Pseudomonas putida (DSM 28022, S16)

Cell morphology

Multimedia

• @ref:	20319
  multimedia content:	DSM_28022.jpg
  multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_28022.jpg
  intellectual property rights:	© Leibniz-Institut DSMZ
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
20319	MINERAL MEDIUM PH 7.25 (DSMZ Medium 465)		Medium recipe at MediaDive	Name: MINERAL MEDIUM PH 7.25 (DSMZ Medium 465; with strain-specific modifications) Composition: Na2HPO4 x 2 H2O 3.5 g/l None 2.0 g/l KH2PO4 1.0 g/l MgCl2 x 6 H2O 0.1 g/l None 0.05 g/l Calcium Chloride 0.05 g/l Na2-EDTA 0.0005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l FeSO4 x 7 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water
20319	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
20319	PSEUDOMONAS AGAR F (DSMZ Medium 907)		Medium recipe at MediaDive	Name: PSEUDOMONAS AGAR F (DSMZ Medium 907) Composition: Agar 15.0 g/l Glycerol 10.0 g/l Proteose peptone 10.0 g/l Tryptone 10.0 g/l MgSO4 1.5 g/l K2HPO4 1.5 g/l Distilled water

Culture temp

Oxygen tolerance

Spore formation

Isolation source categories

Isolation

Taxonmaps

69479

Global distribution of 16S sequence AY574282 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	543
Soil Samples	368
Animal Samples	799
Plant Samples	423
Total Samples	2133

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM21970v1 assembly for Pseudomonas putida S16	complete	GCA_000219705	1042876.5	650716076	1042876	99.47

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20319	Pseudomonas putida strain S16 16S ribosomal RNA gene, partial sequence	AY574282	1453		1042876

Predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Regulatory Mechanism of Nicotine Degradation in Pseudomonas putida.	Hu H, Wang L, Wang W, Wu G, Tao F, Xu P, Deng Z, Tang H.	mBio	10.1128/mbio.00602-19	2019
Metabolism	Green strategy from waste to value-added-chemical production: efficient biosynthesis of 6-hydroxy-3-succinoyl-pyridine by an engineered biocatalyst.	Yu H, Tang H, Xu P.	Sci Rep	10.1038/srep05397	2014
Enzymology	Mechanism of the 6-hydroxy-3-succinoyl-pyridine 3-monooxygenase flavoprotein from Pseudomonas putida S16.	Yu H, Hausinger RP, Tang HZ, Xu P.	J Biol Chem	10.1074/jbc.m114.558049	2014
Metabolism	Molecular Deceleration Regulates Toxicant Release to Prevent Cell Damage in Pseudomonas putida S16 (DSM 28022).	Tang H, Zhang K, Hu H, Wu G, Wang W, Zhu X, Liu G, Xu P	mBio	10.1128/mBio.02012-20	2020