126, NRRL 84082, JCM 9659, DSM 10346, NCIMB 12033, IAM12684, CECT 927, CCRC 12839, CECT 467, NBRC 15126, BCRC 12839, KACC 10205, CGMCC 1.2007, VTT E-991282, DSM 2402, CIP 71.32, CCUG 56438

Special Collections

Other strains from Achromobacter xylosoxidans subsp. xylosoxidans

Section

When using BacDive for research please cite our paper

Achromobacter xylosoxidans subsp. xylosoxidans KM543 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from ear discharge.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Achromobacter*
	Species	Achromobacter xylosoxidans subsp. xylosoxidans
	Full Scientific Name (LPSN)	Achromobacter xylosoxidans subsp. xylosoxidans (Yabuuchi and Yano 1981 ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

Synonym

Alcaligenes xylosoxidans subsp. xylosoxidans

Information on morphological and physiological properties Morphology

[Ref.: #124002]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97.328

[Ref.: #124002]	Cell shape	rod-shaped

[Ref.: #124002]	Motility	yes

[Ref.: #1075]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36489]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #36489]

Culture medium growth

[Ref.: #36489]

Culture medium composition

expand / minimize

[Ref.: #1075]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1075]

Culture medium growth

[Ref.: #1075]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1075]

Culture medium composition

expand / minimize

[Ref.: #124002]

Culture medium

CIP Medium 3

[Ref.: #124002]

Culture medium growth

[Ref.: #124002]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1075]		growth	30 °C
[Ref.: #36489]		growth	30 °C
[Ref.: #60956]		growth	37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #124002]		growth	15-41 °C
[Ref.: #124002]	negative	growth	5 °C
[Ref.: #124002]	negative	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60956]	Oxygen tolerance	aerobe
[Ref.: #124002]	Oxygen tolerance	obligate aerobe
[Ref.: #125438]	Oxygen tolerance	aerobe Confidence in %90.946
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %93.5

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE, API 20E
[Ref.: #124002]	citrate ChEBI	+	carbon source
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE, API 20E
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #124002]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE, API 20E
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #124002]	hippurate ChEBI	+	hydrolysis
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #124002]	malonate ChEBI	-	assimilation
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #124002]	nitrate ChEBI	+	builds gas from
[Ref.: #124002]	nitrate ChEBI	+	reduction
[Ref.: #124002]	nitrate ChEBI	+	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE, API 20E
[Ref.: #124002]	nitrite ChEBI	+	builds gas from
[Ref.: #124002]	nitrite ChEBI	+	reduction
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #124002]	tributyrin ChEBI	-	hydrolysis
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE, API 20E
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API 20E
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #124002]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #124002]	indole ChEBI	no
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68369]	indole ChEBI	no	* from API 20NE, API 20E
[Ref.: #68368]	nitrite ChEBI	yes	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #124002]	acetoin ChEBI	-
[Ref.: #124002]	glucose ChEBI		-
[Ref.: #68368]	acetoin ChEBI	+			* from API 20E
[Ref.: #68369]	indole ChEBI			-	* from API 20NE, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #124002]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #124002]	amylase	-
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE, API 20E
[Ref.: #124002]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #124002]	caseinase	-	3.4.21.50
[Ref.: #1075]	catalase	+	1.11.1.6
[Ref.: #124002]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #1075]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #124002]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #124002]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #124002]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE, API 20E
[Ref.: #124002]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #124002]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #124002]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #124002]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #124002]	oxidase	+
[Ref.: #124002]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #124002]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #124002]	tween esterase	-
[Ref.: #124002]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE, API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #1075]	18519	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #1075]	27281	+	-	-	-	-	-	-	-	+	-	+/-	-	-	-	+	+	+	+	+	+	+
[Ref.: #1075]	26247	+	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	+	+	+	+	not determinedn.d.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #124002]	3310	not determinedn.d.	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	+	-	+	+	-	-	+	+	+	+	-	-	-	-	+	+	+	+	+	+	+	+	-	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #124002]	13234	-	-	+	+	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1075]	Sample type/isolated from	ear discharge

[Ref.: #60956]	Sample type/isolated from	Human ear
[Ref.: #60956]	Sampling date	1969
[Ref.: #60956]	Geographic location (country and/or sea, region)	Osaka
[Ref.: #60956]	Country	Japan
[Ref.: #60956]	Country ISO 3 Code	JPN
[Ref.: #60956]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Ear discharge

[Ref.: #124002]	Sample type/isolated from	Ear discharge
[Ref.: #124002]	Geographic location (country and/or sea, region)	Osaka
[Ref.: #124002]	Country	Japan
[Ref.: #124002]	Country ISO 3 Code	JPN
[Ref.: #124002]	Continent	Asia
[Ref.: #124002]	Isolation date	1969
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Organ	#Ear
#Host Body Product	#Fluids	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y14908 (>99% sequence identity) for Achromobacter from Microbeatlas

