Name: Pseudomonas putida 90
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12871

Type strain:

Species: Pseudomonas putida

Strain Designation: 90, A 3.12

Culture col. no.: DSM 291, ATCC 12633, DSM 50202, ICPB 2963, NCTC 10936, WDCM 00117, JCM 13063, ATCC 23467, BCRC 10459, CCM 7156, CCUG 12690, CCUG 2091, CECT 324, CFBP 2066, CIP 52.191, DSM 50906, HAMBI 7, HUT 8100, IAM 1236, ICMP 2758, IFO 14164, JCM 3697, KCTC 1644, KCTC 1751, LMG 2257, NBRC 14164, NCCB 68020, NCCB 72006, NCIMB 13936, NCIMB 9494, NCIMB 9528, VKM B-1301, VKM B-2187, VTT E-92005

Strain history: CIP <- 1952, F. Jacob, Inst. Pasteur, Paris, France: strain PF 15, Pseudomonas fluorescens <- R.Y. Stanier, Inst. Pasteur, Paris, France: strain A 3.12 (= strain 90)

NCBI tax ID(s): 1211579 (strain), 303 (species)

SI-ID 4217

LMG 2257, ATCC 12633, ATCC 23467, CCUG 12690, CCUG 2091, CECT 324, DSM 291, IAM 1236, ICMP 2758, IFO 14164, JCM 3697, NCIB 9494, NCIB 9528, NCTC 10936, PDDCC 2758, NCIMB 9494, NCIMB9528, HUT 8100, VKM B-1301, CIP 52.191, LMD 68.20, LMD 72.6, CCRC 10459, CFBP 2066, VTT E-92005, KCTC 1644, KCTC 1751, CCM 7156, NCCB 68020, NCCB 72006, NBRC 14164, HAMBI 7, NCAIM B.01634, BCRC 10459, CCT 2357, IAM 1235, ICMP 3510, NCIMB 13936, NCIMB 30162, JCM 13063, NCAIM B.01157, NCAIM B.01444, NCAIM B.01445, NCAIM B.01447, CNCTC 5802, JCM 20120, VKM B-2187, DSM 50202, DSM 50906

Special Collections

Pseudomonas phage Phi Ppu-W4 Pseudomonas phage Phi Ppu-W6 Pseudomonas phage Phi Ppu-W7 Pseudomonas phage Phi Ppu-W11

Other strains from Pseudomonas putida

Section

Pseudomonas putida 90 is an obligate aerobe, Gram-negative, rod-shaped human pathogen that was isolated from lactate enrichment.

Gram-negative
rod-shaped
human pathogen
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas putida**
	Full Scientific Name (LPSN)	Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)

	Synonym	Arthrobacter siderocapsulatus
	Synonym	"Bacillus* putidus"*

Information on morphological and physiological properties Morphology

[Ref.: #22942]	Gram stain	negative
[Ref.: #122071]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99

[Ref.: #22942]	Cell shape	rod-shaped
[Ref.: #122071]	Cell shape	rod-shaped

[Ref.: #22942]	Flagellum arrangement	polar

[Ref.: #122071]	Motility	yes

[Ref.: #122071]	Pigment production	no
[Ref.: #122071]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41850]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41850]

Culture medium growth

[Ref.: #41850]

Culture medium composition

expand / minimize

[Ref.: #27]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #27]

Culture medium growth

[Ref.: #27]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #27]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #27]

Culture medium growth

[Ref.: #27]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #27]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #27]

Culture medium growth

[Ref.: #27]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #27]

Culture medium

PSEUDOMONAS AGAR F (DSMZ Medium 907)

[Ref.: #27]

Culture medium growth

[Ref.: #27]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #27]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #27]

Culture medium growth

[Ref.: #27]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122071]

Culture medium

CIP Medium 72

[Ref.: #122071]

