Name: Pseudomonas putida SQ1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130567

Type strain:

Species: Pseudomonas putida

Strain Designation: SQ1

Culture col. no.: DSM 100120

Strain history: <- D. Schleheck, Dept. Biol., Univ. Konstanz, Germany; SQ1 <- K. Denger and D. Schleheck

NCBI tax ID(s): 303 (species)

SI-ID 402100

DSM 100120

Other strains from Pseudomonas putida

Section

Pseudomonas putida SQ1 is a mesophilic human pathogen that was isolated from littoral sediment.

human pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas putida**
	Full Scientific Name (LPSN)	Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)

	Synonym	"Bacillus* putidus"*
	Synonym	Arthrobacter siderocapsulatus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21480]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #21480]

Culture medium growth

[Ref.: #21480]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21480]

Culture medium composition

expand / minimize

[Ref.: #21480]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #21480]

Culture medium growth

[Ref.: #21480]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21480]

Culture medium composition

expand / minimize

[Ref.: #21480]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #21480]

Culture medium growth

[Ref.: #21480]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21480]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21480]			growth	28 °C

[Ref.: #21480]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21480]	Sample type/isolated from	littoral sediment
[Ref.: #21480]	Geographic location (country and/or sea, region)	Lake Constance
[Ref.: #21480]	Country	Germany
[Ref.: #21480]	Country ISO 3 Code	DEU
[Ref.: #21480]	Continent	Europe
[Ref.: #21480]	Geographic location	47.6958°/9.1930°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21480]	Pathogenicity (human)	yes
[Ref.: #21480]	Pathogenicity (animal)	yes
[Ref.: #21480]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas putida SQ1	GCA_000802565	contig	GenBank	303 tax ID	*
[Ref.: #66792]	Pseudomonas putida SQ1	303.141	wgs	PATRIC	303 tax ID	*
[Ref.: #66792]	Pseudomonas putida SQ1	2524023231	draft	JGI IMG/M	303 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas putida SQ1 PATRIC: 303.141
[Ref.: #69480]	gram-positive	no	98.431	no
[Ref.: #69480]	anaerobic	no	97.867	no
[Ref.: #69480]	halophile	no	88.807	no
[Ref.: #69480]	spore-forming	no	96.16	no
[Ref.: #69480]	glucose-util	yes	92.525	no
[Ref.: #69480]	motile	yes	92.906	no
[Ref.: #69480]	aerobic	yes	94.395	no
[Ref.: #69480]	flagellated	yes	88.425	no
[Ref.: #69480]	thermophile	no	99.877	yes
[Ref.: #69480]	glucose-ferment	no	89.876	no

Availability in culture collections External links

[Ref.: #21480]

Culture collection no.

DSM 100120

[Ref.: #89086]

SI-ID 402100

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21480

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100120

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89086

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402100.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudomonas putida in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF