Pseudomonas putida U is a human pathogen that was isolated from mud of a stream.
human pathogen 16S sequence Bacteria| @ref 20215 |
Last LPSN update
2026-02-09 11:20:58 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas putida |
| Full scientific name Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 4796 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive  | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 4796 | MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) | Medium recipe at MediaDive | Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457; with strain-specific modifications) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l Phenol 0.4 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 4796 | positive | growth | 28 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | + | hydrolysis | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | + | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
Metadata FA analysis  | |||||||||||||||||||||||||||||||||||||||||||
| @ref | 44597 | ||||||||||||||||||||||||||||||||||||||||||
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| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Environmental | #Terrestrial | #Mud (Sludge) | |
| #Environmental | #Aquatic | #River (Creek) |
Global distribution of 16S sequence AF094741 (>99% sequence identity) for Pseudomonas from Microbeatlas 
 Aquatic Samples |
543 |
 Soil Samples |
368 |
 Animal Samples |
799 |
 Plant Samples |
423 |
| Total Samples | 2133 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Pseudomonas putida strain ATCC 17514 16S ribosomal RNA gene, partial sequence | AF094741 | 1477 |   | 303 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Green Design and Life Cycle Assessment of Novel Thiophene-Based Surfactants to Balance Their Synthesis Performance and Environmental Impact. | Stoica C, Banciu AR, Idriss H, Lian JZ, Patrascu AM, Cucurachi S, Richeter S, Clement S, Nita-Lazar M. | Materials (Basel) | 10.3390/ma18122701 | 2025 | | |
| Growth kinetics of Pseudomonas aeruginosa RS1 on fluorene and dibenzothiophene, concomitant degradation kinetics and uptake mechanism. | Ghosh P, Mukherji S. | 3 Biotech | 10.1007/s13205-021-02742-7 | 2021 | | |
| Metabolism | OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes. | Saraiva JP, Bartholomaus A, Kallies R, Gomes M, Bicalho M, Coelho Kasmanas J, Vogt C, Chatzinotas A, Stadler P, Dias O, Nunes da Rocha U. | Life Sci Alliance | 10.26508/lsa.202101167 | 2021 | |
| Biodegradation modeling of phenol using Curtobacterium flaccumfaciens as plant-growth-promoting bacteria. | Khleifat K, Magharbeh M, Alqaraleh M, Al-Sarayrah M, Alfarrayeh I, Al Qaisi Y, Alsarayreh A, Alkafaween M. | Heliyon | 10.1016/j.heliyon.2022.e10490 | 2022 | | |
| Waste biorefinery towards a sustainable circular bioeconomy: a solution to global issues. | Leong HY, Chang CK, Khoo KS, Chew KW, Chia SR, Lim JW, Chang JS, Show PL. | Biotechnol Biofuels | 10.1186/s13068-021-01939-5 | 2021 | | |
| Identification of the Inducing Agent of the 2,4-Dichlorophenoxyacetic Acid Pathway Encoded by Plasmid pJP4. | Filer K, Harker AR. | Appl Environ Microbiol | 10.1128/aem.63.1.317-320.1997 | 1997 | | |
| Practical considerations and challenges involved in surfactant enhanced bioremediation of oil. | Mohanty S, Jasmine J, Mukherji S. | Biomed Res Int | 10.1155/2013/328608 | 2013 | | |
| The extent of functional redundancy changes as species' roles shift in different environments. | Fetzer I, Johst K, Schawe R, Banitz T, Harms H, Chatzinotas A. | Proc Natl Acad Sci U S A | 10.1073/pnas.1505587112 | 2015 | | |
| Metabolism | Degradation of phenol by Pseudomonas putida ATCC 11172 in continuous culture at different ratios of biofilm surface to culture volume. | Molin G, Nilsson I. | Appl Environ Microbiol | 10.1128/aem.50.4.946-950.1985 | 1985 | |
| Metabolism | Mutants of Pseudomonas cepacia G4 defective in catabolism of aromatic compounds and trichloroethylene. | Shields MS, Montgomery SO, Cuskey SM, Chapman PJ, Pritchard PH. | Appl Environ Microbiol | 10.1128/aem.57.7.1935-1941.1991 | 1991 | |
