Pseudomonas putida cl-B is a mesophilic human pathogen that was isolated from soil.
mesophilic human pathogen 16S sequence| @ref 20215 |
Last LPSN update
2025-12-16 09:49:58 |
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas putida |
| Full scientific name Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 12675 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive  | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | + | hydrolysis | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| 12675 | Sample typesoil |
Global distribution of 16S sequence AF094746 (>99% sequence identity) for Pseudomonas from Microbeatlas 
 Aquatic Samples |
543 |
 Soil Samples |
368 |
 Animal Samples |
799 |
 Plant Samples |
423 |
| Total Samples | 2133 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Pathogenicity | Survival of Campylobacter jejuni under conditions of atmospheric oxygen tension with the support of Pseudomonas spp. | Hilbert F, Scherwitzel M, Paulsen P, Szostak MP. | Appl Environ Microbiol | 10.1128/aem.01532-10 | 2010 | |
| Genetics | Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies. | Ballerstedt H, Volkers RJ, Mars AE, Hallsworth JE, dos Santos VA, Puchalka J, van Duuren J, Eggink G, Timmis KN, de Bont JA, Wery J. | Appl Microbiol Biotechnol | 10.1007/s00253-007-0914-z | 2007 | |
| Bacterial Transformation of Adamantane and Its Derivatives: Regioselectivity and Biocatalytic Approaches. | Ivanova AA, Vetrova AA. | Biology (Basel) | 10.3390/biology14101429 | 2025 | | |
| Enzymology | The Role of Dioxygen in Microbial Bio-Oxygenation: Challenging Biochemistry, Illustrated by a Short History of a Long Misunderstood Enzyme. | Willetts A. | Microorganisms | 10.3390/microorganisms12020389 | 2024 | |
| Enzymology | Applications of Ene-Reductases in the Synthesis of Flavors and Fragrances. | Fan XY, Yu Y, Yao Y, Li WD, Tao FY, Wang N. | J Agric Food Chem | 10.1021/acs.jafc.4c02897 | 2024 | |
| Enzymology | Inter-Species Redox Coupling by Flavin Reductases and FMN-Dependent Two-Component Monooxygenases Undertaking Nucleophilic Baeyer-Villiger Biooxygenations. | Willetts A. | Microorganisms | 10.3390/microorganisms11010071 | 2022 | |
| Enzymology | Bicyclo[3.2.0]carbocyclic Molecules and Redox Biotransformations: The Evolution of Closed-Loop Artificial Linear Biocatalytic Cascades and Related Redox-Neutral Systems. | Willetts A. | Molecules | 10.3390/molecules28217249 | 2023 | |
| Unraveling the key drivers of bacterial progesterone degradation. | Hernandez-Fernandez G, Ibero J, Garcia JL, Galan B. | mBio | 10.1128/mbio.01077-25 | 2025 | | |
| Metabolism | Discovery of Two Native Baeyer-Villiger Monooxygenases for Asymmetric Synthesis of Bulky Chiral Sulfoxides. | Zhang Y, Liu F, Xu N, Wu YQ, Zheng YC, Zhao Q, Lin G, Yu HL, Xu JH. | Appl Environ Microbiol | 10.1128/aem.00638-18 | 2018 | |
| Exploring the Temperature Effect on Enantioselectivity of a Baeyer-Villiger Biooxidation by the 2,5-DKCMO Module: The SLM Approach. | Rollig R, Paul CE, Duquesne K, Kara S, Alphand V. | Chembiochem | 10.1002/cbic.202200293 | 2022 | | |
| Microbial monoterpene transformations-a review. | Marmulla R, Harder J. | Front Microbiol | 10.3389/fmicb.2014.00346 | 2014 | | |
| Enzymology | Flavin-Dependent Redox Transfers by the Two-Component Diketocamphane Monooxygenases of Camphor-Grown Pseudomonas putida NCIMB 10007. | Willetts A, Kelly D. | Microorganisms | 10.3390/microorganisms4040038 | 2016 | |
