Pseudomonas putida (DSM 291, ATCC 12633, DSM 50202)

Name: Pseudomonas putida (DSM 291, ATCC 12633, DSM 50202)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12871

Type strain

Strain Designation 90, A 3.12

Culture col. no. DSM 291 ATCC 12633 DSM 50202 ICPB 2963 NCTC 10936 31 more

NCBI tax ID(s) 1211579 303

Special Collections DSMZ CCUG JCM KCTC CIP Literature strains

History <- IMG <- G.D. Hegemann K. Komagata <-- R. Hugh 827 <-- ATCC 12633 <-- A. B. Pardee <-- R. Y. Stanier A.3.12. CIP <- 1952, F. Jacob, Inst. Pasteur, Paris, France: strain PF 15, Pseudomonas fluorescens <- R.Y. Stanier, Inst. Pasteur, Paris, France: strain A 3.12 (= strain 90)

Links

Pseudomonas putida 90 is an obligate aerobe, Gram-negative, rod-shaped human pathogen that was isolated from lactate enrichment.

Gram-negative rod-shaped obligate aerobe human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 4217

LMG 2257,ATCC 12633,ATCC 23467,CCUG 12690,CCUG 2091,CECT 324,DSM 291,IAM 1236,ICMP 2758,IFO 14164,JCM 3697,NCIB 9494,NCIB 9528,NCTC 10936,PDDCC 2758,NBIMCC 1090,NCIMB 9494,NCIMB9528,HUT 8100,VKM B-1301,CIP 52.191,LMD 68.20,LMD 72.6,CCRC 10459,CFBP 2066,VTT E-92005,KCTC 1644,KCTC 1751,CCM 7156,NCCB 68020,NCCB 72006,NBRC 14164,HAMBI 7,NCAIM B.01634,BCRC 10459,CCT 2357,IAM 1235,ICMP 3510,NCIMB 13936,NCIMB 30162,JCM 13063,NCAIM B.01157,NCAIM B.01444,NCAIM B.01445,NCAIM B.01447,CNCTC 5802,JCM 20120,VKM B-2187,DSM 50202,DSM 50906

@ref 20215

Last LPSN update 2025-12-16 09:49:57

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas putida

Full scientific name Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)

Synonyms (2)

Arthrobacter siderocapsulatus
"Bacillus putidus"

BacDive ID	Other strains from **Pseudomonas putida** (130)	Type strain
12872	P. putida 1593, DSM 295
12873	P. putida C-1, DSM 437, ATCC 23974, DSM 50253
12874	P. putida 77, DSM 1693, ATCC 8209, CCM 380, IFO 3738, ...
12875	P. putida 12/5, DSM 1868
12876	P. putida PaW 340, DSM 2112
12877	P. putida DSM 3226
12880	P. putida mt-2 PaW1, pWWO, DSM 3931, ATCC 33015, NCIB ...
12881	P. putida MT20, pWW20, DSM 3932, NCIB 12186
12882	P. putida MT15, pWW15, DSM 3936, NCIB 12184
12883	P. putida PaW611, pWW53-4, DSM 3937
12884	P. putida PaW701, pWW60-1, DSM 3938, NCIB 12198
12885	P. putida KF439, pKF439, DSM 4011
12886	P. putida PaW736, pWW60-22, DSM 4302, NCIB 12199
12887	P. putida MT53, pWW53, DSM 4303, NCIB 12187
12888	P. putida CAM, PpG1, DSM 4475
12889	P. putida NAH, PpG7, DSM 4476
12890	P. putida NIC, PpG25, DSM 4477
12891	P. putida PpG2100, SAL, DSM 4478
12892	P. putida PaW 130, DSM 5169
12893	P. putida PaW 95, DSM 5170
12894	P. putida CLB250, DSM 5232
12895	P. putida DSM 84, IMG 1513
12896	P. putida mt-2 KT2440, DSM 6125, ATCC 47054, CCUG 56301, ...
12898	P. putida S-832, DSM 6883
12899	P. putida S-313, DSM 6884
12900	P. putida BG1, DSM 6413
12901	P. putida DSM 6521, ATCC 11172, NCIB 8251, JCM 13061, ...
12902	P. putida pUTK9, DSM 6701, RB 1351
12903	P. putida US2, DSM 6755
12904	P. putida F1, PpF1, DSM 6899, ATCC 700007, JCM 31910, ...
12906	P. putida PS, DSM 7189
12907	P. putida Strain G, BKM-BN1123, DSM 7286, BKM BN-1123, ...
12908	P. putida Strain A, DSM 7314, NCIMB 11286, VKM B-1122, ...
12909	P. putida MM1, DSM 9278
12910	P. putida RW20-3b, DSM 11738
12911	P. putida GS1, DSM 12264
12912	P. putida 2-2L, DSM 12585
12913	P. putida PNP1, DSM 12448
12914	P. putida U, DSM 12735, ATCC 17514, NCIMB 10015, CCUG ...
12915	P. putida DSM 13624, IMI 358533
12918	P. putida TM1, DSM 16845
12919	P. putida 50-3-3, IBPM B-20, DSM 46608, CCEB 520, CIP ...
12920	P. putida Berlin 33/2, DSM 50026, CIP 103281
12921	P. putida cl-B, DSM 50198, ATCC 17453, ICPB 2563-77, ...
12922	P. putida 53-2, DSM 50208, ATCC 17485, ICPB 2789-111, ...
12924	P. putida DSM 50257, ATCC 6876, DSM 60118, NCPPB 244, ...
12925	P. putida MT-I1, DSM 21680
12926	P. putida WB, DSM 23849
100159	P. putida ST033293(HKI),
24382	P. putida 160, DSM 50194, ATCC 17529, ICPB 2440-133
24383	P. putida MS of E.E. Snell, DSM 50204, ATCC 17457, ...
24384	P. putida S16, DSM 28022
24385	P. putida B6-2, DSM 28064
130567	P. putida SQ1, DSM 100120
130999	P. putida Z2, DSM 16527
131000	P. putida TEC1, DSM 26234
131001	P. putida TEC1 407.1-delta 2, DSM 26250
131002	P. putida TEC1 407.3-delta2, DSM 26251
131003	P. putida TEC1 407-delta1, DSM 26252
131888	P. putida S13.1.2, DSM 102034
132784	P. putida TEC1 91-delta 1, DSM 26253
134429	P. putida AmMs 106, CIP 104063, ATCC 49128
134979	P. putida CIP 55.5, ATCC 795, IAM 1505, NCDO 754, NCIMB ...
135611	P. putida CIP 59.25, ATCC 12842, NCIMB 8865, JCM 13060, ...
135612	P. putida A3/9, CIP 59.26, NCIMB 8248
135753	P. putida CIP 108916, LMG 1246, ATCC 17430, NCIMB 10534, ...
135983	P. putida CIP 52.195
135984	P. putida CIP 52.196
136153	P. putida CIP 52.193
136154	P. putida CIP 52.197
136155	P. putida CIP 52.198
137196	P. putida CIP 52.194
137217	P. putida CIP 52.190
137776	P. putida 25300, 642-85, CIP 101794
137973	P. putida 340-86, CIP 102341
138643	P. putida 776.85, CIP 101936
138858	P. putida MD 7.3, CIP 59.19, NCIMB 8729
139223	P. putida CIP 52.189
141228	P. putida CCUG 264
141276	P. putida CCUG 553, LMG 2189
141504	P. putida CCUG 2471
141507	P. putida CCUG 2479
141521	P. putida CCUG 2525, NRRL B-2022
142893	P. putida CCUG 15619
143393	P. putida CCUG 18875
144913	P. putida CCUG 27052
145592	P. putida CCUG 28920
145805	P. putida CCUG 29643
146210	P. putida CCUG 30612
146426	P. putida CCUG 31110
146710	P. putida CCUG 32007
147231	P. putida CCUG 33113
147438	P. putida CCUG 33582
147515	P. putida CCUG 33721
147793	P. putida CCUG 34242
148510	P. putida CCUG 35570
149198	P. putida CCUG 37253
150737	P. putida CCUG 42126
153432	P. putida CCUG 49576
153483	P. putida CCUG 49716
153616	P. putida CCUG 50315
153618	P. putida CCUG 50317
154720	P. putida CCUG 54971
155478	P. putida CCUG 57833
156241	P. putida CCUG 60837
156461	P. putida CCUG 61918
161309	P. putida JCM 13062, ATCC 11250, CCM 3656, KCTC 1645, ...
161475	P. putida JCM 14351, ATCC 598, NRRL B-251
162298	P. putida JCM 18798
162685	P. putida JCM 20004, IAM 1002
162686	P. putida JCM 20005, IAM 1003
162700	P. putida JCM 20028, IAM 1049
162701	P. putida JCM 20029, IAM 1050
162713	P. putida JCM 20048, IAM 1094
162723	P. putida JCM 20066, IAM 1128
162741	P. putida JCM 20089, IAM 1177
162752	P. putida JCM 20102, IAM 1200
162760	P. putida JCM 20111, IAM 1218
162761	P. putida JCM 20112, ATCC 17464, IAM 1219
162768	P. putida JCM 20120, IAM 1235
162775	P. putida JCM 20129, IAM 1250
162804	P. putida JCM 20188, ATCC 4359, IAM 1506
162815	P. putida JCM 20228, IAM 1629
165987	P. putida JCM 9045
166071	P. putida JCM 9800
166073	P. putida JCM 9802
174606	P. putida Thor-Nr. 1021, DSM 115323
174607	P. putida 116234, DSM 116234
174608	P. putida 116510, DSM 116510
176535	P. putida NiuAA7, DSM 114486

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Flagellum arrangement	Confidence
22942	negative	rod-shaped	polar
122071	negative	rod-shaped
125438	negative			99
125439	negative			99

Pigmentation

@ref	Production	Name
122071		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
41850	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
27	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
27	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)	Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
27	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
27	PSEUDOMONAS AGAR F (DSMZ Medium 907)	Medium recipe at MediaDive	Name: PSEUDOMONAS AGAR F (DSMZ Medium 907) Composition: Agar 15.0 g/l Glycerol 10.0 g/l Proteose peptone 10.0 g/l Tryptone 10.0 g/l MgSO4 1.5 g/l K2HPO4 1.5 g/l Distilled water
27	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
122071	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
27	positive	growth	25
27	positive	growth	26	mesophilic
27	positive	growth	28
27	positive	growth	37
22942	negative	growth	41
41850	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
122071	positive	growth	25-41
122071	negative	growth	10
122071	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
122071	obligate aerobe
125438	aerobe	93.405
125439	obligate aerobe	95.8

