Name: Pseudomonas putida S-313
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12899

Type strain:

Species: Pseudomonas putida

Strain Designation: S-313

Culture col. no.: DSM 6884

Strain history: <- A.M. Cook; S-313

NCBI tax ID(s): 303 (species)

SI-ID 48315

DSM 6884

Special Collections

DSMZ

Other strains from Pseudomonas putida

Section

Pseudomonas putida S-313 is a human pathogen that was isolated from industrial sewage plant.

human pathogen
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas putida**
	Full Scientific Name (LPSN)	Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)

	Synonym	"Bacillus* putidus"*
	Synonym	Arthrobacter siderocapsulatus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2656]

Culture medium

NAPHTHALENE SULFONIC ACID MEDIUM (DSMZ Medium 528)

[Ref.: #2656]

Culture medium growth

[Ref.: #2656]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2656]

Culture medium composition

expand / minimize

[Ref.: #2656]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #2656]

Culture medium growth

[Ref.: #2656]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2656]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2656]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #2656]	22832	-	-	-	+	-	-	-	-	+	-	+	+	-	-	+	+	-	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2656]	Sample type/isolated from	industrial sewage plant
[Ref.: #2656]	Geographic location (country and/or sea, region)	Basel
[Ref.: #2656]	Country	Switzerland
[Ref.: #2656]	Country ISO 3 Code	CHE
[Ref.: #2656]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Industrial wastewater
#Engineered	#Waste	#Water treatment plant

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2656]	Pathogenicity (human)	yes
[Ref.: #2656]	Pathogenicity (animal)	yes
[Ref.: #2656]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

[Ref.: #2656]

GC-content

62.1 mol%

Availability in culture collections External links

[Ref.: #2656]

Culture collection no.

DSM 6884

[Ref.: #82112]

SI-ID 48315

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfurization of aromatic sulfonates by rhizosphere bacteria: high diversity of the asfA gene.	Schmalenberger A, Kertesz MA	Environ Microbiol	10.1111/j.1462-2920.2006.01172.x	2007	*
Metabolism	Importance of organosulfur utilization for survival of Pseudomonas putida in soil and rhizosphere.	Mirleau P, Wogelius R, Smith A, Kertesz MA	Appl Environ Microbiol	10.1128/AEM.71.11.6571-6577.2005	2005	*
Metabolism	Succinate complex crystal structures of the alpha-ketoglutarate-dependent dioxygenase AtsK: steric aspects of enzyme self-hydroxylation.	Muller I, Stuckl C, Wakeley J, Kertesz M, Uson I	J Biol Chem	10.1074/jbc.M410840200	2004	*
Metabolism	The role of soil microbes in plant sulphur nutrition.	Kertesz MA, Mirleau P	J Exp Bot	10.1093/jxb/erh176	2004	*
Enzymology	Crystal structure of the alkylsulfatase AtsK: insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily.	Muller I, Kahnert A, Pape T, Sheldrick GM, Meyer-Klaucke W, Dierks T, Kertesz M, Uson I	Biochemistry	10.1021/bi035752v	2004	*
Metabolism	Characterization and identification of genes essential for dimethyl sulfide utilization in Pseudomonas putida strain DS1.	Endoh T, Kasuga K, Horinouchi M, Yoshida T, Habe H, Nojiri H, Omori T	Appl Microbiol Biotechnol	10.1007/s00253-003-1233-7	2003	*
Metabolism	The LysR-type regulator SftR is involved in soil survival and sulphate ester metabolism in Pseudomonas putida.	Kahnert A, Mirleau P, Wait R, Kertesz MA	Environ Microbiol	10.1046/j.1462-2920.2002.00289.x	2002	*
Metabolism	Characterization of a sulfur-regulated oxygenative alkylsulfatase from Pseudomonas putida S-313.	Kahnert A, Kertesz MA	J Biol Chem	10.1074/jbc.M005820200	2000	*
Metabolism	The ssu locus plays a key role in organosulfur metabolism in Pseudomonas putida S-313.	Kahnert A, Vermeij P, Wietek C, James P, Leisinger T, Kertesz MA	J Bacteriol	10.1128/JB.182.10.2869-2878.2000	2000	*
Metabolism	Bioavailability of water-polluting sulfonoaromatic compounds.	Ruff J, Hitzler T, Rein U, Ritter A, Cook AM	Appl Microbiol Biotechnol	10.1007/s002530051545	1999	*
Metabolism	Pathways of assimilative sulfur metabolism in Pseudomonas putida.	Vermeij P, Kertesz MA	J Bacteriol	10.1128/JB.181.18.5833-5837.1999	1999	*
Metabolism	Genetic organization of sulphur-controlled aryl desulphonation in Pseudomonas putida S-313.	Vermeij P, Wietek C, Kahnert A, Wuest T, Kertesz MA	Mol Microbiol	10.1046/j.1365-2958.1999.01398.x	1999	*
Metabolism	The assimilation of sulfur from multiple sources and its correlation with expression of the sulfate-starvation-induced stimulon in Pseudomonas putida S-313.	Beil S, Kertesz MA, Leisinger T, Cook AM	Microbiology (Reading)	10.1099/13500872-142-8-1989	1996	*
	Desulfonation of linear alkylbenzenesulfonate surfactants and related compounds by bacteria.	Kertesz MA, Kolbener P, Stockinger H, Beil S, Cook AM	Appl Environ Microbiol	10.1128/aem.60.7.2296-2303.1994	1994	*

References

#2656

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6884

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68369

Automatically annotated from API 20NE .

#82112

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48315.1 )

* These data were automatically processed and therefore are not curated

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