| Enzymology | Regulation of Camphor Metabolism: Induction and Repression of Relevant Monooxygenases in Pseudomonas putida NCIMB 10007. | Willetts A, Masters P, Steadman C. | Microorganisms | 10.3390/microorganisms6020041 | 2018 | |
| Enzymology | Structural and Catalytic Characterization of a Fungal Baeyer-Villiger Monooxygenase. | Ferroni FM, Tolmie C, Smit MS, Opperman DJ. | PLoS One | 10.1371/journal.pone.0160186 | 2016 | |
| Recombinant expression and purification of the 2,5-diketocamphane 1,2-monooxygenase from the camphor metabolizing Pseudomonas putida strain NCIMB 10007. | Kadow M, Sass S, Schmidt M, Bornscheuer UT. | AMB Express | 10.1186/2191-0855-1-13 | 2011 | | |
| Metabolism | Identification and characterization of a mandelamide hydrolase and an NAD(P)+-dependent benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633. | McLeish MJ, Kneen MM, Gopalakrishna KN, Koo CW, Babbitt PC, Gerlt JA, Kenyon GL. | J Bacteriol | 10.1128/jb.185.8.2451-2456.2003 | 2003 | |
| Enzymology | Biocatalytic conversion of avermectin to 4"-oxo-avermectin: heterologous expression of the ema1 cytochrome P450 monooxygenase. | Molnar I, Hill DS, Zirkle R, Hammer PE, Gross F, Buckel TG, Jungmann V, Pachlatko JP, Ligon JM. | Appl Environ Microbiol | 10.1128/aem.71.11.6977-6985.2005 | 2005 | |
| Prospecting Biotechnologically-Relevant Monooxygenases from Cold Sediment Metagenomes: An In Silico Approach. | Musumeci MA, Lozada M, Rial DV, Mac Cormack WP, Jansson JK, Sjoling S, Carroll J, Dionisi HM. | Mar Drugs | 10.3390/md15040114 | 2017 | | |
| Effects of dialkoxybenzenes against Varroa destructor and identification of 1-allyloxy-4-propoxybenzene as a promising acaricide candidate. | Dawdani S, O'Neill M, Castillo C, Samano JEM, Higo H, Ibrahim A, Pernal SF, Plettner E. | Sci Rep | 10.1038/s41598-023-38187-6 | 2023 | | |
| Flavoprotein monooxygenases for oxidative biocatalysis: recombinant expression in microbial hosts and applications. | Ceccoli RD, Bianchi DA, Rial DV. | Front Microbiol | 10.3389/fmicb.2014.00025 | 2014 | | |
| Metabolism | Water oxidation by a cytochrome p450: mechanism and function of the reaction. | Prasad B, Mah DJ, Lewis AR, Plettner E. | PLoS One | 10.1371/journal.pone.0061897 | 2013 | |
| Metabolism | Oxidation of methyl tert-butyl ether by alkane hydroxylase in dicyclopropylketone-induced and n-octane-grown Pseudomonas putida GPo1. | Smith CA, Hyman MR. | Appl Environ Microbiol | 10.1128/aem.70.8.4544-4550.2004 | 2004 | |
| Enzymology | Detection of food spoilage and pathogenic bacteria based on ligation detection reaction coupled to flow-through hybridization on membranes. | Bohme K, Cremonesi P, Severgnini M, Villa TG, Fernandez-No IC, Barros-Velazquez J, Castiglioni B, Calo-Mata P. | Biomed Res Int | 10.1155/2014/156323 | 2014 | |
| Metabolism | Novel 2,4-dichlorophenoxyacetic acid degradation genes from oligotrophic Bradyrhizobium sp. strain HW13 isolated from a pristine environment. | Kitagawa W, Takami S, Miyauchi K, Masai E, Kamagata Y, Tiedje JM, Fukuda M. | J Bacteriol | 10.1128/jb.184.2.509-518.2002 | 2002 | |
| Metabolism | Utilization of the plant hormone indole-3-acetic acid for growth by Pseudomonas putida strain 1290. | Leveau JH, Lindow SE. | Appl Environ Microbiol | 10.1128/aem.71.5.2365-2371.2005 | 2005 | |
| Metabolism | Mannitol, a novel bacterial compatible solute in Pseudomonas putida S12. | Kets EP, Galinski EA, de Wit M, de Bont JA, Heipieper HJ. | J Bacteriol | 10.1128/jb.178.23.6665-6670.1996 | 1996 | |