| Effects of 2,4-dichlorophenol, a metabolite of a genetically engineered bacterium, and 2,4-dichlorophenoxyacetate on some microorganism-mediated ecological processes in soil. | Short KA, Doyle JD, King RJ, Seidler RJ, Stotzky G, Olsen RH. | Appl Environ Microbiol | 10.1128/aem.57.2.412-418.1991 | 1991 | | |
| Metabolism | Role of catechol and the methylcatechols as inducers of aromatic metabolism in Pseudomonas putida. | Murray K, Williams PA. | J Bacteriol | 10.1128/jb.117.3.1153-1157.1974 | 1974 | |
| Metabolism | Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600. | Shingler V, Powlowski J, Marklund U. | J Bacteriol | 10.1128/jb.174.3.711-724.1992 | 1992 | |
| Metabolism | Phenoxyacetic acid degradation by the 2,4-dichlorophenoxyacetic acid (TFD) pathway of plasmid pJP4: mapping and characterization of the TFD regulatory gene, tfdR. | Harker AR, Olsen RH, Seidler RJ. | J Bacteriol | 10.1128/jb.171.1.314-320.1989 | 1989 | |
| Metabolism | Growth in coculture stimulates metabolism of the phenylurea herbicide isoproturon by Sphingomonas sp. strain SRS2. | Sorensen SR, Ronen Z, Aamand J. | Appl Environ Microbiol | 10.1128/aem.68.7.3478-3485.2002 | 2002 | |
| Enzymology | Genetic regulation of octane dissimilation plasmid in Pseudomonas. | Chakrabarty AM, Chou G, Gunsalus IC. | Proc Natl Acad Sci U S A | 10.1073/pnas.70.4.1137 | 1973 | |
| Metabolism | Recruitment of a chromosomally encoded maleylacetate reductase for degradation of 2,4-dichlorophenoxyacetic acid by plasmid pJP4. | Kukor JJ, Olsen RH, Siak JS. | J Bacteriol | 10.1128/jb.171.6.3385-3390.1989 | 1989 | |
| Metabolism | Phenol and benzoate metabolism by Pseudomonas putida: regulation of tangential pathways. | Feist CF, Hegeman GD. | J Bacteriol | 10.1128/jb.100.2.869-877.1969 | 1969 | |
| Metabolism | Construction and use of an ipb DNA module to generate Pseudomonas strains with constitutive trichloroethene and isopropylbenzene oxidation activity. | Berendes F, Sabarth N, Averhoff B, Gottschalk G. | Appl Environ Microbiol | 10.1128/aem.64.7.2454-2462.1998 | 1998 | |
| Efficacy of olive leaf extract (Olea europaea L. cv Gentile di Larino) in marinated anchovies (Engraulis encrasicolus, L.) process. | Testa B, Lombardi SJ, Macciola E, Succi M, Tremonte P, Iorizzo M | Heliyon | 10.1016/j.heliyon.2019.e01727 | 2019 | | |
| Metabolism | A standardized pre-treatment method of biofilm flocs for fluorescence microscopic characterization. | Nosyk O, ter Haseborg E, Metzger U, Frimmel FH | J Microbiol Methods | 10.1016/j.mimet.2008.07.024 | 2008 | |
| Enzymology | Fluorene and phenanthrene uptake by Pseudomonas putida ATCC 17514: kinetics and physiological aspects. | Rodrigues AC, Wuertz S, Brito AG, Melo LF | Biotechnol Bioeng | 10.1002/bit.20377 | 2005 | |
| Metabolism | Three-dimensional distribution of GFP-labeled Pseudomonas putida during biofilm formation on solid PAHs assessed by confocal laser scanning microscopy. | Rodrigues AC, Wuertz S, Brito AG, Melo LF | Water Sci Technol | 2003 | | |
| Metabolism | Phenol biodegradation by Pseudomonas putida DSM 548 in a batch reactor. | Monteiro1 AA, Boaventura RA, Rodrigues AE | Biochem Eng J | 10.1016/s1369-703x(00)00072-3 | 2000 | |
| Enzymology | Kinetics of phenol biodegradation in the presence of glucose. | Wang KW, Baltzis BC, Lewandowski GA | Biotechnol Bioeng | 10.1002/(SICI)1097-0290(19960705)51:1<87::AID-BIT10>3.0.CO;2-1 | 1996 | |
| Metabolism | Biodegradation of mixed wastes in continuously operated cyclic reactors. | Wang KW, Tsangaris DM, Baltzis BC, Lewandowski GA | Appl Biochem Biotechnol | 10.1007/BF02941760 | 1996 | |
| Competition between two microbial populations in a sequencing fed-batch reactor: theory, experimental verification, and implications for waste treatment applications. | Dikshitulu S, Baltzis BC, Lewandowski GA, Pavlou S | Biotechnol Bioeng | 10.1002/bit.260420513 | 1993 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive12914.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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