Culture medium growth

[Ref.: #122071]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #27]		growth	25 °C
[Ref.: #27]		growth	26 °C
[Ref.: #27]		growth	28 °C
[Ref.: #27]		growth	37 °C
[Ref.: #22942]	no	growth	41 °C
[Ref.: #41850]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #122071]		growth	25-41 °C
[Ref.: #122071]	no	growth	10 °C
[Ref.: #122071]	no	growth	5 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122071]	Oxygen tolerance	obligate aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %93.405

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #27]

Name of produced compound

siderophore

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #122071]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

Production of Acetic acid from ethanol

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22942]	2-dehydro-D-gluconate ChEBI	+	growth
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #22942]	beta-alanine ChEBI	+	growth
[Ref.: #122071]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #122071]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #22942]	gelatin ChEBI	-	hydrolysis
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #22942]	glycine ChEBI	+	growth
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #22942]	myo-inositol ChEBI	+	growth
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #22942]	nitrate ChEBI	+/-	reduction
[Ref.: #122071]	nitrate ChEBI	-	reduction
[Ref.: #122071]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #122071]	nitrite ChEBI	-	reduction
[Ref.: #122071]	phenol ChEBI	+	degradation
[Ref.: #22942]	trehalose ChEBI	+	growth
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #22942]	valine ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122071]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #67770]	acetate ChEBI	yes
[Ref.: #122071]	indole ChEBI	no
[Ref.: #68369]	indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122071]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122071]	amylase	-
[Ref.: #22942]	arginine dihydrolase	+	3.5.3.6
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #122071]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122071]	caseinase	-	3.4.21.50
[Ref.: #122071]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #22942]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #122071]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #22942]	gelatinase	-
[Ref.: #122071]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #122071]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122071]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122071]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122071]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122071]	oxidase	+
[Ref.: #122071]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122071]	tryptophan deaminase	-
[Ref.: #122071]	tween esterase	-
[Ref.: #122071]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #27]	27707	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	-	+	+	+	+
[Ref.: #27]	25483	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	-	+	+	+	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122071]	2970	not determinedn.d.	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	+	+	+	+	-	+	+	+	+	-	-	-	+	+	+	+	+	-	-	+	-	-	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122071]	12635	-	-	-	+	-	+	-	-	+	-	+	+	+	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #27]	Sample type/isolated from	lactate enrichment

[Ref.: #122071]	Sample type/isolated from	Environment, Soil
* marker position based on {}

Isolation sources categories

#Engineered	-	-
#Engineered	#Laboratory	#Lab enrichment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z76667 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	421
Soil Samples	444
Animal Samples	802
Plant Samples	305
Total Samples	1972

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #27]	Pathogenicity (human)	yes
[Ref.: #27]	Pathogenicity (animal)	yes
[Ref.: #27]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122071]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #27]	P.putida 16S rRNA gene	Z76667	1492	GenBank ENA	303 tax ID
[Ref.: #67770]	Pseudomonas putida JCM 13063 gene for 16S rRNA, partial sequence	LC507960	1459	GenBank ENA	303 tax ID
[Ref.: #124043]	Pseudomonas putida strain ATCC 12633 16S ribosomal RNA gene, partial sequence.	OQ683798	1492	GenBank ENA	303 tax ID	*
[Ref.: #124043]	Pseudomonas putida gene for 16S rRNA, partial sequence, strain: NBRC 14164.	AB680572	1462	GenBank ENA	303 tax ID	*
[Ref.: #20218]	Pseudomonas putida strain ATCC 12633 16S ribosomal RNA gene, partial sequence	JN630890	791	GenBank ENA	303 tax ID	*
[Ref.: #20218]	Pseudomonas putida partial 16S rRNA gene, type strain Biotype AT	AJ308313	1371	GenBank ENA	303 tax ID	*
[Ref.: #124043]	Pseudomonas putida strain BCRC 10459 16S-23S ribosomal RNA intergenic spacer, complete sequence.	EU014557	508	GenBank ENA	303 tax ID	*
[Ref.: #124043]	Pseudomonas putida strain BCRC 10459 16S-23S ribosomal RNA intergenic spacer, complete sequence.	EU014558	471	GenBank ENA	303 tax ID	*
[Ref.: #124043]	Pseudomonas putida strain BCRC 10459 16S-23S ribosomal RNA intergenic spacer, complete sequence.	EU014559	317	GenBank ENA	303 tax ID	*
[Ref.: #20218]	Pseudomonas putida strain ATCC 12633 16S ribosomal RNA gene, partial sequence	AF094736	1492	GenBank ENA	303 tax ID	*
[Ref.: #124043]	Pseudomonas putida (strain IFO 14164 (ATCC 12633)) gene for 16S ribosomal RNA, partial sequence.	D37923	1329	GenBank ENA	303 tax ID	*
[Ref.: #124043]	Pseudomonas putida 16S rRNA gene, complete sequence.	D84020	1527	GenBank ENA	303 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas putida NCTC10936	GCA_900455645	contig	GenBank ENA	303 tax ID
[Ref.: #66792]	Pseudomonas putida NBRC 14164	GCA_000412675	complete	GenBank ENA	1211579 tax ID	*
[Ref.: #66792]	Pseudomonas putida NBRC 14164	1211579.3	complete	PATRIC	1211579 tax ID	*
[Ref.: #66792]	Pseudomonas putida strain IPO3752	303.707	wgs	PATRIC	303 tax ID	*
[Ref.: #66792]	Pseudomonas putida strain NCTC10936	303.534	wgs	PATRIC	303 tax ID	*
[Ref.: #66792]	Pseudomonas putida NBRC 14164	2554235365	complete	JGI IMG/M	1211579 tax ID	*