Spore formation

@ref	Spore formation	Confidence
125439		96.5

Compound production

Compoundsiderophore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
122071	NaCl	positive	growth	0-10 %

Observation

67770

ObservationProduction of Acetic acid from ethanol

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
22942	16808 ChEBI	2-dehydro-D-gluconate	+	growth
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
22942	16958 ChEBI	beta-alanine	+	growth
122071	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
122071	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
22942	5291 ChEBI	gelatin	-	hydrolysis
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
22942	15428 ChEBI	glycine	+	growth
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
22942	17268 ChEBI	myo-inositol	+	growth
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
22942	17632 ChEBI	nitrate	+/-	reduction
122071	17632 ChEBI	nitrate	-	reduction
122071	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
122071	16301 ChEBI	nitrite	-	reduction
122071	15882 ChEBI	phenol	+	degradation
22942	27082 ChEBI	trehalose	+	growth
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
22942	27266 ChEBI	valine	+	growth

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
122071	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
67770	30089 ChEBI	acetate
122071	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122071	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122071	amylase	-
22942	arginine dihydrolase	+	3.5.3.6
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
122071	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122071	caseinase	-	3.4.21.50
122071	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
22942	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
122071	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
22942	gelatinase	-
122071	gelatinase	-
68369	gelatinase	-		from API 20NE
122071	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122071	lipase	-
68382	lipase (C 14)	-		from API zym
122071	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122071	ornithine decarboxylase	-	4.1.1.17
122071	oxidase	+
122071	protease	-
68382	trypsin	+	3.4.21.4	from API zym
122071	tryptophan deaminase	-
122071	tween esterase	-
122071	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122071	-	-	-	+	-	+	-	-	+	-	+	+	+	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
27	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	-	+	+	+	+
27	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	-	+	+	+	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122071	not determinedn.d.	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	+	+	+	+	-	+	+	+	+	-	-	-	+	+	+	+	+	-	-	+	-	-	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	-	-
#Engineered	#Laboratory	#Lab enrichment

Isolation

@ref	Sample type
27	lactate enrichment
122071	Environment, Soil

Taxonmaps

69479

Global distribution of 16S sequence Z76667 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	421
Soil Samples	444
Animal Samples	802
Plant Samples	305
Total Samples	1972

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
27			2	Risk group (German classification) According to TRBA 466
122071			1	Risk group (French classification) According to TRBA 466

Phages

@ref	Name	Strain number
124042	Pseudomonas phage Phi Ppu-W4	DSM 291
124042	Pseudomonas phage Phi Ppu-W6	DSM 291
124042	Pseudomonas phage Phi Ppu-W7	DSM 291
124042	Pseudomonas phage Phi Ppu-W11	DSM 291

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2450811v1 assembly for Pseudomonas putida ATCC 12633	complete	GCA_024508115	303.1013	8076789855	303	99.1
66792	ASM41267v1 assembly for Pseudomonas putida NBRC 14164	complete	GCA_000412675	1211579.3	2554235365	1211579	99.02
124043	ASM4980123v1 assembly for Pseudomonas putida ATCC 12633 unadapted DEF2 recombinant strain	contig	GCA_049801235			303	78.04
124043	ASM4980121v1 assembly for Pseudomonas putida ATCC 12633 adapted DEF2 recombinant strain	contig	GCA_049801215			303	78.03
124043	ASM4980125v1 assembly for Pseudomonas putida ATCC 12633 adapted DEF1 recombinant strain	contig	GCA_049801255			303	77.84
124043	ASM4980127v1 assembly for Pseudomonas putida ATCC 12633 unadapted DEF1 recombinant strain	contig	GCA_049801275			303	77.64
67770	43222_D01 assembly for Pseudomonas putida NCTC10936	contig	GCA_900455645	303.534	8052594031	303	77.11
66792	ASM1338700v1 assembly for Pseudomonas putida IPO3752	scaffold	GCA_013387005	303.707		303	53.22

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pseudomonas putida strain ATCC 12633 16S ribosomal RNA gene, partial sequence	AF094736	1492	303
20218	Pseudomonas putida partial 16S rRNA gene, type strain Biotype AT	AJ308313	1371	303
20218	Pseudomonas putida strain ATCC 12633 16S ribosomal RNA gene, partial sequence	JN630890	791	303
27	P.putida 16S rRNA gene	Z76667	1492	303
67770	Pseudomonas putida JCM 13063 gene for 16S rRNA, partial sequence	LC507960	1459	303
124043	Pseudomonas putida gene for 16S rRNA, partial sequence, strain: NBRC 14164.	AB680572	1462	303
124043	Pseudomonas putida (strain IFO 14164 (ATCC 12633)) gene for 16S ribosomal RNA, partial sequence.	D37923	1329	303
124043	Pseudomonas putida 16S rRNA gene, complete sequence.	D84020	1527	303
124043	Pseudomonas putida strain BCRC 10459 16S-23S ribosomal RNA intergenic spacer, complete sequence.	EU014557	508	303
124043	Pseudomonas putida strain BCRC 10459 16S-23S ribosomal RNA intergenic spacer, complete sequence.	EU014558	471	303
124043	Pseudomonas putida strain BCRC 10459 16S-23S ribosomal RNA intergenic spacer, complete sequence.	EU014559	317	303
124043	Pseudomonas putida strain ATCC 12633 16S ribosomal RNA gene, partial sequence.	OQ683798	1492	303
124043	Pseudomonas putida culture DSM:291 16S ribosomal RNA gene, partial sequence.	KX186966	1431	303
124043	Pseudomonas putida strain ATCC 12633 16S ribosomal RNA gene, partial sequence.	MG708344	1408	303
124043	Pseudomonas putida strain NBRC 14164 16S ribosomal RNA gene, partial sequence.	MG645383	272	303
124043	Pseudomonas putida strain NBRC 14164 16S ribosomal RNA gene, partial sequence.	KY952686	1472	303

GC content

@ref	GC-content (mol%)	Method
27	62.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas putida NBRC 14164
NCBI: GCA_000412675

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.00	no
125439	motility	BacteriaNetⓘ	yes	88.50	no
125439	spore_formation	BacteriaNetⓘ	no	96.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas putida NBRC 14164 NBRC 14164
NCBI: GCA_000412675.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	99.10	yes
125438	aerobic	aerobicⓘ	yes	93.41	no
125438	spore-forming	spore-formingⓘ	no	87.53	no
125438	thermophilic	thermophileⓘ	no	98.99	yes
125438	flagellated	motile2+ⓘ	yes	89.04	no