| Regioselective biooxidation of (+)-valencene by recombinant E. coli expressing CYP109B1 from Bacillus subtilis in a two-liquid-phase system. | Girhard M, Machida K, Itoh M, Schmid RD, Arisawa A, Urlacher VB. | Microb Cell Fact | 10.1186/1475-2859-8-36 | 2009 | | |
| Metabolism | Organization and evolution of naphthalene catabolic pathways: sequence of the DNA encoding 2-hydroxychromene-2-carboxylate isomerase and trans-o-hydroxybenzylidenepyruvate hydratase-aldolase from the NAH7 plasmid. | Eaton RW. | J Bacteriol | 10.1128/jb.176.24.7757-7762.1994 | 1994 | |
| Organic-solvent-tolerant bacterium which secretes organic-solvent-stable lipolytic enzyme. | Ogino H, Miyamoto K, Ishikawa H. | Appl Environ Microbiol | 10.1128/aem.60.10.3884-3886.1994 | 1994 | | |
| Metabolism | Transcription of the cam operon and camR genes in Pseudomonas putida PpG1. | Fujita M, Aramaki H, Horiuchi T, Amemura A. | J Bacteriol | 10.1128/jb.175.21.6953-6958.1993 | 1993 | |
| Purification and characterization of a cam repressor (CamR) for the cytochrome P-450cam hydroxylase operon on the Pseudomonas putida CAM plasmid. | Aramaki H, Sagara Y, Kabata H, Shimamoto N, Horiuchi T. | J Bacteriol | 10.1128/jb.177.11.3120-3127.1995 | 1995 | | |
| Atropine Metabolism by Pseudomonas sp. Strain AT3: Evidence for Nortropine as an Intermediate in Tropine Breakdown and Reactions Leading to Succinate. | Bartholomew BA, Smith MJ, Trudgill PW, Hopper DJ. | Appl Environ Microbiol | 10.1128/aem.62.9.3245-3250.1996 | 1996 | | |
| Physiological properties of a Pseudomonas strain which grows with p-xylene in a two-phase (organic-aqueous) medium. | Cruden DL, Wolfram JH, Rogers RD, Gibson DT. | Appl Environ Microbiol | 10.1128/aem.58.9.2723-2729.1992 | 1992 | | |
| Enzymology | Three different 2,3-dihydroxybiphenyl-1,2-dioxygenase genes in the gram-positive polychlorobiphenyl-degrading bacterium Rhodococcus globerulus P6. | Asturias JA, Timmis KN. | J Bacteriol | 10.1128/jb.175.15.4631-4640.1993 | 1993 | |
| Genetics | Genome-driven investigation of compatible solute biosynthesis pathways of Pseudomonas syringae pv. syringae and their contribution to water stress tolerance. | Kurz M, Burch AY, Seip B, Lindow SE, Gross H. | Appl Environ Microbiol | 10.1128/aem.00686-10 | 2010 | |
| Metabolism | Conservation of plasmid-encoded dibenzothiophene desulfurization genes in several rhodococci. | Denis-Larose C, Labbe D, Bergeron H, Jones AM, Greer CW, al-Hawari J, Grossman MJ, Sankey BM, Lau PC. | Appl Environ Microbiol | 10.1128/aem.63.7.2915-2919.1997 | 1997 | |
| camR, a negative regulator locus of the cytochrome P-450cam hydroxylase operon. | Koga H, Aramaki H, Yamaguchi E, Takeuchi K, Horiuchi T, Gunsalus IC. | J Bacteriol | 10.1128/jb.166.3.1089-1095.1986 | 1986 | | |
| Metabolism | Camphor revisited: involvement of a unique monooxygenase in metabolism of 2-oxo-delta 3-4,5,5-trimethylcyclopentenylacetic acid by Pseudomonas putida. | Ougham HJ, Taylor DG, Trudgill PW. | J Bacteriol | 10.1128/jb.153.1.140-152.1983 | 1983 | |
| Metabolism | Rhodococcus erythropolis DCL14 contains a novel degradation pathway for limonene. | van der Werf MJ, Swarts HJ, de Bont JA. | Appl Environ Microbiol | 10.1128/aem.65.5.2092-2102.1999 | 1999 | |
| Metabolism | Biodegradation of the gasoline oxygenates methyl tert-butyl ether, ethyl tert-butyl ether, and tert-amyl methyl ether by propane-oxidizing bacteria. | Steffan RJ, McClay K, Vainberg S, Condee CW, Zhang D. | Appl Environ Microbiol | 10.1128/aem.63.11.4216-4222.1997 | 1997 | |