[Ref.: #27]

GC-content

62.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas putida NBRC 14164 NBRC 14164 NCBI: GCA_000412675.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas putida NBRC 14164 NBRC 14164 NCBI: GCA_000412675.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	99.099	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	93.405	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.531	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.986	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	89.035	no

Availability in culture collections External links

[Ref.: #27]

Culture collection no.

DSM 291, ATCC 12633, DSM 50202, ICPB 2963, NCTC 10936, WDCM 00117, JCM 13063, ATCC 23467, BCRC 10459, CCM 7156, CCUG 12690, CCUG 2091, CECT 324, CFBP 2066, CIP 52.191, DSM 50906, HAMBI 7, HUT 8100, IAM 1236, ICMP 2758, IFO 14164, JCM 3697, KCTC 1644, KCTC 1751, LMG 2257, NBRC 14164, NCCB 68020, NCCB 72006, NCIMB 13936, NCIMB 9494, NCIMB 9528, VKM B-1301, VKM B-2187, VTT E-92005

[Ref.: #82083]

SI-ID 4217


[Ref.: #124042]	Pseudomonas phage Phi Ppu-W4
[Ref.: #124042]	Pseudomonas phage Phi Ppu-W6
[Ref.: #124042]	Pseudomonas phage Phi Ppu-W7
[Ref.: #124042]	Pseudomonas phage Phi Ppu-W11