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Pathogenicity	In Vitro Antibacterial Properties of Cefiderocol, a Novel Siderophore Cephalosporin, against Gram-Negative Bacteria.	Ito A, Sato T, Ota M, Takemura M, Nishikawa T, Toba S, Kohira N, Miyagawa S, Ishibashi N, Matsumoto S, Nakamura R, Tsuji M, Yamano Y.	Antimicrob Agents Chemother	10.1128/aac.01454-17	2018
Metabolism	Enumeration of respiring Pseudomonas spp. in milk within 6 hours by fluorescence in situ hybridization following formazan reduction.	Kitaguchi A, Yamaguchi N, Nasu M.	Appl Environ Microbiol	10.1128/aem.71.5.2748-2752.2005	2005
Enzymology	Rapid and simple quantification of bacterial cells by using a microfluidic device.	Sakamoto C, Yamaguchi N, Nasu M.	Appl Environ Microbiol	10.1128/aem.71.2.1117-1121.2005	2005
Metabolism	Acyloin formation by benzoylformate decarboxylase from Pseudomonas putida.	Wilcocks R, Ward OP, Collins S, Dewdney NJ, Hong Y, Prosen E.	Appl Environ Microbiol	10.1128/aem.58.5.1699-1704.1992	1992
Metabolism	Degradation of triphenyltin by a fluorescent pseudomonad.	Inoue H, Takimura O, Fuse H, Murakami K, Kamimura K, Yamaoka Y.	Appl Environ Microbiol	10.1128/aem.66.8.3492-3498.2000	2000
Phylogeny	Rapid identification of Staphylococcus aureus directly from blood cultures by fluorescence in situ hybridization with peptide nucleic acid probes.	Oliveira K, Procop GW, Wilson D, Coull J, Stender H.	J Clin Microbiol	10.1128/jcm.40.1.247-251.2002	2002
Metabolism	Fluorescent pseudomonad pyoverdines bind and oxidize ferrous ion.	Xiao R, Kisaalita WS.	Appl Environ Microbiol	10.1128/aem.64.4.1472-1476.1998	1998
	RSF1010 plasmid as a potentially useful vector in Pseudomonas species.	Nagahari K, Sakaguchi K.	J Bacteriol	10.1128/jb.133.3.1527-1529.1978	1978
	The active partition gene incC of IncP plasmids is required for stable maintenance in a broad range of hosts.	Siddique A, Figurski DH.	J Bacteriol	10.1128/jb.184.6.1788-1793.2002	2002
	Enzymatic determination of itoic acid, a Bacillus subtilis siderophore, and 2,3-dihydroxybenzoic acid.	Ito T.	Appl Environ Microbiol	10.1128/aem.59.7.2343-2345.1993	1993
Metabolism	Characterization of the pcaR regulatory gene from Pseudomonas putida, which is required for the complete degradation of p-hydroxybenzoate.	Romero-Steiner S, Parales RE, Harwood CS, Houghton JE.	J Bacteriol	10.1128/jb.176.18.5771-5779.1994	1994
Enzymology	Purification to homogeneity and characterization of a novel Pseudomonas putida chromate reductase.	Park CH, Keyhan M, Wielinga B, Fendorf S, Matin A.	Appl Environ Microbiol	10.1128/aem.66.5.1788-1795.2000	2000
	Iron-chelating compounds produced by soil pseudomonads: correlation with fungal growth inhibition.	Vandenbergh PA, Gonzalez CF, Wright AM, Kunka BS.	Appl Environ Microbiol	10.1128/aem.46.1.128-132.1983	1983
Metabolism	Elucidation of the regulon and cis-acting regulatory element of HrpB, the AraC-type regulator of a plant pathogen-like type III secretion system in Burkholderia pseudomallei.	Lipscomb L, Schell MA.	J Bacteriol	10.1128/jb.01379-10	2011
Metabolism	D-glucose and D-gluconate transport in vesicles from Pseudomonas putida.	Al-Jobore A, Moses G, Taylor NF.	Can J Biochem	10.1139/o80-189	1980
	Outbreak of Pseudomonas fluorescens bacteremia among oncology patients.	Hsueh PR, Teng LJ, Pan HJ, Chen YC, Sun CC, Ho SW, Luh KT.	J Clin Microbiol	10.1128/jcm.36.10.2914-2917.1998	1998
	Monoclonal Antibodies to Ferric Pseudobactin, the Siderophore of Plant Growth-Promoting Pseudomonas putida B10.	Buyer JS, Sikora LJ, Kratzke MG.	Appl Environ Microbiol	10.1128/aem.56.2.419-424.1990	1990
	Recent Advances in Metabolically Engineered Microorganisms for the Production of Aromatic Chemicals Derived From Aromatic Amino Acids.	Shen YP, Niu FX, Yan ZB, Fong LS, Huang YB, Liu JZ.	Front Bioeng Biotechnol	10.3389/fbioe.2020.00407	2020
	Development of amplified fragment length polymorphism-derived functional strain-specific markers to assess the persistence of 10 bacterial strains in soil microcosms.	Xiang SR, Cook M, Saucier S, Gillespie P, Socha R, Scroggins R, Beaudette LA.	Appl Environ Microbiol	10.1128/aem.00574-10	2010
	Engineering Modular Viral Scaffolds for Targeted Bacterial Population Editing.	Ando H, Lemire S, Pires DP, Lu TK.	Cell Syst	10.1016/j.cels.2015.08.013	2015
Enzymology	Immunological and structural relatedness of catabolic ornithine carbamoyltransferases and the anabolic enzymes of enterobacteria.	Falmagne P, Portetelle D, Stalon V.	J Bacteriol	10.1128/jb.161.2.714-719.1985	1985
Metabolism	Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6.	Agaras BC, Iriarte A, Valverde CF.	PLoS One	10.1371/journal.pone.0194088	2018
Metabolism	Production of rhamnolipids by Pseudomonas chlororaphis, a nonpathogenic bacterium.	Gunther NW, Nunez A, Fett W, Solaiman DK.	Appl Environ Microbiol	10.1128/aem.71.5.2288-2293.2005	2005
Enzymology	Isolation of bacteriophages specific to a fish pathogen, Pseudomonas plecoglossicida, as a candidate for disease control.	Park SC, Shimamura I, Fukunaga M, Mori KI, Nakai T.	Appl Environ Microbiol	10.1128/aem.66.4.1416-1422.2000	2000
Enzymology	Highly sensitive real-time PCR for specific detection and quantification of Coxiella burnetii.	Klee SR, Tyczka J, Ellerbrok H, Franz T, Linke S, Baljer G, Appel B.	BMC Microbiol	10.1186/1471-2180-6-2	2006
	Studies on the sensitivity and specificity of the Limulus amebocyte lysate test and rabbit pyrogen assays.	Devleeschouwer MJ, Cornil MF, Dony J.	Appl Environ Microbiol	10.1128/aem.50.6.1509-1511.1985	1985
	Growth of genetically engineered Pseudomonas aeruginosa and Pseudomonas putida in soil and rhizosphere.	Yeung KH, Schell MA, Hartel PG.	Appl Environ Microbiol	10.1128/aem.55.12.3243-3246.1989	1989
	Use of ureidopenicillins for selection of plasmid vector transformants in Pseudomonas aeruginosa and Pseudomonas putida.	Day DL, Yasinow D, McDonough J, Shuster CW.	J Bacteriol	10.1128/jb.157.3.937-939.1984	1984
Enzymology	Purification and crystallization of benzoylformate decarboxylase.	Hasson MS, Muscate A, Henehan GT, Guidinger PF, Petsko GA, Ringe D, Kenyon GL.	Protein Sci	10.1002/pro.5560040515	1995
	Mutational and crystallographic analysis of l-amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813: Interconversion between oxidase and monooxygenase activities.	Matsui D, Im DH, Sugawara A, Fukuta Y, Fushinobu S, Isobe K, Asano Y.	FEBS Open Bio	10.1016/j.fob.2014.02.002	2014
	Selection of bacteria with favorable transport properties through porous rock for the application of microbial-enhanced oil recovery.	Jang LK, Chang PW, Findley JE, Yen TF.	Appl Environ Microbiol	10.1128/aem.46.5.1066-1072.1983	1983
Metabolism	Nucleotide sequence of the gene encoding the repressor for the histidine utilization genes of Pseudomonas putida.	Allison SL, Phillips AT.	J Bacteriol	10.1128/jb.172.9.5470-5476.1990	1990
Enzymology	Improved method of selection for mutants of Pseudomonas putida.	Carhart G, Hegeman G.	Appl Microbiol	10.1128/am.30.6.1046-1047.1975	1975
Enzymology	Purification and properties of formylglutamate amidohydrolase from Pseudomonas putida.	Hu L, Mulfinger LM, Phillips AT.	J Bacteriol	10.1128/jb.169.10.4696-4702.1987	1987
Metabolism	Detection and quantification of methyl tert-butyl ether-degrading strain PM1 by real-time TaqMan PCR.	Hristova KR, Lutenegger CM, Scow KM.	Appl Environ Microbiol	10.1128/aem.67.11.5154-5160.2001	2001
Metabolism	Purification of glucose-inducible outer membrane protein OprB of Pseudomonas putida and reconstitution of glucose-specific pores.	Saravolac EG, Taylor NF, Benz R, Hancock RE.	J Bacteriol	10.1128/jb.173.16.4970-4976.1991	1991
	Expression of the argF gene of Pseudomonas aeruginosa in Pseudomonas aeruginosa, Pseudomonas putida, and Escherichia coli.	Clarke PH, Laverack PD.	J Bacteriol	10.1128/jb.154.1.508-512.1983	1983
Metabolism	Inability of muconate cycloisomerases to cause dehalogenation during conversion of 2-chloro-cis,cis-muconate.	Vollmer MD, Fischer P, Knackmuss HJ, Schlomann M.	J Bacteriol	10.1128/jb.176.14.4366-4375.1994	1994
Metabolism	Roles of cysteine sulfinate and transaminase on in vitro dark reversion of urocanase in Pseudomonas putida.	Hug DH, Hunter JK.	J Bacteriol	10.1128/jb.151.2.813-818.1982	1982
	Conservation of PcaQ, a transcriptional activator of pca genes for catabolism of phenolic compounds, in Agrobacterium tumefaciens and Rhizobium species.	Parke D.	J Bacteriol	10.1128/jb.178.12.3671-3675.1996	1996
Metabolism	Comparison of kinetics of active tetracycline uptake and active tetracycline efflux in sensitive and plasmid RP4-containing Pseudomonas putida.	Hedstrom RC, Crider BP, Eagon RG.	J Bacteriol	10.1128/jb.152.1.255-259.1982	1982
Enzymology	Monoclonal antibodies against Pseudomonas aeruginosa outer membrane antigens: isolation and characterization.	Hancock RE, Wieczorek AA, Mutharia LM, Poole K.	Infect Immun	10.1128/iai.37.1.166-171.1982	1982
Metabolism	Cloning of genes specifying carbohydrate catabolism in Pseudomonas aeruginosa and Pseudomonas putida.	Cuskey SM, Wolff JA, Phibbs PV, Olsen RH.	J Bacteriol	10.1128/jb.162.3.865-871.1985	1985
