Name: Pseudomonas putida DSM 6521
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12901

Type strain:

Species: Pseudomonas putida

Culture col. no.: DSM 6521, ATCC 11172, NCIB 8251, JCM 13061, BCRC 14349, NCAIM B.01522, NCCB 92006, NCIMB 8251

Strain history: K. Komagata <-- R. Hugh 821 <-- ATCC 11172 <-- NCIMB 8251 <-- W. C. Evans.

NCBI tax ID(s): 303 (species)

SI-ID 35334

ATCC 11172, NCIB 8251, DSM 6521, NCIMB 8251, NCCB 92006, LMD 92.6, BCRC 14349, CCRC 14349, NCAIM B.01522, JCM 13061, ATCC 11772

Other strains from Pseudomonas putida

Section

Pseudomonas putida DSM 6521 is a mesophilic human pathogen of the family Pseudomonadaceae.

human pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas putida**
	Full Scientific Name (LPSN)	Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)

	Synonym	"Bacillus* putidus"*
	Synonym	Arthrobacter siderocapsulatus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2713]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #2713]

Culture medium growth

[Ref.: #2713]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2713]

Culture medium composition

expand / minimize

[Ref.: #2713]

Culture medium

MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)

[Ref.: #2713]

Culture medium growth

[Ref.: #2713]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2713]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2713]			growth	26 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #2713]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #2713]	24586	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	-	+	+	+	+
[Ref.: #2713]	22826	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	-	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence LC507958 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	421
Soil Samples	444
Animal Samples	802
Plant Samples	305
Total Samples	1972

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2713]	Pathogenicity (human)	yes
[Ref.: #2713]	Pathogenicity (animal)	yes
[Ref.: #2713]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas putida JCM 13061 gene for 16S rRNA, partial sequence	LC507958	1459	ENA	303 tax ID
[Ref.: #20218]	Pseudomonas putida 16S ribosomal RNA gene, strain: ATCC 11172, partial sequence	D85992	1329	ENA	303 tax ID	*
[Ref.: #20218]	Pseudomonas putida strain ATCC 11172 16S ribosomal RNA gene, partial sequence	AF094745	1476	ENA	303 tax ID	*

Availability in culture collections External links

[Ref.: #2713]

Culture collection no.

DSM 6521, ATCC 11172, NCIB 8251, JCM 13061, BCRC 14349, NCAIM B.01522, NCCB 92006, NCIMB 8251

[Ref.: #82114]

SI-ID 35334

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Identification of novel non-metal haloperoxidases from the marine metagenome.	Gwon HJ, Teruhiko I, Shigeaki H, Baik SH	J Microbiol Biotechnol	10.4014/jmb.1310.10070	2014	*
Metabolism	Degradation of phenol and TCE using suspended and chitosan-bead immobilized Pseudomonas putida.	Chen YM, Lin TF, Huang C, Lin JC, Hsieh FM	J Hazard Mater	10.1016/j.jhazmat.2007.03.030	2007	*
Metabolism	Electrical wiring of Pseudomonas putida and Pseudomonas fluorescens with osmium redox polymers.	Timur S, Haghighi B, Tkac J, Pazarlioglu N, Telefoncu A, Gorton L	Bioelectrochemistry	10.1016/j.bioelechem.2006.08.001	2006	*
Metabolism	Enhanced biodegradation of phenol by a microbial consortium in a solid-liquid two phase partitioning bioreactor.	Prpich GP, Daugulis AJ	Biodegradation	10.1007/s10532-004-2036-y	2005	*
Metabolism	Degradation of xenobiotics in a partitioning bioreactor in which the partitioning phase is a polymer.	Amsden BG, Bochanysz J, Daugulis AJ	Biotechnol Bioeng	10.1002/bit.10804	2003	*
Metabolism	Enhancement of a two-phase partitioning bioreactor system by modification of the microbial catalyst: demonstration of concept.	Vrionis HA, Kropinski AM, Daugulis AJ	Biotechnol Bioeng	10.1002/bit.10313	2002	*
Enzymology	Expanded application of a two-phase partitioning bioreactor through strain development and new feeding strategies.	Vrionis HA, Kropinski AM, Daugulis AJ	Biotechnol Prog	10.1021/bp020295f	2002	*
Enzymology	Identification and characterization of the AgmR regulator of Pseudomonas putida: role in alcohol utilization.	Vrionis HA, Daugulis AJ, Kropinski AM	Appl Microbiol Biotechnol	10.1007/s00253-001-0912-5	2002	*
Metabolism	Biodegradation of phenol at high initial concentrations in two-phase partitioning batch and fed-batch bioreactors.	Collins LD, Daugulis AJ	Biotechnol Bioeng	10.1002/(SICI)1097-0290(19970705)55:1<155::AID-BIT16>3.0.CO;2-L	1997	*
Metabolism	Characterization and optimization of a two-phase partitioning bioreactor for the biodegradation of phenol.	Collins LD, Daugulis AJ	Appl Microbiol Biotechnol	10.1007/s002530051008	1997	*
Metabolism	Application of reverse transcriptase PCR for monitoring expression of the catabolic dmpN gene in a phenol-degrading sequencing batch reactor.	Selvaratnam S, Schoedel BA, McFarland BL, Kulpa CF	Appl Environ Microbiol	10.1128/aem.61.11.3981-3985.1995	1995	*
Metabolism	Degradation of phenol by Pseudomonas putida ATCC 11172 in continuous culture at different ratios of biofilm surface to culture volume.	Molin G, Nilsson I	Appl Environ Microbiol	10.1128/aem.50.4.946-950.1985	1985	*
Metabolism	Effect of carbon dioxide on growth of Pseudomonas putida ATCC 11172 on asparagine, citrate, glucose, and lactate in batch and continuous culture.	Molin G	Can J Microbiol	10.1139/m85-143	1985	*
	Effects of carbon and oxygen limitations and calcium concentrations on biofilm removal processes.	Applegate DH, Bryers JD	Biotechnol Bioeng	10.1002/bit.260370105	1991	*
	Sand administration as an instrument for biofilm control of Pseudomonas putida ATCC 11172 in chemostat cultures.	Molin G, Nilsson I	Biotechnol Bioeng	10.1002/bit.260270114	1985	*
	Utilization of phenylpropanoids by pseudomonas putida soil isolates and its probable taxonomic significance.	Nonaka K, Ohta H, Sato Y, Hosokawa K	Microbes Environ	10.1264/jsme2.me08545	2008	*

References

#2713

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6521

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82114

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35334.1 )

* These data were automatically processed and therefore are not curated

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