Name: Pseudomonas putida S16
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24384

Type strain:

Species: Pseudomonas putida

Strain Designation: S16

Culture col. no.: DSM 28022

Strain history: <- P. Xu, Shanghai Jiao Tong Univ., China; S16

NCBI tax ID(s): 303 (species)

SI-ID 403568

DSM 28022

Special Collections

DSMZ

Other strains from Pseudomonas putida

Section

Pseudomonas putida S16 is a Gram-negative human pathogen that was isolated from soil.

Gram-negative
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas putida**
	Full Scientific Name (LPSN)	Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)

	Synonym	"Bacillus* putidus"*
	Synonym	Arthrobacter siderocapsulatus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.5

Multimedia content

[Ref.: #20319]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20319]

Culture medium

MINERAL MEDIUM PH 7.25 (DSMZ Medium 465)

[Ref.: #20319]

Culture medium growth

[Ref.: #20319]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20319]

Culture medium composition

expand / minimize

[Ref.: #20319]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #20319]

Culture medium growth

[Ref.: #20319]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20319]

Culture medium composition

expand / minimize

[Ref.: #20319]

Culture medium

PSEUDOMONAS AGAR F (DSMZ Medium 907)

[Ref.: #20319]

Culture medium growth

[Ref.: #20319]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #20319]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %93.482

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20319]	Sample type/isolated from	soil
[Ref.: #20319]	Geographic location (country and/or sea, region)	Shandong Province, Jinan
[Ref.: #20319]	Country	China
[Ref.: #20319]	Country ISO 3 Code	CHN
[Ref.: #20319]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY574282 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	543
Soil Samples	368
Animal Samples	799
Plant Samples	423
Total Samples	2133

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20319]	Pathogenicity (human)	yes
[Ref.: #20319]	Pathogenicity (animal)	yes
[Ref.: #20319]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20319]	Pseudomonas putida strain S16 16S ribosomal RNA gene, partial sequence	AY574282	1453	GenBank ENA	1042876 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas putida S16	GCA_000219705	complete	GenBank ENA	1042876 tax ID	*
[Ref.: #66792]	Pseudomonas putida S16	1042876.5	complete	PATRIC	1042876 tax ID	*
[Ref.: #66792]	Pseudomonas putida S16	650716076	complete	JGI IMG/M	1042876 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas putida S16 S16 NCBI: GCA_000219705.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	99.658	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	93.482	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.316	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.986	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	88.171	no

Availability in culture collections External links

[Ref.: #20319]

Culture collection no.

DSM 28022

[Ref.: #88294]

SI-ID 403568

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Molecular Deceleration Regulates Toxicant Release to Prevent Cell Damage in Pseudomonas putida S16 (DSM 28022).	Tang H, Zhang K, Hu H, Wu G, Wang W, Zhu X, Liu G, Xu P	mBio	10.1128/mBio.02012-20	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20319

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28022

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88294

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403568.1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas putida S16 S16

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