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas hutmensis sp. nov., a New Fluorescent Member of Pseudomonas putida Group.	Xiang W, Chen S, Tian D, Huang C, Gao T	Curr Microbiol	10.1007/s00284-019-01701-z	2019	*
Metabolism	Production of medium chain length polyhydroxyalkanoate from acetate by engineered Pseudomonas putida KT2440.	Yang S, Li S, Jia X	J Ind Microbiol Biotechnol	10.1007/s10295-019-02159-5	2019	*
Genetics	Genome Sequence Analysis of Two Pseudomonas putida Strains to Identify a 17-Hydroxylase Putatively Involved in Sparteine Degradation.	Detheridge AP, Griffith GW, Hopper DJ	Curr Microbiol	10.1007/s00284-018-1573-2	2018	*
Metabolism	Characterization of pyrene degradation and metabolite identification by Basidioascus persicus and mineralization enhancement with bacterial-yeast co-culture.	Kamyabi A, Nouri H, Moghimi H	Ecotoxicol Environ Saf	10.1016/j.ecoenv.2018.07.098	2018	*
Metabolism	Alginate-perlite encapsulated Pseudomonas putida A (ATCC 12633) cells: Preparation, characterization and potential use as plant inoculants.	Liffourrena AS, Lucchesi GI	J Biotechnol	10.1016/j.jbiotec.2018.04.019	2018	*
Metabolism	Degradation of cationic surfactants using immobilized bacteria: Its effect on adsorption to activated sludge.	Bergero MF, Lucchesi GI	J Biotechnol	10.1016/j.jbiotec.2018.03.003	2018	*
Enzymology	Cloning, Expression and Purification of Pseudomonas putida ATCC12633 Creatinase.	Afshari E, Amini-Bayat Z, Hosseinkhani S, Bakhtiari N	Avicenna J Med Biotechnol		2017	*
Phylogeny	Pseudomonas wadenswilerensis sp. nov. and Pseudomonas reidholzensis sp. nov., two novel species within the Pseudomonas putida group isolated from forest soil.	Frasson D, Opoku M, Picozzi T, Torossi T, Balada S, Smits THM, Hilber U	Int J Syst Evol Microbiol	10.1099/ijsem.0.002035	2017	*
Enzymology	Structure and mechanism of benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633, a member of the Class 3 aldehyde dehydrogenase superfamily.	Zahniser MPD, Prasad S, Kneen MM, Kreinbring CA, Petsko GA, Ringe D, McLeish MJ	Protein Eng Des Sel	10.1093/protein/gzx015	2017	*
Phylogeny	Phylogenetic analysis reveals the taxonomically diverse distribution of the Pseudomonas putida group.	Yonezuka K, Shimodaira J, Tabata M, Ohji S, Hosoyama A, Kasai D, Yamazoe A, Fujita N, Ezaki T, Fukuda M	J Gen Appl Microbiol	10.2323/jgam.2016.06.003	2016	*
Metabolism	A high-throughput microtiter plate assay for the discovery of active and enantioselective amino alcohol-specific transaminases.	Zhang JD, Wu HL, Meng T, Zhang CF, Fan XJ, Chang HH, Wei WL	Anal Biochem	10.1016/j.ab.2016.11.015	2016	*
Enzymology	Characterization of Four New Distinct omega-Transaminases from Pseudomonas putida NBRC 14164 for Kinetic Resolution of Racemic Amines and Amino Alcohols.	Wu HL, Zhang JD, Zhang CF, Fan XJ, Chang HH, Wei WL	Appl Biochem Biotechnol	10.1007/s12010-016-2263-9	2016	*
Enzymology	Biosorption of aluminum through the use of non-viable biomass of Pseudomonas putida.	Boeris PS, Agustin Mdel R, Acevedo DF, Lucchesi GI	J Biotechnol	10.1016/j.jbiotec.2016.07.026	2016	*
Metabolism	Content of cardiolipin of the membrane and sensitivity to cationic surfactants in Pseudomonas putida.	Lopez GA, Heredia RM, Boeris PS, Lucchesi GI	J Appl Microbiol	10.1111/jam.13238	2016	*
Metabolism	Release of outer membrane vesicles in Pseudomonas putida as a response to stress caused by cationic surfactants.	Marisa Heredia R, Sabrina Boeris P, Sebastian Liffourrena A, Fernanda Bergero M, Alberto Lopez G, Ines Lucchesi G	Microbiology (Reading)	10.1099/mic.0.000265	2016	*
