Name: Pseudomonas putida DSM 6521
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12901

Type strain:

Species: Pseudomonas putida

Culture col. no.: DSM 6521, ATCC 11172, NCIB 8251, JCM 13061, BCRC 14349, NCAIM B.01522, NCCB 92006, NCIMB 8251

Strain history: K. Komagata <-- R. Hugh 821 <-- ATCC 11172 <-- NCIMB 8251 <-- W. C. Evans.

NCBI tax ID(s): 303 (species)

Other strains from Pseudomonas putida

P. putida 90, DSM 291, ATCC 12633, DSM 50202, ... (type strain)
P. putida 1593, DSM 295
P. putida C-1, DSM 437, ATCC 23974, DSM 50253
P. putida 77, DSM 1693, ATCC 8209, CCM 380, ...
P. putida 12/5, DSM 1868
P. putida PaW 340, DSM 2112
P. putida DSM 3226
P. putida mt-2 PaW1, pWWO, DSM 3931, ATCC ...
P. putida MT20, pWW20, DSM 3932, NCIB 12186
P. putida MT15, pWW15, DSM 3936, NCIB 12184
P. putida PaW611, pWW53-4, DSM 3937
P. putida PaW701, pWW60-1, DSM 3938, NCIB ...
P. putida KF439, pKF439, DSM 4011
P. putida PaW736, pWW60-22, DSM 4302, NCIB ...
P. putida MT53, pWW53, DSM 4303, NCIB 12187
P. putida CAM, PpG1, DSM 4475
P. putida NAH, PpG7, DSM 4476
P. putida NIC, PpG25, DSM 4477
P. putida PpG2100, SAL, DSM 4478
P. putida PaW 130, DSM 5169
P. putida PaW 95, DSM 5170
P. putida CLB250, DSM 5232
P. putida DSM 84, IMG 1513
P. putida mt-2 KT2440, DSM 6125, ATCC 47054, ...
P. putida S-832, DSM 6883
P. putida S-313, DSM 6884
P. putida BG1, DSM 6413
P. putida pUTK9, DSM 6701, RB 1351
P. putida US2, DSM 6755
P. putida F1, PpF1, DSM 6899, ATCC 700007, ...
P. putida PS, DSM 7189
P. putida Strain G, DSM 7286, BKM BN-1123, ...
P. putida Strain A, DSM 7314, NCIMB 11286, ...
P. putida MM1, DSM 9278
P. putida RW20-3b, DSM 11738
P. putida GS1, DSM 12264
P. putida 2-2L, DSM 12585
P. putida PNP1, DSM 12448
P. putida U, DSM 12735, ATCC 17514, NCIMB ...
P. putida DSM 13624, IMI 358533
P. putida TM1, DSM 16845
P. putida 50-3-3, IBPM B-20, DSM 46608, CCEB ...
P. putida Berlin 33/2, DSM 50026
P. putida cl-B, DSM 50198, ATCC 17453, ICPB ...
P. putida 53-2, DSM 50208, ATCC 17485, ICPB ...
P. putida DSM 50257, ATCC 6876, DSM 60118, ...
P. putida MT-I1, DSM 21680
P. putida WB, DSM 23849
P. putida ST033293(HKI),
P. putida 160, DSM 50194, ATCC 17529, ICPB ...
P. putida MS of E.E. Snell, DSM 50204, ATCC ...
P. putida S16, DSM 28022
P. putida B6-2, DSM 28064
P. putida SQ1, DSM 100120
P. putida Z2, DSM 16527
P. putida TEC1, DSM 26234
P. putida TEC1 407.1-delta 2, DSM 26250
P. putida TEC1 407.3-delta2, DSM 26251
P. putida TEC1 407-delta1, DSM 26252
P. putida S13.1.2, DSM 102034
P. putida TEC1 91-delta 1, DSM 26253
P. putida CIP 104063, ATCC 49128
P. putida CIP 55.5, ATCC 795, IAM 1505, NCDO ...
P. putida CIP 59.25, ATCC 12842, NCIMB 8865, ...
P. putida CIP 59.26, NCIMB 8248
P. putida CIP 108916, LMG 1246, ATCC 17430, ...
P. putida CIP 52.195
P. putida CIP 52.196
P. putida CIP 52.193
P. putida CIP 52.197
P. putida CIP 52.198
P. putida CIP 52.194
P. putida CIP 52.190
P. putida CIP 101794
P. putida CIP 102341
P. putida CIP 101936
P. putida CIP 59.19, NCIMB 8729
P. putida CIP 52.189
P. putida CCUG 264
P. putida CCUG 553, LMG 2189
P. putida CCUG 2471
P. putida CCUG 2479
P. putida CCUG 2525, NRRL B-2022
P. putida CCUG 15619
P. putida CCUG 18875
P. putida CCUG 27052
P. putida CCUG 28920
P. putida CCUG 29643
P. putida CCUG 30612
P. putida CCUG 31110
P. putida CCUG 32007
P. putida CCUG 33113
P. putida CCUG 33582
P. putida CCUG 33721
P. putida CCUG 34242
P. putida CCUG 35570
P. putida CCUG 37253
P. putida CCUG 42126
P. putida CCUG 49576
P. putida CCUG 49716
P. putida CCUG 50315
P. putida CCUG 50317
P. putida CCUG 54971
P. putida CCUG 57833
P. putida CCUG 60837
P. putida CCUG 61918
P. putida JCM 13062, ATCC 11250, CCM 3656, ...
P. putida JCM 14351, ATCC 598, NRRL B-251
P. putida JCM 18798
P. putida JCM 20004, IAM 1002
P. putida JCM 20005, IAM 1003
P. putida JCM 20028, IAM 1049
P. putida JCM 20029, IAM 1050
P. putida JCM 20048, IAM 1094
P. putida JCM 20066, IAM 1128
P. putida JCM 20089, IAM 1177
P. putida JCM 20102, IAM 1200
P. putida JCM 20111, IAM 1218
P. putida JCM 20112, ATCC 17464, IAM 1219
P. putida JCM 20120, IAM 1235
P. putida JCM 20129, IAM 1250
P. putida JCM 20188, ATCC 4359, IAM 1506
P. putida JCM 20228, IAM 1629
P. putida JCM 9045
P. putida JCM 9800
P. putida JCM 9802

