Pseudomonas putida JCM 9802 is a mesophilic prokaryote that was isolated from Activated sludge,by enrichment with biphenyl as the sole source of carbon and energy.
mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas putida |
| Full scientific name Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 67770 | positive | growth | 30 | mesophilic |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 67770 | Activated sludge,by enrichment with biphenyl as the sole source of carbon and energy | Kanagawa | Japan | JPN | Asia |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM131214v1 assembly for Pseudomonas putida JCM 9802 | contig | 1295131 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | Pseudomonas putida DNA for 16S rRNA, partial sequence | D87102 | 889 | 303 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.00 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 88.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 93.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 99.19 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 87.18 | no |
| 125438 | aerobic | aerobicⓘ | yes | 93.42 | no |
| 125438 | thermophilic | thermophileⓘ | no | 100.00 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 86.08 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Genomic Reclassification and Phenotypic Characterization of Pseudomonas putida Strains Deposited in Japanese Culture Collections. | Morohoshi T, Yaguchi N, Someya N. | Microbes Environ | 10.1264/jsme2.me23019 | 2023 | |
| Phylogeny | New PCR-based open reading frame typing method for easy, rapid, and reliable identification of Acinetobacter baumannii international epidemic clones without performing multilocus sequence typing. | Suzuki M, Hosoba E, Matsui M, Arakawa Y. | J Clin Microbiol | 10.1128/jcm.01064-14 | 2014 | |
| Phylogeny | Thermoactinomyces guangxiensis sp. nov., a thermophilic actinomycete isolated from mushroom compost. | Wu H, Liu B, Pan S. | Int J Syst Evol Microbiol | 10.1099/ijs.0.000342 | 2015 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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