Biotechnology	Engineering Escherichia coli for renewable benzyl alcohol production.	Pugh S, McKenna R, Halloum I, Nielsen DR	Metab Eng Commun	10.1016/j.meteno.2015.06.002	2015	*
Metabolism	Coordinated response of phospholipids and acyl components of membrane lipids in Pseudomonas putida A (ATCC 12633) under stress caused by cationic surfactants.	Heredia RM, Boeris PS, Biasutti MA, Lopez GA, Paulucci NS, Lucchesi GI	Microbiology (Reading)	10.1099/mic.0.081943-0	2014	*
Enzymology	Perturbation of the monomer-monomer interfaces of the benzoylformate decarboxylase tetramer.	Andrews FH, Rogers MP, Paul LN, McLeish MJ	Biochemistry	10.1021/bi500081r	2014	*
Metabolism	Abatement of styrene waste gas emission by biofilter and biotrickling filter: comparison of packing materials and inoculation procedures.	Perez MC, Alvarez-Hornos FJ, Portune K, Gabaldon C	Appl Microbiol Biotechnol	10.1007/s00253-014-5773-9	2014	*
Enzymology	Identification, cloning and biochemical characterization of Pseudomonas putida A (ATCC 12633) monooxygenase enzyme necessary for the metabolism of tetradecyltrimethylammonium bromide.	Liffourrena AS, Lucchesi GI	Appl Biochem Biotechnol	10.1007/s12010-014-0862-x	2014	*
Phylogeny	Pseudomonas hunanensis sp. nov., isolated from soil subjected to long-term manganese pollution.	Gao J, Li BY, Wang HH, Liu ZQ	Curr Microbiol	10.1007/s00284-014-0545-4	2014	*
Genetics	The Complete Genome Sequence of Pseudomonas putida NBRC 14164T Confirms High Intraspecies Variation.	Ohji S, Yamazoe A, Hosoyama A, Tsuchikane K, Ezaki T, Fujita N	Genome Announc	10.1128/genomeA.00029-14	2014	*
Metabolism	Degradation of cationic surfactants using Pseudomonas putida A ATCC 12633 immobilized in calcium alginate beads.	Bergero MF, Lucchesi GI	Biodegradation	10.1007/s10532-012-9592-3	2012	*
Metabolism	The phosphatidylcholine synthase of Pseudomonas putida A ATCC 12633 is responsible for the synthesis of phosphatidylcholine, which acts as a temporary reservoir for Al3+.	Boeris PS, Lucchesi GI	Microbiology (Reading)	10.1099/mic.0.054072-0	2012	*
Metabolism	Pseudomonas putida A ATCC 12633 oxidizes trimethylamine aerobically via two different pathways.	Liffourrena AS, Salvano MA, Lucchesi GI	Arch Microbiol	10.1007/s00203-010-0577-5	2010	*
Metabolism	Physiological role of phosphatidylcholine in the Pseudomonas putida A ATCC 12633 response to tetradecyltrimethylammonium bromide and aluminium.	Boeris PS, Liffourrena AS, Salvano MA, Lucchesi GI	Lett Appl Microbiol	10.1111/j.1472-765X.2009.02699.x	2009	*
Enzymology	Physical, kinetic and spectrophotometric studies of a NAD(P)-dependent benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633.	Yeung CK, Yep A, Kenyon GL, McLeish MJ	Biochim Biophys Acta	10.1016/j.bbapap.2008.04.015	2008	*
Metabolism	Degradation of alachlor and pyrimethanil by combined photo-Fenton and biological oxidation.	Ballesteros Martin MM, Sanchez Perez JA, Garcia Sanchez JL, Montes de Oca L, Casas Lopez JL, Oller I, Malato Rodriguez S	J Hazard Mater	10.1016/j.jhazmat.2007.11.069	2007	*
Metabolism	Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida.	Meyer JM, Gruffaz C, Tulkki T, Izard D	Int J Syst Evol Microbiol	10.1099/ijs.0.65233-0	2007	*
Metabolism	Degradation of tetradecyltrimethylammonium by Pseudomonas putida A ATCC 12633 restricted by accumulation of trimethylamine is alleviated by addition of Al 3+ ions.	Liffourrena AS, Lopez FG, Salvano MA, Domenech CE, Lucchesi GI	J Appl Microbiol	10.1111/j.1365-2672.2007.03591.x	2007	*