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
Genetics	A new experimental approach for studying bacterial genomic island evolution identifies island genes with bacterial host-specific expression patterns.	Wilson JW, Nickerson CA.	BMC Evol Biol	10.1186/1471-2148-6-2	2006
Metabolism	Glucolysis in Pseudomonas putida: physiological role of alternative routes from the analysis of defective mutants.	Vicente M, Canovas JL.	J Bacteriol	10.1128/jb.116.2.908-914.1973	1973
Enzymology	BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay.	Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, Price LB.	BMC Microbiol	10.1186/1471-2180-12-56	2012
Enzymology	Incidence and identification of Pseudomonas fluorescens and Pseudomonas putida in the clinical laboratory.	Blazevic DJ, Koepcke MH, Matsen JM.	Appl Microbiol	10.1128/am.25.1.107-110.1973	1973
Metabolism	Organization and multiple regulation of histidine utilization genes in Pseudomonas putida.	Hu L, Phillips AT.	J Bacteriol	10.1128/jb.170.9.4272-4279.1988	1988
Metabolism	Cloning and transfer of the Salmonella pathogenicity island 2 type III secretion system for studies of a range of gram-negative genera.	Wilson JW, Coleman C, Nickerson CA.	Appl Environ Microbiol	10.1128/aem.00952-07	2007
Metabolism	The active transport of 2-keto-D-gluconate in vesicles prepared from Pseudomonas purida.	Agbanyo F, Taylor NF.	Biochem J	10.1042/bj2280257	1985
Metabolism	Program of bacteriophage gh-1 DNA transcription in infected Pseudomonas putida.	Jolly JF.	J Virol	10.1128/jvi.30.3.771-776.1979	1979
Metabolism	Regulation of the hemA gene during 5-aminolevulinic acid formation in Pseudomonas aeruginosa.	Hungerer C, Troup B, Romling U, Jahn D.	J Bacteriol	10.1128/jb.177.6.1435-1443.1995	1995
Enzymology	Involvement of threonine dehydratase in biosynthesis of the alpha-ketobutyrate prosthetic group of urocanase.	Daumy GO, Cohn MS, Phillips AT.	J Bacteriol	10.1128/jb.120.3.1249-1255.1974	1974
Enzymology	Cyclic adenosine 3',5'-monophosphate levels in Pseudomonas putida and Pseudomonas aeruginosa during induction and carbon catabolite repression of histidase synthesis.	Phillips AT, Mulfinger LM.	J Bacteriol	10.1128/jb.145.3.1286-1292.1981	1981
	Development of a vital fluorescent staining method for monitoring bacterial transport in subsurface environments.	Fuller ME, Streger SH, Rothmel RK, Mailloux BJ, Hall JA, Onstott TC, Fredrickson JK, Balkwill DL, DeFlaun MF.	Appl Environ Microbiol	10.1128/aem.66.10.4486-4496.2000	2000
	Integration of R91-5::Tn501 into the Pseudomonas putida PPN chromosome and genetic circularity of the chromosomal map.	Dean HF, Morgan AF.	J Bacteriol	10.1128/jb.153.1.485-497.1983	1983
	Effect of Two Plant Species, Flax (Linum usitatissinum L.) and Tomato (Lycopersicon esculentum Mill.), on the Diversity of Soilborne Populations of Fluorescent Pseudomonads.	Lemanceau P, Corberand T, Gardan L, Latour X, Laguerre G, Boeufgras J, Alabouvette C.	Appl Environ Microbiol	10.1128/aem.61.3.1004-1012.1995	1995
Enzymology	Different types of dienelactone hydrolase in 4-fluorobenzoate-utilizing bacteria.	Schlomann M, Schmidt E, Knackmuss HJ.	J Bacteriol	10.1128/jb.172.9.5112-5118.1990	1990
Metabolism	Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid.	Williams PA, Murray K.	J Bacteriol	10.1128/jb.120.1.416-423.1974	1974
Metabolism	Cloning and expression in Escherichia coli of histidine utilization genes from Pseudomonas putida.	Consevage MW, Porter RD, Phillips AT.	J Bacteriol	10.1128/jb.162.1.138-146.1985	1985
	Sterility of salmonid roe and practicality of hatching gnotobiotic salmonid fish.	Trust TJ.	Appl Microbiol	10.1128/am.28.3.340-341.1974	1974
Metabolism	A novel tetrahydrofolate-dependent O-demethylase gene is essential for growth of Sphingomonas paucimobilis SYK-6 with syringate.	Masai E, Sasaki M, Minakawa Y, Abe T, Sonoki T, Miyauchi K, Katayama Y, Fukuda M.	J Bacteriol	10.1128/jb.186.9.2757-2765.2004	2004
Metabolism	Headspace analysis of volatile metabolites of Pseudomonas aeruginosa and related species by gas chromatography-mass spectrometry.	Labows JN, McGinley KJ, Webster GF, Leyden JJ.	J Clin Microbiol	10.1128/jcm.12.4.521-526.1980	1980
Enzymology	Detection of Helicobacter pylori in stomach tissue by use of a monoclonal antibody.	Husson MO, Leclerc H.	J Clin Microbiol	10.1128/jcm.29.12.2831-2834.1991	1991
	Formation of Filaments by Pseudomonas putida.	Jensen RH, Woolfolk CA.	Appl Environ Microbiol	10.1128/aem.50.2.364-372.1985	1985
Enzymology	Constitutive synthesis of enzymes of the protocatechuate pathway and of the beta-ketoadipate uptake system in mutant strains of Pseudomonas putida.	Parke D, Ornston LN.	J Bacteriol	10.1128/jb.126.1.272-281.1976	1976
Metabolism	Bacterial formation and metabolism of 6-hydroxyhexanoate: evidence of a potential role for omega-oxidation.	Kunz DA, Weimer PJ.	J Bacteriol	10.1128/jb.156.2.567-575.1983	1983
Phylogeny	Identification of nitrite-oxidizing bacteria with monoclonal antibodies recognizing the nitrite oxidoreductase.	Bartosch S, Wolgast I, Spieck E, Bock E.	Appl Environ Microbiol	10.1128/aem.65.9.4126-4133.1999	1999
	Detection of Plasmid Transfer from Pseudomonas fluorescens to Indigenous Bacteria in Soil by Using Bacteriophage phiR2f for Donor Counterselection.	Smit E, van Elsas JD, van Veen JA, de Vos WM.	Appl Environ Microbiol	10.1128/aem.57.12.3482-3488.1991	1991
	Temporal Variation in Genetic Diversity and Structure of a Lotic Population of Burkholderia (Pseudomonas) cepacia.	Wise MG, McArthur JV, Wheat C, Shimkets LJ.	Appl Environ Microbiol	10.1128/aem.62.5.1558-1562.1996	1996
	Psychrotolerant bacteria isolated from arctic soil that degrade polychlorinated biphenyls at low temperatures	Master ER, Mohn WW.	Appl Environ Microbiol	10.1128/aem.64.12.4823-4829.1998	1998
Metabolism	Properties of an inducible uptake system for beta-ketoadipate in Pseudomonas putida.	Ornston LN, Parke D.	J Bacteriol	10.1128/jb.125.2.475-488.1976	1976
Metabolism	The genetic control of dissimilatory pathways in Pseudomonas putida.	Wheelis ML, Stanier RY.	Genetics	10.1093/genetics/66.2.245	1970
Biotechnology	Numerical taxonomy of gram-negative, nonmotile, nonfermentative bacteria isolated during chilled storage of lamb carcasses.	Prieto M, Garcia-Armesto MR, Garcia-Lopez ML, Otero A, Moreno B.	Appl Environ Microbiol	10.1128/aem.58.7.2245-2249.1992	1992
Metabolism	Distribution and significance of heterotrophic marine bacteria with antibacterial activity.	Nair S, Simidu U.	Appl Environ Microbiol	10.1128/aem.53.12.2957-2962.1987	1987
Metabolism	Inhibition, but not uncoupling, of respiratory energy coupling of three bacterial species by nitrite.	Rake JB, Eagon RG.	J Bacteriol	10.1128/jb.144.3.975-982.1980	1980
Enzymology	L-selective amidase with extremely broad substrate specificity from Ochrobactrum anthropi NCIMB 40321.	Sonke T, Ernste S, Tandler RF, Kaptein B, Peeters WP, van Assema FB, Wubbolts MG, Schoemaker HE.	Appl Environ Microbiol	10.1128/aem.71.12.7961-7973.2005	2005
Enzymology	Purification and some properties of maleylpyruvate hydrolase and fumarylpyruvate hydrolase from Pseudomonas alcaligenes.	Bayly RC, Chapman PJ, Dagley S, Di Berardino D.	J Bacteriol	10.1128/jb.143.1.70-77.1980	1980
Metabolism	Molecular genetic analysis of phosphite and hypophosphite oxidation by Pseudomonas stutzeri WM88.	Metcalf WW, Wolfe RS.	J Bacteriol	10.1128/jb.180.21.5547-5558.1998	1998
Enzymology	Detection of arginine dihydrolase in nonfermentative gram-negative bacteria by use of thin-layer chromatography.	Williams GA, Blazevic DJ, Ederer GM.	Appl Microbiol	10.1128/am.22.6.1135-1137.1971	1971
Enzymology	Glutamine synthetase of pseudomonads: some biochemical and physicochemical properties.	Meyer JM, Stadtman ER.	J Bacteriol	10.1128/jb.146.2.705-712.1981	1981
	Enumeration of Vibrio cholerae O1 in Bangladesh waters by fluorescent-antibody direct viable count.	Brayton PR, Tamplin ML, Huq A, Colwell RR.	Appl Environ Microbiol	10.1128/aem.53.12.2862-2865.1987	1987
	Distribution of alginate gene sequences in the Pseudomonas rRNA homology group I-Azomonas-Azotobacter lineage of superfamily B procaryotes.	Fialho AM, Zielinski NA, Fett WF, Chakrabarty AM, Berry A.	Appl Environ Microbiol	10.1128/aem.56.2.436-443.1990	1990
Metabolism	Synthesis of the enzymes of the mandelate pathway by Pseudomonas putida. I. Synthesis of enzymes by the wild type.	Hegeman GD.	J Bacteriol	10.1128/jb.91.3.1140-1154.1966	1966
Metabolism	Pathways for metabolism of ketoaldonic acids in an Erwinia sp.	Truesdell SJ, Sims JC, Boerman PA, Seymour JL, Lazarus RA.	J Bacteriol	10.1128/jb.173.21.6651-6656.1991	1991
Enzymology	Evaluation of an immunofluorescent-antibody test for rapid identification of Pseudomonas aeruginosa in blood cultures.	Counts GW, Schwartz RW, Ulness BK, Hamilton DJ, Rosok MJ, Cunningham MD, Tam MR, Darveau RP.	J Clin Microbiol	10.1128/jcm.26.6.1161-1165.1988	1988