Aquatic Samples	362
Soil Samples	273
Animal Samples	742
Plant Samples	143
Total Samples	1520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1075]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #124002]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1075]	Achromobacter xylosoxidans 16S rRNA gene, type strain DSM 10346	Y14908	1495	GenBank ENA	85698 tax ID
[Ref.: #67770]	Achromobacter xylosoxidans gene for 16S ribosomal RNA	D88005	1462	GenBank ENA	85698 tax ID
[Ref.: #124043]	Achromobacter xylosoxidans strain LMG 1863 16S ribosomal RNA gene, partial sequence.	JQ746428	1309	GenBank ENA	85698 tax ID	*
[Ref.: #124043]	Achromobacter xylosoxidans strain CIP 71.32 16S ribosomal RNA gene, partial sequence.	DQ235080	446	GenBank ENA	85698 tax ID	*
[Ref.: #124043]	Achromobacter xylosoxidans gene for 16S rRNA, partial sequence, strain: NBRC 15126.	AB680773	1456	GenBank ENA	85698 tax ID	*
[Ref.: #124043]	Achromobacter xylosoxidans partial 16S rRNA gene, type strain CCM2741T	FM999735	1387	GenBank ENA	85698 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Achromobacter xylosoxidans NBRC 15126 = ATCC 27061	GCA_001598595	contig	GenBank ENA	1216976 tax ID
[Ref.: #67770]	Achromobacter xylosoxidans genome assembly NCTC10807, chromosome : 1	LN831029		GenBank ENA	85698 tax ID
[Ref.: #66792]	Achromobacter xylosoxidans NBRC 15126 = ATCC 27061	1216976.8	wgs	PATRIC	1216976 tax ID	*
[Ref.: #66792]	Achromobacter xylosoxidans NBRC 15126 = ATCC 27061	1216976.3	complete	PATRIC	1216976 tax ID	*
[Ref.: #66792]	Achromobacter xylosoxidans strain FDAARGOS_789	85698.244	complete	PATRIC	85698 tax ID	*
[Ref.: #66792]	Achromobacter xylosoxidans strain NCTC10807	85698.28	complete	PATRIC	85698 tax ID	*

[Ref.: #1075]	GC-content	69.2 mol%
[Ref.: #67770]	GC-content	57.6 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter xylosoxidans NCTC10807 NCBI: GCA_001457475.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.328	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.886	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	90.946	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	87.127	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	84.1	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 NCBI: GCA_000508285
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	93.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	85.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	77
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	87

Availability in culture collections External links

[Ref.: #1075]

Culture collection no.

DSM 2402, ATCC 27061, DSM 10346, NRRL 84082, CCUG 56438, CIP 71.32, NCTC 10807, LMG 1863, CCM 2741, IFO 15126, NCIMB 12033, JCM 9659, CCUG 12689, CECT 467, CECT 927, IAM 12684, NBRC 15126, NRRL B-4082, NCIB 12033

[Ref.: #69979]

SI-ID 389299

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Achromobacter aestuarii sp. nov., Isolated from an Estuary.	Kim SC, Chung SO, Lee HJ	Curr Microbiol	10.1007/s00284-020-02231-9	2020	*
Phylogeny	Sulfur oxidation by Achromobacter xylosoxidans strain wsp05 reveals ecological widening over which thiotrophs are distributed.	Jadhav K, Jadhav I	World J Microbiol Biotechnol	10.1007/s11274-017-2359-6	2017	*
Phylogeny	Achromobacter aloeverae sp. nov., isolated from the root of Aloe vera (L.) Burm.f.	Kuncharoen N, Muramatsu Y, Shibata C, Kamakura Y, Nakagawa Y, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001566	2017	*
Pathogenicity	Genomic insights into intrinsic and acquired drug resistance mechanisms in Achromobacter xylosoxidans.	Hu Y, Zhu Y, Ma Y, Liu F, Lu N, Yang X, Luan C, Yi Y, Zhu B	Antimicrob Agents Chemother	10.1128/AAC.04260-14	2014	*
Phylogeny	Parapusillimonas granuli gen. nov., sp. nov., isolated from granules from a wastewater-treatment bioreactor.	Kim YJ, Kim MK, Im WT, Srinivasan S, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.009720-0	2009	*
Enzymology	Cytoplasmic expression of the Achromobacter xylosoxidans blue copper nitrite reductase in Escherichia coli and characterisation of the recombinant protein.	Ho WH, Ooi BL, Jorgensen AM, Borg L, Jespersen LL, Christensen HE	Protein Expr Purif	10.1016/j.pep.2003.08.010	2003	*
Phylogeny	Emendation of genus Achromobacter and Achromobacter xylosoxidans (Yabuuchi and Yano) and proposal of Achromobacter ruhlandii (Packer and Vishniac) comb. nov., Achromobacter piechaudii (Kiredjian et al.) comb. nov., and Achromobacter xylosoxidans subsp. denitrificans (Ruger and Tan) comb. nov.	Yabuuchi E, Kawamura Y, Kosako Y, Ezaki T	Microbiol Immunol	10.1111/j.1348-0421.1998.tb02306.x	1998	*
Pathogenicity	Nosocomial colonization and infection by Achromobacter xylosoxidans.	Reverdy ME, Freney J, Fleurette J, Coulet M, Surgot M, Marmet D, Ploton C	J Clin Microbiol	10.1128/jcm.19.2.140-143.1984	1984	*

References

#1075

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2402

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36489 ; Curators of the CIP;
#60956 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56438

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69979

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389299.1 )

#124002 Collection of Institut Pasteur ; Curators of the CIP; CIP 71.32

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Search for species Achromobacter xylosoxidans subsp. xylosoxidans in external resources:
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Achromobacter xylosoxidans NCTC10807

Achromobacter xylosoxidans NBRC 15126 = ATCC 27061

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