Enzymology	Isolation and characterization of a benzoylformate decarboxylase and a NAD+/NADP+-dependent benzaldehyde dehydrogenase involved in D-phenylglycine metabolism in Pseudomonas stutzeri ST-201.	Saehuan C, Rojanarata T, Wiyakrutta S, McLeish MJ, Meevootisom V	Biochim Biophys Acta	10.1016/j.bbagen.2007.08.007	2007	*
Metabolism	Combined photo-Fenton and biological oxidation for pesticide degradation: effect of photo-treated intermediates on biodegradation kinetics.	Ballesteros Martin MM, Sanchez Perez JA, Acien Fernandez FG, Casas Lopez JL, Garcia-Ripoll AM, Arques A, Oller I, Malato Rodriguez S	Chemosphere	10.1016/j.chemosphere.2007.08.027	2007	*
Metabolism	Modification of phospholipid composition in Pseudomonas putida A ATCC 12633 induced by contact with tetradecyltrimethylammonium.	Boeris PS, Domenech CE, Lucchesi GI	J Appl Microbiol	10.1111/j.1365-2672.2007.03346.x	2007	*
Enzymology	A kinetics study on the biodegradation of synthetic wastewater simulating effluent from an advanced oxidation process using Pseudomonas putida CECT 324.	Martin MM, Perez JA, Fernandez FG, Sanchez JL, Lopez JL, Rodriguez SM	J Hazard Mater	10.1016/j.jhazmat.2007.06.053	2007	*
Genetics	Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies.	Ballerstedt H, Volkers RJ, Mars AE, Hallsworth JE, dos Santos VA, Puchalka J, van Duuren J, Eggink G, Timmis KN, de Bont JA, Wery J	Appl Microbiol Biotechnol	10.1007/s00253-007-0914-z	2007	*
Phylogeny	Pseudomonas moraviensis sp. nov. and Pseudomonas vranovensis sp. nov., soil bacteria isolated on nitroaromatic compounds, and emended description of Pseudomonas asplenii.	Tvrzova L, Schumann P, Sproer C, Sedlacek I, Pacova Z, Sedo O, Zdrahal Z, Steffen M, Lang E	Int J Syst Evol Microbiol	10.1099/ijs.0.63988-0	2006	*
Metabolism	Identification of novel benzoylformate decarboxylases by growth selection.	Henning H, Leggewie C, Pohl M, Muller M, Eggert T, Jaeger KE	Appl Environ Microbiol	10.1128/AEM.01541-06	2006	*
Metabolism	[Mechanism of cyanide and thiocyanate decomposition by an association of Pseudomonas putida and Pseudomonas stutzeri strains].	Grigor'eva NV, Kondrat'eva TF, Krasil'nikova EN, Karavaiko GI	Mikrobiologiia		2006	*
Pathogenicity	Synthesis, antibacterial and antifungal activity of some new pyridazinone metal complexes.	Sonmez M, Berber I, Akbas E	Eur J Med Chem	10.1016/j.ejmech.2005.10.003	2005	*
Enzymology	L: -Stereoselective amino acid amidase with broad substrate specificity from Brevundimonas diminuta: characterization of a new member of the leucine aminopeptidase family.	Komeda H, Hariyama N, Asano Y	Appl Microbiol Biotechnol	10.1007/s00253-005-0068-9	2005	*
Metabolism	Formation of trans fatty acids is not involved in growth-linked membrane adaptation of Pseudomonas putida.	Hartig C, Loffhagen N, Harms H	Appl Environ Microbiol	10.1128/AEM.71.4.1915-1922.2005	2005	*
Enzymology	N-methyl-L-amino acid dehydrogenase from Pseudomonas putida. A novel member of an unusual NAD(P)-dependent oxidoreductase superfamily.	Mihara H, Muramatsu H, Kakutani R, Yasuda M, Ueda M, Kurihara T, Esaki N	FEBS J	10.1111/j.1742-4658.2004.04541.x	2005	*
Metabolism	The putative malate/lactate dehydrogenase from Pseudomonas putida is an NADPH-dependent delta1-piperideine-2-carboxylate/delta1-pyrroline-2-carboxylate reductase involved in the catabolism of D-lysine and D-proline.	Muramatsu H, Mihara H, Kakutani R, Yasuda M, Ueda M, Kurihara T, Esaki N	J Biol Chem	10.1074/jbc.M411918200	2004	*