Metabolism	Metabolism of benzoic acid by bacteria: 3,5-cyclohexadiene-1,2-diol-1-carboxylic acid is an intermediate in the formation of catechol.	Reiner AM.	J Bacteriol	10.1128/jb.108.1.89-94.1971	1971
Phylogeny	Methanotroph diversity in landfill soil: isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis.	Wise MG, McArthur JV, Shimkets LJ.	Appl Environ Microbiol	10.1128/aem.65.11.4887-4897.1999	1999
Metabolism	beta-Ketoadipate pathway in Trichosporon cutaneum modified for methyl-substituted metabolites.	Powlowski JB, Dagley S.	J Bacteriol	10.1128/jb.163.3.1126-1135.1985	1985
Metabolism	Pseudomonas aeruginosa mutants affected in anaerobic growth on arginine: evidence for a four-gene cluster encoding the arginine deiminase pathway.	Vander Wauven C, Pierard A, Kley-Raymann M, Haas D.	J Bacteriol	10.1128/jb.160.3.928-934.1984	1984
Enzymology	Cloning and expression of plasmid genes encoding resistances to chromate and cobalt in Alcaligenes eutrophus.	Nies A, Nies DH, Silver S.	J Bacteriol	10.1128/jb.171.9.5065-5070.1989	1989
	Genetic structure of a lotic population of Burkolderia (Pseudomonas) cepacia.	Wise MG, Shimkets LJ, McArthur JV.	Appl Environ Microbiol	10.1128/aem.61.5.1791-1798.1995	1995
Metabolism	Glucose uptake and phosphorylation in Pseudomonas fluorescens.	Eisenberg RC, Butters SJ, Quay SC, Friedman SB.	J Bacteriol	10.1128/jb.120.1.147-153.1974	1974
	Cloning, sequencing, and expression of the gene for NADH-sensitive citrate synthase of Pseudomonas aeruginosa.	Donald LJ, Molgat GF, Duckworth HW.	J Bacteriol	10.1128/jb.171.10.5542-5550.1989	1989
	Response of Neisseria gonorrhoeae to Bdellovibrio species.	Drutz DJ.	Infect Immun	10.1128/iai.13.1.247-251.1976	1976
	DNA-DNA Solution Hybridization Studies of the Bacterial Symbionts of Hydrothermal Vent Tube Worms (Riftia pachyptila and Tevnia jerichonana).	Edwards DB, Nelson DC.	Appl Environ Microbiol	10.1128/aem.57.4.1082-1088.1991	1991
	Surface localization of Pseudomonas aeruginosa outer membrane porin protein F by using monoclonal antibodies.	Mutharia LM, Hancock RE.	Infect Immun	10.1128/iai.42.3.1027-1033.1983	1983
Enzymology	Design and application of rRNA-targeted oligonucleotide probes for the dissimilatory iron- and manganese-reducing bacterium Shewanella putrefaciens.	DiChristina TJ, DeLong EF.	Appl Environ Microbiol	10.1128/aem.59.12.4152-4160.1993	1993
	Chromosomal genetics of Pseudomonas.	Holloway BW, Krishnapillai V, Morgan AF.	Microbiol Rev	10.1128/mr.43.1.73-102.1979	1979
	Characterization of genes involved in biosynthesis of a novel antibiotic from Burkholderia cepacia BC11 and their role in biological control of Rhizoctonia solani.	Kang Y, Carlson R, Tharpe W, Schell MA.	Appl Environ Microbiol	10.1128/aem.64.10.3939-3947.1998	1998
Phylogeny	Comparative study of the aerobic, heterotrophic bacterial flora of Chesapeake Bay and Tokyo Bay.	Austin B, Garges S, Conrad B, Harding EE, Colwell RR, Simidu U, Taga N.	Appl Environ Microbiol	10.1128/aem.37.4.704-714.1979	1979
	Evaluation of aquarium antibiotic formulations.	Trust TJ, Chipman DC.	Antimicrob Agents Chemother	10.1128/aac.6.4.379	1974
	Characteristics of bacteriophages attacking psychrophilic and mesophilic pseudomonads.	Olsen RH, Metcalf ES, Todd JK.	J Virol	10.1128/jvi.2.4.357-364.1968	1968
Phylogeny	Comparative allostery of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthetase as a molecular basis for classification.	Jensen RA, Stenmark SL.	J Bacteriol	10.1128/jb.101.3.763-769.1970	1970
	Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid.	De Ley J.	J Bacteriol	10.1128/jb.101.3.738-754.1970	1970
Phylogeny	New naphthalene-degrading marine Pseudomonas strains.	Garcia-Valdes E, Cozar E, Rotger R, Lalucat J, Ursing J.	Appl Environ Microbiol	10.1128/aem.54.10.2478-2485.1988	1988
Enzymology	Isolation of an atypically small lipoamide dehydrogenase involved in the glycine decarboxylase complex from Eubacterium acidaminophilum.	Freudenberg W, Dietrichs D, Lebertz H, Andreesen JR.	J Bacteriol	10.1128/jb.171.3.1346-1354.1989	1989
Enzymology	Purification and comparative studies of dihydrolipoamide dehydrogenases from the anaerobic, glycine-utilizing bacteria Peptostreptococcus glycinophilus, Clostridium cylindrosporum, and Clostridium sporogenes.	Dietrichs D, Andreesen JR.	J Bacteriol	10.1128/jb.172.1.243-251.1990	1990
Metabolism	Systems biology of electrogenic Pseudomonas putida - multi-omics insights and metabolic engineering for enhanced 2-ketogluconate production.	Weimer A, Pause L, Ries F, Kohlstedt M, Adrian L, Kromer J, Lai B, Wittmann C.	Microb Cell Fact	10.1186/s12934-024-02509-8	2024
	Metabolic bottlenecks of Pseudomonas taiwanensis VLB120 during growth on d-xylose via the Weimberg pathway.	Nerke P, Korb J, Haala F, Hubmann G, Lutz S.	Metab Eng Commun	10.1016/j.mec.2024.e00241	2024
	Revealing oxidative pentose metabolism in new Pseudomonas putida isolates.	Park MR, Gauttam R, Fong B, Chen Y, Lim HG, Feist AM, Mukhopadhyay A, Petzold CJ, Simmons BA, Singer SW.	Environ Microbiol	10.1111/1462-2920.16296	2023
Enzymology	Development of two real-time multiplex PCR assays for the detection and quantification of eight key bacterial pathogens in lower respiratory tract infections.	Gadsby NJ, McHugh MP, Russell CD, Mark H, Conway Morris A, Laurenson IF, Hill AT, Templeton KE.	Clin Microbiol Infect	10.1016/j.cmi.2015.05.004	2015
Phylogeny	Identification of Gram-negative non-fermenters and oxidase-positive fermenters by the Oxi/Ferm tube.	Holmes B, Dowling J, Lapage SP.	J Clin Pathol	10.1136/jcp.32.1.78	1979
	Biohybrids: Textile fibres provide scaffolds and highways for microbial translocation.	Sherry A, Dell'Agnese BM, Scott J.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1188965	2023
Metabolism	Simultaneous fluorescent gram staining and activity assessment of activated sludge bacteria.	Forster S, Snape JR, Lappin-Scott HM, Porter J.	Appl Environ Microbiol	10.1128/aem.68.10.4772-4779.2002	2002
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Genetics	Genomic Reclassification and Phenotypic Characterization of Pseudomonas putida Strains Deposited in Japanese Culture Collections.	Morohoshi T, Yaguchi N, Someya N.	Microbes Environ	10.1264/jsme2.me23019	2023
Enzymology	Efficient removal of 17alpha-ethinylestradiol from secondary wastewater treatment effluent by a biofilm process incorporating biogenic manganese oxide and Pseudomonas putida strain MnB1.	Tran TN, Kim DG, Ko SO.	J Hazard Mater	10.1016/j.jhazmat.2020.122810	2020
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Genetics	First Identification of a Multidrug-Resistant Pseudomonas putida Co-Carrying Five beta-Lactam Resistance Genes Recovered from a Urinary Tract Infection in China.	Bao D, Huang L, Yan J, Li Y, Ruan Z, Jiang T.	Infect Drug Resist	10.2147/idr.s366567	2022
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Metabolism	Identification of the Gene Responsible for Lignin-Derived Low-Molecular-Weight Compound Catabolism in Pseudomonas sp. Strain LLC-1.	Hirose J, Tsukimata R, Miyatake M, Yokoi H.	Genes (Basel)	10.3390/genes11121416	2020
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Metabolism	Synergistic effects of biogenic manganese oxide and Mn(II)-oxidizing bacterium Pseudomonas putida strain MnB1 on the degradation of 17 alpha-ethinylestradiol.	Tran TN, Kim DG, Ko SO.	J Hazard Mater	10.1016/j.jhazmat.2017.10.045	2018
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Metabolism	Functional Characterization and Genomic Analysis of the Chlorantraniliprole-Degrading Strain Pseudomonas Sp. GW13.	Gao W, Li D, You H.	Bioengineering (Basel)	10.3390/bioengineering6040106	2019
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Genetics	Draft genome sequence data of a 4-nitrophenol- degrading bacterium, Pseudomonas alloputida strain PNP.	Arora PK, Saroj RS, Mishra R, Omar RA, Kumari P, Srivastava A, Garg SK, Singh VP.	Data Brief	10.1016/j.dib.2021.107390	2021
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Metabolism	Resolution of alkaloid racemate: a novel microbial approach for the production of enantiopure lupanine via industrial wastewater valorization.	Parmaki S, Tsipa A, Vasquez MI, Goncalves JMJ, Hadjiadamou I, Ferreira FC, Afonso CAM, Drouza C, Koutinas M.	Microb Cell Fact	10.1186/s12934-020-01324-1	2020
Genetics	Identification and specificity validation of unique and antimicrobial resistance genes to trace suspected pathogenic AMR bacteria and to monitor the development of AMR in non-AMR strains in the environment and clinical settings.	Rekadwad BN, Pramod N, Rao MPN, Hashem A, Avila-Quezada GD, Abd Allah EF.	Saudi J Biol Sci	10.1016/j.sjbs.2023.103869	2023
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Genetics	Comparative genomics of the proteostasis network in extreme acidophiles.	Izquierdo-Fiallo K, Munoz-Villagran C, Orellana O, Sjoberg R, Levican G.	PLoS One	10.1371/journal.pone.0291164	2023
Genetics	Draft genome sequence analysis of a Pseudomonas putida W15Oct28 strain with antagonistic activity to Gram-positive and Pseudomonas sp. pathogens.	Ye L, Hildebrand F, Dingemans J, Ballet S, Laus G, Matthijs S, Berendsen R, Cornelis P.	PLoS One	10.1371/journal.pone.0110038	2014