| Metabolism | Functional analysis of the small component of the 4-hydroxyphenylacetate 3-monooxygenase of Escherichia coli W: a prototype of a new Flavin:NAD(P)H reductase subfamily. | Galan B, Diaz E, Prieto MA, Garcia JL. | J Bacteriol | 10.1128/jb.182.3.627-636.2000 | 2000 | |
| Metabolism | Changes in cytochrome content and electron transport patterns in Pseudomonas putida as a function of growth phase. | Sweet WJ, Peterson JA. | J Bacteriol | 10.1128/jb.133.1.217-224.1978 | 1978 | |
| Genes for two herbicide-inducible cytochromes P-450 from Streptomyces griseolus. | Omer CA, Lenstra R, Litle PJ, Dean C, Tepperman JM, Leto KJ, Romesser JA, O'Keefe DP. | J Bacteriol | 10.1128/jb.172.6.3335-3345.1990 | 1990 | | |
| Magnetic circular dichroism studies. XXV. A preliminary investigation of microsomal cytochromes. | Dolinger PM, Kielczewski M, Trudell JR, Barth G, Linder RE, Bunnenberg E, Djerassi C. | Proc Natl Acad Sci U S A | 10.1073/pnas.71.2.399 | 1974 | | |
| Metabolism | Induction specificity and catabolite repression of the early enzymes in camphor degradation by Pseudomonas putida. | Hartline RA, Gunsalus IC. | J Bacteriol | 10.1128/jb.106.2.468-478.1971 | 1971 | |
| Fine structure mapping of the tryptophan genes in Pseudomonas putida. | Gunsalus C, Gunsalus CF, Chakrabarty AM, Sikes S, Crawford IP. | Genetics | 10.1093/genetics/60.3.419 | 1968 | | |
| Metabolism | Purification and characterization of a Baeyer-Villiger mono-oxygenase from Rhodococcus erythropolis DCL14 involved in three different monocyclic monoterpene degradation pathways. | Van Der Werf MJ. | Biochem J | 10.1042/0264-6021:3470693 | 2000 | |
| Metabolism | Purification and characterization of a two-component monooxygenase that hydroxylates nitrilotriacetate from "Chelatobacter" strain ATCC 29600. | Uetz T, Schneider R, Snozzi M, Egli T. | J Bacteriol | 10.1128/jb.174.4.1179-1188.1992 | 1992 | |
| Epoxidation of short-chain alkenes by resting-cell suspensions of propane-grown bacteria. | Hou CT, Patel R, Laskin AI, Barnabe N, Barist I. | Appl Environ Microbiol | 10.1128/aem.46.1.171-177.1983 | 1983 | | |
| Chromosomal genetics of Pseudomonas. | Holloway BW, Krishnapillai V, Morgan AF. | Microbiol Rev | 10.1128/mr.43.1.73-102.1979 | 1979 | | |
| Genetics | Genomic Reclassification and Phenotypic Characterization of Pseudomonas putida Strains Deposited in Japanese Culture Collections. | Morohoshi T, Yaguchi N, Someya N. | Microbes Environ | 10.1264/jsme2.me23019 | 2023 | |
| Critical Effect of H2O2 in the Agar Plate on the Growth of Laboratory and Environmental Strains. | Watanabe M, Igarashi K, Kato S, Kamagata Y, Kitagawa W. | Microbiol Spectr | 10.1128/spectrum.03336-22 | 2022 | | |
| Metabolism | Identification of indole derivatives as self-growth inhibitors of Symbiobacterium thermophilum, a unique bacterium whose growth depends on coculture with a Bacillus sp. | Watsuji TO, Yamada S, Yamabe T, Watanabe Y, Kato T, Saito T, Ueda K, Beppu T. | Appl Environ Microbiol | 10.1128/aem.02835-06 | 2007 | |
| The Isoenzymic Diketocamphane Monooxygenases of Pseudomonas putida ATCC 17453-An Episodic History and Still Mysterious after 60 Years. | Willetts A | Microorganisms | 10.3390/microorganisms9122593 | 2021 | | |
| Enzymology | Conferring the Metabolic Self-Sufficiency of the CAM Plasmid of Pseudomonas putida ATCC 17453: The Key Role of Putidaredoxin Reductase. | Willetts A | Microorganisms | 10.3390/microorganisms7100395 | 2019 | |
| Characterised Flavin-Dependent Two-Component Monooxygenases from the CAM Plasmid of Pseudomonas putida ATCC 17453 (NCIMB 10007): ketolactonases by Another Name. | Willetts A | Microorganisms | 10.3390/microorganisms7010001 | 2018 | | |