Stress	Pseudomonas putida NCTC 10936 balances membrane fluidity in response to physical and chemical stress by changing the saturation degree and the trans/cis ratio of fatty acids.	Loffhagen N, Hartig C, Babel W	Biosci Biotechnol Biochem	10.1271/bbb.68.317	2004	*
Enzymology	Identification and characterization of a mandelamide hydrolase and an NAD(P)+-dependent benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633.	McLeish MJ, Kneen MM, Gopalakrishna KN, Koo CW, Babbitt PC, Gerlt JA, Kenyon GL	J Bacteriol	10.1128/JB.185.8.2451-2456.2003	2003	*
Metabolism	Suitability of the trans/cis ratio of unsaturated fatty acids in Pseudomonas putida NCTC 10936 as an indicator of the acute toxicity of chemicals.	Loffhagen N, Hartig C, Babel W	Ecotoxicol Environ Saf	10.1006/eesa.2001.2089	2001	*
Metabolism	Isolation and characterization of a Pseudomonas putida strain able to grow with trimethyl-1,2-dihydroxy-propyl-ammonium as sole source of carbon, energy and nitrogen.	Kaech A, Egli T	Syst Appl Microbiol	10.1078/0723-2020-00043	2001	*
Enzymology	Distribution of amine oxidases and amine dehydrogenases in bacteria grown on primary amines and characterization of the amine oxidase from Klebsiella oxytoca.	Hacisalihoglu A, Jongejan JA, Duine JA	Microbiology (Reading)	10.1099/00221287-143-2-505	1997	*
Metabolism	A carbon starvation survival gene of Pseudomonas putida is regulated by sigma 54.	Kim Y, Watrud LS, Matin A	J Bacteriol	10.1128/jb.177.7.1850-1859.1995	1995	*
Metabolism	Discontinuities in the evolution of Pseudomonas putida cat genes.	Houghton JE, Brown TM, Appel AJ, Hughes EJ, Ornston LN	J Bacteriol	10.1128/jb.177.2.401-412.1995	1995	*
Enzymology	A revised map location for the histidine utilization genes in Pseudomonas putida.	King RS, Sechrist LL, Phillips AT	J Basic Microbiol	10.1002/jobm.3620340408	1994	*
Enzymology	A novel structural basis for membrane association of a protein: construction of a chimeric soluble mutant of (S)-mandelate dehydrogenase from Pseudomonas putida.	Mitra B, Gerlt JA, Babbitt PC, Koo CW, Kenyon GL, Joseph D, Petsko GA	Biochemistry	10.1021/bi00211a003	1993	*
Enzymology	Purification and Characterization of an l-Aminopeptidase from Pseudomonas putida ATCC 12633.	Hermes HF, Sonke T, Peters PJ, van Balken JA, Kamphuis J, Dijkhuizen L, Meijer EM	Appl Environ Microbiol	10.1128/aem.59.12.4330-4334.1993	1993	*
Metabolism	Energy conservation by pyrroloquinoline quinol-linked xylose oxidation in Pseudomonas putida NCTC 10936 during carbon-limited growth in chemostat culture.	Hardy GP, Teixeira de Mattos MJ, Neijssel OM	FEMS Microbiol Lett	10.1111/j.1574-6968.1993.tb06012.x	1993	*
Enzymology	Mandelate pathway of Pseudomonas putida: sequence relationships involving mandelate racemase, (S)-mandelate dehydrogenase, and benzoylformate decarboxylase and expression of benzoylformate decarboxylase in Escherichia coli.	Tsou AY, Ransom SC, Gerlt JA, Buechter DD, Babbitt PC, Kenyon GL	Biochemistry	10.1021/bi00494a015	1990	*
Enzymology	Purification, characterization, and structure of pseudobactin 589 A, a siderophore from a plant growth promoting Pseudomonas.	Persmark M, Frejd T, Mattiasson B	Biochemistry	10.1021/bi00483a026	1990	*
Genetics	Sequence analysis of the hutH gene encoding histidine ammonia-lyase in Pseudomonas putida.	Consevage MW, Phillips AT	J Bacteriol	10.1128/jb.172.5.2224-2229.1990	1990	*
Enzymology	Selection and characterization of a mutant of the cloned gene for mandelate racemase that confers resistance to an affinity label by greatly enhanced production of enzyme.	Tsou AY, Ransom SC, Gerlt JA, Powers VM, Kenyon GL	Biochemistry	10.1021/bi00429a008	1989	*
