Name: Pseudomonas putida JCM 20004
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162685

Type strain:

Species: Pseudomonas putida

Culture col. no.: JCM 20004, IAM 1002

Strain history: IAM 1002 <-- K. Arima et al. S-5.

NCBI tax ID(s): 303 (species)

SI-ID 206284

BCRC 10946, CCRC 10946, IAM 1002, JCM 20004

Special Collections

Other strains from Pseudomonas putida

Section

Pseudomonas putida JCM 20004 is a bacterium of the family Pseudomonadaceae.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas putida**
	Full Scientific Name (LPSN)	Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)

	Synonym	"Bacillus* putidus"*
	Synonym	Arthrobacter siderocapsulatus

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence LC571911 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	543
Soil Samples	368
Animal Samples	799
Plant Samples	423
Total Samples	2133

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas putida JCM 20004 gene for 16S rRNA, partial sequence	LC571911	1459	GenBank ENA	303 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20004, IAM 1002

[Ref.: #113517]

SI-ID 206284

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	ISC-like [2Fe-2S] ferredoxin (FdxB) dimer from Pseudomonas putida JCM 20004: structural and electron-nuclear double resonance characterization.	Iwasaki T, Kappl R, Bracic G, Shimizu N, Ohmori D, Kumasaka T	J Biol Inorg Chem	10.1007/s00775-011-0793-8	2011	*
Metabolism	Crystallization and preliminary X-ray diffraction studies of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004.	Iwasaki T, Ohmori D, Shimizu N, Kumasaka T	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309107045757	2007	*
Pathogenicity	Extracellular product of Nocardia amarae induces bacterial cell flocculation.	Koizumi J, Takeda M, Mori T	FEMS Microbiol Lett	10.1016/0378-1097(89)90147-x	1989	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#113517

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID206284.1 )

* These data were automatically processed and therefore are not curated

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