Pseudomonas putida F1 is a mesophilic human pathogen of the family Pseudomonadaceae.
mesophilic human pathogen genome sequence 16S sequence| @ref 20215 |
Last LPSN update
2025-12-16 09:49:58 |
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas putida |
| Full scientific name Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2881 | MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) | Medium recipe at MediaDive  | Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water | ||
| 2881 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 2881 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | Medium recipe at MediaDive | Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 97.6 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | + | hydrolysis | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | + | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1686v1 assembly for Pseudomonas putida F1 | complete | GCA_000016865   | 351746.6  | 640427132  | 351746 | 24.59 | |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| Resuscitation of Pulsed Electric Field-Treated Staphylococcus aureus and Pseudomonas putida in a Rich Nutrient Medium. | Emanuel E, Dubrovin I, Pogreb R, Pinhasi GA, Cahan R. | Foods | 10.3390/foods10030660 | 2021 | |
| Comparison of mcl-Poly(3-hydroxyalkanoates) synthesis by different Pseudomonas putida strains from crude glycerol: citrate accumulates at high titer under PHA-producing conditions. | Poblete-Castro I, Binger D, Oehlert R, Rohde M. | BMC Biotechnol | 10.1186/s12896-014-0110-z | 2014 | |
| Assessment of bacterial bph gene in Amazonian dark earth and their adjacent soils. | Brossi MJ, Mendes LW, Germano MG, Lima AB, Tsai SM. | PLoS One | 10.1371/journal.pone.0099597 | 2014 | |
| Spectroscopic and Microscopic Characterization of Microbial Biofouling on Aircraft Fuel Tanks. | Gomez-Bolivar J, Warburton MP, Mumford AD, Mujica-Alarcon JF, Anguilano L, Onwukwe U, Barnes J, Chronopoulou M, Ju-Nam Y, Thornton SF, Rolfe SA, Ojeda JJ. | Langmuir | 10.1021/acs.langmuir.3c02803 | 2024 | |
| Study on the Degradation of a Semi-Synthetic Lignin-Acrylic Acid Hydrogel with Common Bacteria Found in Natural Attenuation Processes. | Jimenez-Torres HD, Hernandez-Olmos SL, Reynaga-Delgado E, Orozco-Guareno E. | Polymers (Basel) | 10.3390/polym15122588 | 2023 | |
| Microbial monoterpene transformations-a review. | Marmulla R, Harder J. | Front Microbiol | 10.3389/fmicb.2014.00346 | 2014 | |
| Drosophila attraction, colonization, contagion, and mortality by Pseudomonas spp. and toxicity of their biosurfactants | Tsipa A, Pettemereidi M, Varnava C, Ungor I, Fragkou E, Apidianakis Y. | Appl Microbiol Biotechnol | 2025 | | |
| Advances in bacteriophage-mediated strategies for combating polymicrobial biofilms. | Glizniewicz M, Milek D, Olszewska P, Czajkowski A, Serwin N, Cecerska-Heryc E, Dolegowska B, Grygorcewicz B. | Front Microbiol | 10.3389/fmicb.2023.1320345 | 2023 | |
| Isolation of Polyvalent Bacteriophages by Sequential Multiple-Host Approaches. | Yu P, Mathieu J, Li M, Dai Z, Alvarez PJ. | Appl Environ Microbiol | 10.1128/aem.02382-15 | 2016 | |
| Comparative proteomic analysis reveals mechanistic insights into Pseudomonas putida F1 growth on benzoate and citrate. | Mandalakis M, Panikov N, Dai S, Ray S, Karger BL. | AMB Express | 10.1186/2191-0855-3-64 | 2013 | |
| Distribution, diversity, and activities of sulfur dioxygenases in heterotrophic bacteria. | Liu H, Xin Y, Xun L. | Appl Environ Microbiol | 10.1128/aem.03281-13 | 2014 | |
| Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge. | Thompson DK, Chourey K, Wickham GS, Thieman SB, VerBerkmoes NC, Zhang B, McCarthy AT, Rudisill MA, Shah M, Hettich RL. | BMC Genomics | 10.1186/1471-2164-11-311 | 2010 | |
| Expression of Fap amyloids in Pseudomonas aeruginosa, P. fluorescens, and P. putida results in aggregation and increased biofilm formation. | Dueholm MS, Sondergaard MT, Nilsson M, Christiansen G, Stensballe A, Overgaard MT, Givskov M, Tolker-Nielsen T, Otzen DE, Nielsen PH. | Microbiologyopen | 10.1002/mbo3.81 | 2013 | |
| Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples. | Yu FB, Blainey PC, Schulz F, Woyke T, Horowitz MA, Quake SR. | Elife | 10.7554/elife.26580 | 2017 | |
| Genomic Reclassification and Phenotypic Characterization of Pseudomonas putida Strains Deposited in Japanese Culture Collections. | Morohoshi T, Yaguchi N, Someya N. | Microbes Environ | 10.1264/jsme2.me23019 | 2023 | |
| Involvement of type VI secretion system in secretion of iron chelator pyoverdine in Pseudomonas taiwanensis. | Chen WJ, Kuo TY, Hsieh FC, Chen PY, Wang CS, Shih YL, Lai YM, Liu JR, Yang YL, Shih MC. | Sci Rep | 10.1038/srep32950 | 2016 | |
| Gene Expression during BTEX Biodegradation by a Microbial Consortium Acclimatized to Unleaded Gasoline and a Pseudomonas putida Strain (HM346961) Isolated from It. | Morlett-Chavez JA, Ascacio-Martinez JA, Haskins WE, Acuna-Askar K, Barrera-Saldana HA | Pol J Microbiol | 10.5604/01.3001.0010.7836 | 2017 | |
| Enhancement of the conversion of toluene by Pseudomonas putida F-1 using organic cosolvents. | Rodriguez M Jr, Klasson KT, Davison BH | Appl Biochem Biotechnol | 10.1385/abab:91-93:1-9:195 | 2001 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive12904.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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