| Metabolism | Chemotaxis by Pseudomonas putida (ATCC 17453) towards camphor involves cytochrome P450cam (CYP101A1). | Balaraman P, Plettner E | Biochim Biophys Acta Gen Subj | 10.1016/j.bbagen.2018.10.018 | 2018 | |
| Metabolism | The production of omega-hydroxy palmitic acid using fatty acid metabolism and cofactor optimization in Escherichia coli. | Sung C, Jung E, Choi KY, Bae JH, Kim M, Kim J, Kim EJ, Kim PI, Kim BG | Appl Microbiol Biotechnol | 10.1007/s00253-015-6630-1 | 2015 | |
| Enzymology | Multiple native flavin reductases in camphor-metabolizing Pseudomonas putida NCIMB 10007: functional interaction with two-component diketocamphane monooxygenase isoenzymes. | Willetts A, Kelly DR | Microbiology (Reading) | 10.1099/mic.0.079913-0 | 2014 | |
| Metabolism | Biodegradation of 1-allyloxy-4-propoxybenzene by selected strains of Pseudomonas putida. | Ebrahimi P, Plettner E | Biodegradation | 10.1007/s10532-013-9638-1 | 2013 | |
| Enzymology | Camphor pathway redux: functional recombinant expression of 2,5- and 3,6-diketocamphane monooxygenases of Pseudomonas putida ATCC 17453 with their cognate flavin reductase catalyzing Baeyer-Villiger reactions. | Iwaki H, Grosse S, Bergeron H, Leisch H, Morley K, Hasegawa Y, Lau PC | Appl Environ Microbiol | 10.1128/AEM.03958-12 | 2013 | |
| Enzymology | Cloning, Baeyer-Villiger biooxidations, and structures of the camphor pathway 2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-coenzyme A monooxygenase of Pseudomonas putida ATCC 17453. | Leisch H, Shi R, Grosse S, Morley K, Bergeron H, Cygler M, Iwaki H, Hasegawa Y, Lau PC | Appl Environ Microbiol | 10.1128/AEM.07694-11 | 2012 | |
| Enzymology | Characterization of cytochrome P450 monooxygenase CYP154H1 from the thermophilic soil bacterium Thermobifida fusca. | Schallmey A, den Besten G, Teune IG, Kembaren RF, Janssen DB | Appl Microbiol Biotechnol | 10.1007/s00253-010-2965-9 | 2010 | |
| Metabolism | Evidence for autoregulation of camR, which encodes a repressor for the cytochrome P-450cam hydroxylase operon on the Pseudomonas putida CAM plasmid. | Aramaki H, Sagara Y, Hosoi M, Horiuchi T | J Bacteriol | 10.1128/jb.175.24.7828-7833.1993 | 1993 | |
| Enzymology | Complete nucleotide sequence of the 5-exo-hydroxycamphor dehydrogenase gene on the CAM plasmid of Pseudomonas putida (ATCC 17453). | Aramaki H, Koga H, Sagara Y, Hosoi M, Horiuchi T | Biochim Biophys Acta | 10.1016/0167-4781(93)90098-x | 1993 | |
| Metabolism | Diketocamphane enantiomer-specific 'Baeyer-Villiger' monooxygenases from camphor-grown Pseudomonas putida ATCC 17453. | Jones KH, Smith RT, Trudgill PW | J Gen Microbiol | 10.1099/00221287-139-4-797 | 1993 | |
| Metabolism | Microbial oxidation of adamantanone by Pseudomonas putida carrying the camphor catabolic plasmid. | Selifonov SA | Biochem Biophys Res Commun | 10.1016/s0006-291x(05)81566-9 | 1992 | |
| Metabolism | Camphor revisited: studies of 2,5-diketocamphane 1,2-monooxygenase from Pseudomonas putida ATCC 17453. | Taylor DG, Trudgill PW | J Bacteriol | 10.1128/jb.165.2.489-497.1986 | 1986 | |
| Enzymology | Nucleotide sequence of the Pseudomonas putida cytochrome P-450cam gene and its expression in Escherichia coli. | Unger BP, Gunsalus IC, Sligar SG | J Biol Chem | S0021-9258(17)36068-4 | 1986 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive12921.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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