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Genetics	Characterization and Demonstration of Mock Communities as Control Reagents for Accurate Human Microbiome Community Measurements.	Tourlousse DM, Narita K, Miura T, Ohashi A, Matsuda M, Ohyama Y, Shimamura M, Furukawa M, Kasahara K, Kameyama K, Saito S, Goto M, Shimizu R, Mishima R, Nakayama J, Hosomi K, Kunisawa J, Terauchi J, Sekiguchi Y, Kawasaki H.	Microbiol Spectr	10.1128/spectrum.01915-21	2022
Phylogeny	Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages.	Magill DJ, Krylov VN, Shaburova OV, McGrath JW, Allen CCR, Quinn JP, Kulakov LA.	PLoS One	10.1371/journal.pone.0184307	2017
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	A tRNA modification with aminovaleramide facilitates AUA decoding in protein synthesis.	Miyauchi K, Kimura S, Akiyama N, Inoue K, Ishiguro K, Vu TS, Srisuknimit V, Koyama K, Hayashi G, Soma A, Nagao A, Shirouzu M, Okamoto A, Waldor MK, Suzuki T.	Nat Chem Biol	10.1038/s41589-024-01726-x	2025
Genetics	Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa.	Peter S, Oberhettinger P, Schuele L, Dinkelacker A, Vogel W, Dorfel D, Bezdan D, Ossowski S, Marschal M, Liese J, Willmann M.	BMC Genomics	10.1186/s12864-017-4216-2	2017
Metabolism	Manganese-contaminated groundwater treatment by novel bacterial isolates: kinetic study and mechanism analysis using synchrotron-based techniques.	Therdkiattikul N, Ratpukdi T, Kidkhunthod P, Chanlek N, Siripattanakul-Ratpukdi S.	Sci Rep	10.1038/s41598-020-70355-w	2020
Genetics	Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.	Koehorst JJ, Saccenti E, Schaap PJ, Martins Dos Santos VAP, Suarez-Diez M.	F1000Res	10.12688/f1000research.9416.3	2016
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Metabolism	Pyomelanin from Pseudoalteromonas lipolytica reduces biofouling.	Zeng Z, Guo XP, Cai X, Wang P, Li B, Yang JL, Wang X.	Microb Biotechnol	10.1111/1751-7915.12773	2017
Metabolism	Endolysins from Antarctic Pseudomonas Display Lysozyme Activity at Low Temperature.	Orlando M, Pucciarelli S, Lotti M.	Mar Drugs	10.3390/md18110579	2020
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Metabolism	A moderate toxin, GraT, modulates growth rate and stress tolerance of Pseudomonas putida.	Tamman H, Ainelo A, Ainsaar K, Horak R.	J Bacteriol	10.1128/jb.00851-13	2014
Metabolism	Characterization of type II protein secretion (xcp) genes in the plant growth-stimulating Pseudomonas putida, strain WCS358.	de Groot A, Krijger JJ, Filloux A, Tommassen J.	Mol Gen Genet	10.1007/bf02174038	1996
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Metabolism	Pseudomonas putida AlkA and AlkB proteins comprise different defense systems for the repair of alkylation damage to DNA - in vivo, in vitro, and in silico studies.	Mielecki D, Saumaa S, Wrzesinski M, Maciejewska AM, Zuchniewicz K, Sikora A, Piwowarski J, Nieminuszczy J, Kivisaar M, Grzesiuk E.	PLoS One	10.1371/journal.pone.0076198	2013
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Metabolism	Carbon and hydrogen stable isotope fractionation during aerobic bacterial degradation of aromatic hydrocarbons.	Morasch B, Richnow HH, Schink B, Vieth A, Meckenstock RU.	Appl Environ Microbiol	10.1128/aem.68.10.5191-5194.2002	2002
Metabolism	Spatially resolved characterization of biogenic manganese oxide production within a bacterial biofilm.	Toner B, Fakra S, Villalobos M, Warwick T, Sposito G.	Appl Environ Microbiol	10.1128/aem.71.3.1300-1310.2005	2005
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Metabolism	Siderophore-mediated uptake of Fe3+ by the plant growth-stimulating Pseudomonas putida strain WCS358 and by other rhizosphere microorganisms.	de Weger LA, van Arendonk JJ, Recourt K, van der Hofstad GA, Weisbeek PJ, Lugtenberg B.	J Bacteriol	10.1128/jb.170.10.4693-4698.1988	1988
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Metabolism	LlpB represents a second subclass of lectin-like bacteriocins.	Ghequire MGK, De Mot R.	Microb Biotechnol	10.1111/1751-7915.13373	2019
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Metabolism	Novel lectin-like bacteriocins of biocontrol strain Pseudomonas fluorescens Pf-5.	Parret AH, Temmerman K, De Mot R.	Appl Environ Microbiol	10.1128/aem.71.9.5197-5207.2005	2005
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Metabolism	High-performance liquid chromatography analyses of pyoverdin siderophores differentiate among phytopathogenic fluorescent Pseudomonas Species.	Bultreys A, Gheysen I, Wathelet B, Maraite H, de Hoffmann E.	Appl Environ Microbiol	10.1128/aem.69.2.1143-1153.2003	2003
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Enzymology	PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains.	Yamamoto S, Harayama S.	Appl Environ Microbiol	10.1128/aem.61.3.1104-1109.1995	1995
	Plasmid donor affects host range of promiscuous IncP-1beta plasmid pB10 in an activated-sludge microbial community.	De Gelder L, Vandecasteele FP, Brown CJ, Forney LJ, Top EM.	Appl Environ Microbiol	10.1128/aem.71.9.5309-5317.2005	2005
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	Synergistic enhancement of heavy metal tolerance and reduction by indigenous bacterial consortia of Pseudomonas putida and Pasteurella aerogenes.	Qurbani K, Wsw H, Khdhr R, Hussein S, Ibrahim B, Mahmood A, Hama L, Ibrahim F, Amiri O.	Sci Rep	10.1038/s41598-025-99238-8	2025
Metabolism	A multivalent adsorption apparatus explains the broad host range of phage phi92: a comprehensive genomic and structural analysis.	Schwarzer D, Buettner FF, Browning C, Nazarov S, Rabsch W, Bethe A, Oberbeck A, Bowman VD, Stummeyer K, Muhlenhoff M, Leiman PG, Gerardy-Schahn R.	J Virol	10.1128/jvi.00801-12	2012
Metabolism	Bdellovibrio bacteriovorus strains produce a novel major outer membrane protein during predacious growth in the periplasm of prey bacteria.	Beck S, Schwudke D, Strauch E, Appel B, Linscheid M.	J Bacteriol	10.1128/jb.186.9.2766-2773.2004	2004
	Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling.	Schmalenberger A, Schwieger F, Tebbe CC.	Appl Environ Microbiol	10.1128/aem.67.8.3557-3563.2001	2001
Metabolism	Role of the Tat ransport system in nitrous oxide reductase translocation and cytochrome cd1 biosynthesis in Pseudomonas stutzeri.	Heikkila MP, Honisch U, Wunsch P, Zumft WG.	J Bacteriol	10.1128/jb.183.5.1663-1671.2001	2001
Phylogeny	PCR assays that identify the grapevine dieback fungus Eutypa lata.	Lecomte P, Peros JP, Blancard D, Bastien N, Delye C.	Appl Environ Microbiol	10.1128/aem.66.10.4475-4480.2000	2000
	Antagonistic Toxic Effects of Surfactants Mixtures to Bacteria Pseudomonas putida and Marine Microalgae Phaeodactylum tricornutum.	Rios F, Lechuga M, Lobato-Guarnido I, Fernandez-Serrano M.	Toxics	10.3390/toxics11040344	2023
	Architectural Features and Resistance to Food-Grade Disinfectants in Listeria monocytogenes-Pseudomonas spp. Dual-Species Biofilms.	Rodriguez-Lopez P, Rodriguez-Herrera JJ, Lopez Cabo M.	Front Microbiol	10.3389/fmicb.2022.917964	2022
Phylogeny	Investigating bacterial populations in styrene-degrading biofilters by 16S rDNA tag pyrosequencing.	Portune KJ, Perez MC, Alvarez-Hornos FJ, Gabaldon C.	Appl Microbiol Biotechnol	10.1007/s00253-014-5868-3	2015
	Identification of Aeromonas hydrophila hybridization group 1 by PCR assays.	Cascon A, Anguita J, Hernanz C, Sanchez M, Fernandez M, Naharro G.	Appl Environ Microbiol	10.1128/aem.62.4.1167-1170.1996	1996
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	Advances in silver nanoparticles: a comprehensive review on their potential as antimicrobial agents and their mechanisms of action elucidated by proteomics.	Rodrigues AS, Batista JGS, Rodrigues MAV, Thipe VC, Minarini LAR, Lopes PS, Lugao AB.	Front Microbiol	10.3389/fmicb.2024.1440065	2024
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Phylogeny	New PCR-based open reading frame typing method for easy, rapid, and reliable identification of Acinetobacter baumannii international epidemic clones without performing multilocus sequence typing.	Suzuki M, Hosoba E, Matsui M, Arakawa Y.	J Clin Microbiol	10.1128/jcm.01064-14	2014
	Bacterial transfer from Pristionchus entomophagus nematodes to the invasive ant Myrmica rubra and the potential for colony mortality in coastal Maine.	Ishaq SL, Hotopp A, Silverbrand S, Dumont JE, Michaud A, MacRae JD, Stock SP, Groden E.	iScience	10.1016/j.isci.2021.102663	2021
	Interactions Between Brassicae napus and Pseudomonas putida (Strain ATCC12633) and Characterization of Volatile Organic Compounds Produced by the Bacterium.	Pahlavan Yali M, Hajmalek M	Curr Microbiol	10.1007/s00284-020-02335-2	2021
Metabolism	Production of medium chain length polyhydroxyalkanoate from acetate by engineered Pseudomonas putida KT2440.	Yang S, Li S, Jia X	J Ind Microbiol Biotechnol	10.1007/s10295-019-02159-5	2019