Metabolism	Specificity of pyoverdine-mediated iron uptake among fluorescent Pseudomonas strains.	Hohnadel D, Meyer JM	J Bacteriol	10.1128/jb.170.10.4865-4873.1988	1988	*
Enzymology	Cloning, DNA sequence analysis, and expression in Escherichia coli of the gene for mandelate racemase from Pseudomonas putida.	Ransom SC, Gerlt JA, Powers VM, Kenyon GL	Biochemistry	10.1021/bi00402a006	1988	*
Enzymology	Presence and quantity of dehydroalanine in histidine ammonia-lyase from Pseudomonas putida.	Consevage MW, Phillips AT	Biochemistry	10.1021/bi00323a010	1985	*
Metabolism	The effect of a non-metabolizable analog on mandelate catabolism in Pseudomonas putida.	Hegeman GD, Root RT	Arch Microbiol	10.1007/BF00416964	1976	*
Stress	Dissolved iron released from nanoscale zero-valent iron (nZVI) activates the defense system in bacterium Pseudomonas putida, leading to high tolerance to oxidative stress.	Yeap CSY, Nguyen NHA, Spanek R, Too CC, Benes V, Provaznik J, Cernik M, Sevcu A	J Hazard Mater	10.1016/j.jhazmat.2022.129627	2022	*
	Interactions Between Brassicae napus and Pseudomonas putida (Strain ATCC12633) and Characterization of Volatile Organic Compounds Produced by the Bacterium.	Pahlavan Yali M, Hajmalek M	Curr Microbiol	10.1007/s00284-020-02335-2	2021	*
	Development of a Pseudomonas putida cell-free protein synthesis platform for rapid screening of gene regulatory elements.	Wang H, Li J, Jewett MC	Synth Biol (Oxf)	10.1093/synbio/ysy003	2018	*
	Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida.	Molina L, Geoffroy VA, Segura A, Udaondo Z, Ramos JL	Front Microbiol	10.3389/fmicb.2016.02100	2016	*
	On-chip cell lysis by antibacterial non-leaching reusable quaternary ammonium monolithic column.	Aly Saad Aly M, Gauthier M, Yeow J	Biomed Microdevices	10.1007/s10544-015-0025-z	2016	*
	Utilization of phenylpropanoids by pseudomonas putida soil isolates and its probable taxonomic significance.	Nonaka K, Ohta H, Sato Y, Hosokawa K	Microbes Environ	10.1264/jsme2.me08545	2008	*
	Zinc sorption to three gram-negative bacteria: combined titration, modeling, and EXAFS study.	Guine V, Spadini L, Sarret G, Muris M, Delolme C, Gaudet JP, Martins JM	Environ Sci Technol	10.1021/es050981l	2006	*
	Factors affecting 2-hydroxypropiophenone formation by benzoylformate decarboxylase from Pseudomonas putida.	Wilcocks R, Ward OP	Biotechnol Bioeng	10.1002/bit.260391010	1992	*
	Interaction of Pseudomonas putida ATCC 12633 and Bacteriophage gh-1 in Berea Sandstone Rock.	Chang PL, Yen TF	Appl Environ Microbiol	10.1128/aem.50.6.1545-1547.1985	1985	*
	Acetate inhibition of Pseudomonas putida.	Fieschko J, Humphrey AE	Biotechnol Bioeng	10.1002/bit.260270913	1985	*

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Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

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Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

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João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

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Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

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Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

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Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4217.1 )

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Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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