Genetics	Genome Sequence Analysis of Two Pseudomonas putida Strains to Identify a 17-Hydroxylase Putatively Involved in Sparteine Degradation.	Detheridge AP, Griffith GW, Hopper DJ	Curr Microbiol	10.1007/s00284-018-1573-2	2018
Metabolism	Characterization of pyrene degradation and metabolite identification by Basidioascus persicus and mineralization enhancement with bacterial-yeast co-culture.	Kamyabi A, Nouri H, Moghimi H	Ecotoxicol Environ Saf	10.1016/j.ecoenv.2018.07.098	2018
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Metabolism	Alginate-perlite encapsulated Pseudomonas putida A (ATCC 12633) cells: Preparation, characterization and potential use as plant inoculants.	Liffourrena AS, Lucchesi GI	J Biotechnol	10.1016/j.jbiotec.2018.04.019	2018
Metabolism	Degradation of cationic surfactants using immobilized bacteria: Its effect on adsorption to activated sludge.	Bergero MF, Lucchesi GI	J Biotechnol	10.1016/j.jbiotec.2018.03.003	2018
Enzymology	Cloning, Expression and Purification of Pseudomonas putida ATCC12633 Creatinase.	Afshari E, Amini-Bayat Z, Hosseinkhani S, Bakhtiari N	Avicenna J Med Biotechnol		2017
Enzymology	Structure and mechanism of benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633, a member of the Class 3 aldehyde dehydrogenase superfamily.	Zahniser MPD, Prasad S, Kneen MM, Kreinbring CA, Petsko GA, Ringe D, McLeish MJ	Protein Eng Des Sel	10.1093/protein/gzx015	2017
	Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida.	Molina L, Geoffroy VA, Segura A, Udaondo Z, Ramos JL	Front Microbiol	10.3389/fmicb.2016.02100	2016
Phylogeny	Phylogenetic analysis reveals the taxonomically diverse distribution of the Pseudomonas putida group.	Yonezuka K, Shimodaira J, Tabata M, Ohji S, Hosoyama A, Kasai D, Yamazoe A, Fujita N, Ezaki T, Fukuda M	J Gen Appl Microbiol	10.2323/jgam.2016.06.003	2016
Metabolism	A high-throughput microtiter plate assay for the discovery of active and enantioselective amino alcohol-specific transaminases.	Zhang JD, Wu HL, Meng T, Zhang CF, Fan XJ, Chang HH, Wei WL	Anal Biochem	10.1016/j.ab.2016.11.015	2016
Enzymology	Characterization of Four New Distinct omega-Transaminases from Pseudomonas putida NBRC 14164 for Kinetic Resolution of Racemic Amines and Amino Alcohols.	Wu HL, Zhang JD, Zhang CF, Fan XJ, Chang HH, Wei WL	Appl Biochem Biotechnol	10.1007/s12010-016-2263-9	2016
Enzymology	Biosorption of aluminum through the use of non-viable biomass of Pseudomonas putida.	Boeris PS, Agustin Mdel R, Acevedo DF, Lucchesi GI	J Biotechnol	10.1016/j.jbiotec.2016.07.026	2016
Metabolism	Content of cardiolipin of the membrane and sensitivity to cationic surfactants in Pseudomonas putida.	Lopez GA, Heredia RM, Boeris PS, Lucchesi GI	J Appl Microbiol	10.1111/jam.13238	2016
Metabolism	Release of outer membrane vesicles in Pseudomonas putida as a response to stress caused by cationic surfactants.	Marisa Heredia R, Sabrina Boeris P, Sebastian Liffourrena A, Fernanda Bergero M, Alberto Lopez G, Ines Lucchesi G	Microbiology (Reading)	10.1099/mic.0.000265	2016
	On-chip cell lysis by antibacterial non-leaching reusable quaternary ammonium monolithic column.	Aly Saad Aly M, Gauthier M, Yeow J	Biomed Microdevices	10.1007/s10544-015-0025-z	2016
Biotechnology	Engineering Escherichia coli for renewable benzyl alcohol production.	Pugh S, McKenna R, Halloum I, Nielsen DR	Metab Eng Commun	10.1016/j.meteno.2015.06.002	2015
Metabolism	Coordinated response of phospholipids and acyl components of membrane lipids in Pseudomonas putida A (ATCC 12633) under stress caused by cationic surfactants.	Heredia RM, Boeris PS, Biasutti MA, Lopez GA, Paulucci NS, Lucchesi GI	Microbiology (Reading)	10.1099/mic.0.081943-0	2014
Enzymology	Perturbation of the monomer-monomer interfaces of the benzoylformate decarboxylase tetramer.	Andrews FH, Rogers MP, Paul LN, McLeish MJ	Biochemistry	10.1021/bi500081r	2014
Metabolism	Abatement of styrene waste gas emission by biofilter and biotrickling filter: comparison of packing materials and inoculation procedures.	Perez MC, Alvarez-Hornos FJ, Portune K, Gabaldon C	Appl Microbiol Biotechnol	10.1007/s00253-014-5773-9	2014
Enzymology	Identification, cloning and biochemical characterization of Pseudomonas putida A (ATCC 12633) monooxygenase enzyme necessary for the metabolism of tetradecyltrimethylammonium bromide.	Liffourrena AS, Lucchesi GI	Appl Biochem Biotechnol	10.1007/s12010-014-0862-x	2014
Genetics	The Complete Genome Sequence of Pseudomonas putida NBRC 14164T Confirms High Intraspecies Variation.	Ohji S, Yamazoe A, Hosoyama A, Tsuchikane K, Ezaki T, Fujita N	Genome Announc	10.1128/genomeA.00029-14	2014
Metabolism	Degradation of cationic surfactants using Pseudomonas putida A ATCC 12633 immobilized in calcium alginate beads.	Bergero MF, Lucchesi GI	Biodegradation	10.1007/s10532-012-9592-3	2012
Metabolism	The phosphatidylcholine synthase of Pseudomonas putida A ATCC 12633 is responsible for the synthesis of phosphatidylcholine, which acts as a temporary reservoir for Al3+.	Boeris PS, Lucchesi GI	Microbiology (Reading)	10.1099/mic.0.054072-0	2012
Metabolism	Pseudomonas putida A ATCC 12633 oxidizes trimethylamine aerobically via two different pathways.	Liffourrena AS, Salvano MA, Lucchesi GI	Arch Microbiol	10.1007/s00203-010-0577-5	2010
Metabolism	Physiological role of phosphatidylcholine in the Pseudomonas putida A ATCC 12633 response to tetradecyltrimethylammonium bromide and aluminium.	Boeris PS, Liffourrena AS, Salvano MA, Lucchesi GI	Lett Appl Microbiol	10.1111/j.1472-765X.2009.02699.x	2009
Enzymology	Physical, kinetic and spectrophotometric studies of a NAD(P)-dependent benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633.	Yeung CK, Yep A, Kenyon GL, McLeish MJ	Biochim Biophys Acta	10.1016/j.bbapap.2008.04.015	2008
	Utilization of phenylpropanoids by pseudomonas putida soil isolates and its probable taxonomic significance.	Nonaka K, Ohta H, Sato Y, Hosokawa K	Microbes Environ	10.1264/jsme2.me08545	2008
Metabolism	Degradation of alachlor and pyrimethanil by combined photo-Fenton and biological oxidation.	Ballesteros Martin MM, Sanchez Perez JA, Garcia Sanchez JL, Montes de Oca L, Casas Lopez JL, Oller I, Malato Rodriguez S	J Hazard Mater	10.1016/j.jhazmat.2007.11.069	2007
Metabolism	Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida.	Meyer JM, Gruffaz C, Tulkki T, Izard D	Int J Syst Evol Microbiol	10.1099/ijs.0.65233-0	2007
Metabolism	Degradation of tetradecyltrimethylammonium by Pseudomonas putida A ATCC 12633 restricted by accumulation of trimethylamine is alleviated by addition of Al 3+ ions.	Liffourrena AS, Lopez FG, Salvano MA, Domenech CE, Lucchesi GI	J Appl Microbiol	10.1111/j.1365-2672.2007.03591.x	2007
Enzymology	Isolation and characterization of a benzoylformate decarboxylase and a NAD+/NADP+-dependent benzaldehyde dehydrogenase involved in D-phenylglycine metabolism in Pseudomonas stutzeri ST-201.	Saehuan C, Rojanarata T, Wiyakrutta S, McLeish MJ, Meevootisom V	Biochim Biophys Acta	10.1016/j.bbagen.2007.08.007	2007
Metabolism	Combined photo-Fenton and biological oxidation for pesticide degradation: effect of photo-treated intermediates on biodegradation kinetics.	Ballesteros Martin MM, Sanchez Perez JA, Acien Fernandez FG, Casas Lopez JL, Garcia-Ripoll AM, Arques A, Oller I, Malato Rodriguez S	Chemosphere	10.1016/j.chemosphere.2007.08.027	2007
Metabolism	Modification of phospholipid composition in Pseudomonas putida A ATCC 12633 induced by contact with tetradecyltrimethylammonium.	Boeris PS, Domenech CE, Lucchesi GI	J Appl Microbiol	10.1111/j.1365-2672.2007.03346.x	2007
Enzymology	A kinetics study on the biodegradation of synthetic wastewater simulating effluent from an advanced oxidation process using Pseudomonas putida CECT 324.	Martin MM, Perez JA, Fernandez FG, Sanchez JL, Lopez JL, Rodriguez SM	J Hazard Mater	10.1016/j.jhazmat.2007.06.053	2007
Genetics	Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies.	Ballerstedt H, Volkers RJ, Mars AE, Hallsworth JE, dos Santos VA, Puchalka J, van Duuren J, Eggink G, Timmis KN, de Bont JA, Wery J	Appl Microbiol Biotechnol	10.1007/s00253-007-0914-z	2007
Metabolism	Identification of novel benzoylformate decarboxylases by growth selection.	Henning H, Leggewie C, Pohl M, Muller M, Eggert T, Jaeger KE	Appl Environ Microbiol	10.1128/AEM.01541-06	2006
Metabolism	[Mechanism of cyanide and thiocyanate decomposition by an association of Pseudomonas putida and Pseudomonas stutzeri strains].	Grigor'eva NV, Kondrat'eva TF, Krasil'nikova EN, Karavaiko GI	Mikrobiologiia		2006
	Zinc sorption to three gram-negative bacteria: combined titration, modeling, and EXAFS study.	Guine V, Spadini L, Sarret G, Muris M, Delolme C, Gaudet JP, Martins JM	Environ Sci Technol	10.1021/es050981l	2006
Pathogenicity	Synthesis, antibacterial and antifungal activity of some new pyridazinone metal complexes.	Sonmez M, Berber I, Akbas E	Eur J Med Chem	10.1016/j.ejmech.2005.10.003	2005
Enzymology	L: -Stereoselective amino acid amidase with broad substrate specificity from Brevundimonas diminuta: characterization of a new member of the leucine aminopeptidase family.	Komeda H, Hariyama N, Asano Y	Appl Microbiol Biotechnol	10.1007/s00253-005-0068-9	2005
Metabolism	Formation of trans fatty acids is not involved in growth-linked membrane adaptation of Pseudomonas putida.	Hartig C, Loffhagen N, Harms H	Appl Environ Microbiol	10.1128/AEM.71.4.1915-1922.2005	2005
Enzymology	N-methyl-L-amino acid dehydrogenase from Pseudomonas putida. A novel member of an unusual NAD(P)-dependent oxidoreductase superfamily.	Mihara H, Muramatsu H, Kakutani R, Yasuda M, Ueda M, Kurihara T, Esaki N	FEBS J	10.1111/j.1742-4658.2004.04541.x	2005
Metabolism	The putative malate/lactate dehydrogenase from Pseudomonas putida is an NADPH-dependent delta1-piperideine-2-carboxylate/delta1-pyrroline-2-carboxylate reductase involved in the catabolism of D-lysine and D-proline.	Muramatsu H, Mihara H, Kakutani R, Yasuda M, Ueda M, Kurihara T, Esaki N	J Biol Chem	10.1074/jbc.M411918200	2004
Stress	Pseudomonas putida NCTC 10936 balances membrane fluidity in response to physical and chemical stress by changing the saturation degree and the trans/cis ratio of fatty acids.	Loffhagen N, Hartig C, Babel W	Biosci Biotechnol Biochem	10.1271/bbb.68.317	2004
Enzymology	Identification and characterization of a mandelamide hydrolase and an NAD(P)+-dependent benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633.	McLeish MJ, Kneen MM, Gopalakrishna KN, Koo CW, Babbitt PC, Gerlt JA, Kenyon GL	J Bacteriol	10.1128/JB.185.8.2451-2456.2003	2003
Metabolism	Suitability of the trans/cis ratio of unsaturated fatty acids in Pseudomonas putida NCTC 10936 as an indicator of the acute toxicity of chemicals.	Loffhagen N, Hartig C, Babel W	Ecotoxicol Environ Saf	10.1006/eesa.2001.2089	2001
Metabolism	Isolation and characterization of a Pseudomonas putida strain able to grow with trimethyl-1,2-dihydroxy-propyl-ammonium as sole source of carbon, energy and nitrogen.	Kaech A, Egli T	Syst Appl Microbiol	10.1078/0723-2020-00043	2001
Enzymology	Distribution of amine oxidases and amine dehydrogenases in bacteria grown on primary amines and characterization of the amine oxidase from Klebsiella oxytoca.	Hacisalihoglu A, Jongejan JA, Duine JA	Microbiology (Reading)	10.1099/00221287-143-2-505	1997
Metabolism	A carbon starvation survival gene of Pseudomonas putida is regulated by sigma 54.	Kim Y, Watrud LS, Matin A	J Bacteriol	10.1128/jb.177.7.1850-1859.1995	1995
Metabolism	Discontinuities in the evolution of Pseudomonas putida cat genes.	Houghton JE, Brown TM, Appel AJ, Hughes EJ, Ornston LN	J Bacteriol	10.1128/jb.177.2.401-412.1995	1995
Enzymology	A revised map location for the histidine utilization genes in Pseudomonas putida.	King RS, Sechrist LL, Phillips AT	J Basic Microbiol	10.1002/jobm.3620340408	1994
Enzymology	A novel structural basis for membrane association of a protein: construction of a chimeric soluble mutant of (S)-mandelate dehydrogenase from Pseudomonas putida.	Mitra B, Gerlt JA, Babbitt PC, Koo CW, Kenyon GL, Joseph D, Petsko GA	Biochemistry	10.1021/bi00211a003	1993
Enzymology	Purification and Characterization of an l-Aminopeptidase from Pseudomonas putida ATCC 12633.	Hermes HF, Sonke T, Peters PJ, van Balken JA, Kamphuis J, Dijkhuizen L, Meijer EM	Appl Environ Microbiol	10.1128/aem.59.12.4330-4334.1993	1993
Metabolism	Energy conservation by pyrroloquinoline quinol-linked xylose oxidation in Pseudomonas putida NCTC 10936 during carbon-limited growth in chemostat culture.	Hardy GP, Teixeira de Mattos MJ, Neijssel OM	FEMS Microbiol Lett	10.1111/j.1574-6968.1993.tb06012.x	1993
	Factors affecting 2-hydroxypropiophenone formation by benzoylformate decarboxylase from Pseudomonas putida.	Wilcocks R, Ward OP	Biotechnol Bioeng	10.1002/bit.260391010	1992
Enzymology	Mandelate pathway of Pseudomonas putida: sequence relationships involving mandelate racemase, (S)-mandelate dehydrogenase, and benzoylformate decarboxylase and expression of benzoylformate decarboxylase in Escherichia coli.	Tsou AY, Ransom SC, Gerlt JA, Buechter DD, Babbitt PC, Kenyon GL	Biochemistry	10.1021/bi00494a015	1990
Enzymology	Purification, characterization, and structure of pseudobactin 589 A, a siderophore from a plant growth promoting Pseudomonas.	Persmark M, Frejd T, Mattiasson B	Biochemistry	10.1021/bi00483a026	1990
Genetics	Sequence analysis of the hutH gene encoding histidine ammonia-lyase in Pseudomonas putida.	Consevage MW, Phillips AT	J Bacteriol	10.1128/jb.172.5.2224-2229.1990	1990
Enzymology	Selection and characterization of a mutant of the cloned gene for mandelate racemase that confers resistance to an affinity label by greatly enhanced production of enzyme.	Tsou AY, Ransom SC, Gerlt JA, Powers VM, Kenyon GL	Biochemistry	10.1021/bi00429a008	1989
Metabolism	Specificity of pyoverdine-mediated iron uptake among fluorescent Pseudomonas strains.	Hohnadel D, Meyer JM	J Bacteriol	10.1128/jb.170.10.4865-4873.1988	1988
Enzymology	Cloning, DNA sequence analysis, and expression in Escherichia coli of the gene for mandelate racemase from Pseudomonas putida.	Ransom SC, Gerlt JA, Powers VM, Kenyon GL	Biochemistry	10.1021/bi00402a006	1988
	Interaction of Pseudomonas putida ATCC 12633 and Bacteriophage gh-1 in Berea Sandstone Rock.	Chang PL, Yen TF	Appl Environ Microbiol	10.1128/aem.50.6.1545-1547.1985	1985
	Acetate inhibition of Pseudomonas putida.	Fieschko J, Humphrey AE	Biotechnol Bioeng	10.1002/bit.260270913	1985
Enzymology	Presence and quantity of dehydroalanine in histidine ammonia-lyase from Pseudomonas putida.	Consevage MW, Phillips AT	Biochemistry	10.1021/bi00323a010	1985
Metabolism	The effect of a non-metabolizable analog on mandelate catabolism in Pseudomonas putida.	Hegeman GD, Root RT	Arch Microbiol	10.1007/BF00416964	1976
Stress	Dissolved iron released from nanoscale zero-valent iron (nZVI) activates the defense system in bacterium Pseudomonas putida, leading to high tolerance to oxidative stress.	Yeap CSY, Nguyen NHA, Spanek R, Too CC, Benes V, Provaznik J, Cernik M, Sevcu A	J Hazard Mater	10.1016/j.jhazmat.2022.129627	2022
	Pseudomonas coronafaciens sp. nov., a new phytobacterial species diverse from Pseudomonas syringae.	Dutta B, Gitaitis R, Agarwal G, Coutinho T, Langston D.	PLoS One	10.1371/journal.pone.0208271	2018
Phylogeny	Pseudomonas fortuita sp. nov., isolated from the endosphere of a wild yam.	Carlier A, Beaumel M, Moreau S, Acar T, Sana TG, Cnockaert M, Vandamme P.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006395	2024
	Bactericidal Effect of Pseudomonas oryziphila sp. nov., a Novel Pseudomonas Species Against Xanthomonas oryzae Reduces Disease Severity of Bacterial Leaf Streak of Rice.	Yang R, Li S, Li Y, Yan Y, Fang Y, Zou L, Chen G.	Front Microbiol	10.3389/fmicb.2021.759536	2021
	Pseudomonas palmensis sp. nov., a Novel Bacterium Isolated From Nicotiana glauca Microbiome: Draft Genome Analysis and Biological Potential for Agriculture.	Gutierrez-Albanchez E, Garcia-Villaraco A, Lucas JA, Horche I, Ramos-Solano B, Gutierrez-Manero FJ.	Front Microbiol	10.3389/fmicb.2021.672751	2021
Phylogeny	Description of Immundisolibacter cernigliae gen. nov., sp. nov., a high-molecular-weight polycyclic aromatic hydrocarbon-degrading bacterium within the class Gammaproteobacteria, and proposal of Immundisolibacterales ord. nov. and Immundisolibacteraceae fam. nov.	Corteselli EM, Aitken MD, Singleton DR.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001714	2017
Phylogeny	Pseudomonas hutmensis sp. nov., a New Fluorescent Member of Pseudomonas putida Group.	Xiang W, Chen S, Tian D, Huang C, Gao T	Curr Microbiol	10.1007/s00284-019-01701-z	2019
Phylogeny	Pseudomonas wadenswilerensis sp. nov. and Pseudomonas reidholzensis sp. nov., two novel species within the Pseudomonas putida group isolated from forest soil.	Frasson D, Opoku M, Picozzi T, Torossi T, Balada S, Smits THM, Hilber U	Int J Syst Evol Microbiol	10.1099/ijsem.0.002035	2017
Phylogeny	Pseudomonas hunanensis sp. nov., isolated from soil subjected to long-term manganese pollution.	Gao J, Li BY, Wang HH, Liu ZQ	Curr Microbiol	10.1007/s00284-014-0545-4	2014
Phylogeny	Pseudomonas moraviensis sp. nov. and Pseudomonas vranovensis sp. nov., soil bacteria isolated on nitroaromatic compounds, and emended description of Pseudomonas asplenii.	Tvrzova L, Schumann P, Sproer C, Sedlacek I, Pacova Z, Sedo O, Zdrahal Z, Steffen M, Lang E	Int J Syst Evol Microbiol	10.1099/ijs.0.63988-0	2006

References

#27	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 291
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#22942	J. M. YOUNG: Nomenclatural Status of Pseudomonas barkeri (Berridge 1924) Dowson 1943 and Pseudomonas washingtoniae (Pine 1943) Elliott 1951. IJSEM 27: 300 - 303 1977 ( DOI 10.1099/00207713-27-3-300 )
#41850	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122071	Collection of Institut Pasteur ; Curators of the CIP; CIP 52.191
#124042	Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas putida (DSM 291, ATCC 12633, DSM 50202)

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