Section

Pseudomonas putida DSM 6521 is a mesophilic human pathogen of the family Pseudomonadaceae.

human pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas putida**
	Full Scientific Name (PNU)	Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)

	Synonym	"Bacillus* putidus"*
	Synonym	Arthrobacter siderocapsulatus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2713]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #2713]

Culture medium growth

[Ref.: #2713]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2713]

Culture medium composition

expand / minimize

[Ref.: #2713]

Culture medium

MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)

[Ref.: #2713]

Culture medium growth

[Ref.: #2713]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2713]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2713]			growth	26 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #2713]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #2713]	21978	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	-	+	+	+	+
[Ref.: #2713]	20217	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	-	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence LC507958 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	421
Soil Samples	444
Animal Samples	802
Plant Samples	305
Total Samples	1972

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2713]	Pathogenicity (human)	yes
[Ref.: #2713]	Pathogenicity (animal)	yes
[Ref.: #2713]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Pseudomonas putida strain ATCC 11172 16S ribosomal RNA gene, partial sequence	AF094745	1476	ENA	303 tax ID	*
[Ref.: #20218]	Pseudomonas putida 16S ribosomal RNA gene, strain: ATCC 11172, partial sequence	D85992	1329	ENA	303 tax ID	*
[Ref.: #67770]	Pseudomonas putida JCM 13061 gene for 16S rRNA, partial sequence	LC507958	1459	ENA	303 tax ID

Availability in culture collections External links

[Ref.: #2713]

Culture collection no.

DSM 6521, ATCC 11172, NCIB 8251, JCM 13061, BCRC 14349, NCAIM B.01522, NCCB 92006, NCIMB 8251

[Ref.: #20218]

Associated Passport(s) in StrainInfo

95648, 95646, 95647

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Effect of carbon dioxide on growth of Pseudomonas putida ATCC 11172 on asparagine, citrate, glucose, and lactate in batch and continuous culture.	Molin G	Can J Microbiol	10.1139/m85-143	1985	*
Metabolism	Degradation of phenol by Pseudomonas putida ATCC 11172 in continuous culture at different ratios of biofilm surface to culture volume.	Molin G, Nilsson I	Appl Environ Microbiol	10.1128/aem.50.4.946-950.1985	1985	*
Metabolism	Application of reverse transcriptase PCR for monitoring expression of the catabolic dmpN gene in a phenol-degrading sequencing batch reactor.	Selvaratnam S, Schoedel BA, McFarland BL, Kulpa CF	Appl Environ Microbiol	10.1128/aem.61.11.3981-3985.1995	1995	*
Metabolism	Characterization and optimization of a two-phase partitioning bioreactor for the biodegradation of phenol.	Collins LD, Daugulis AJ	Appl Microbiol Biotechnol	10.1007/s002530051008	1997	*
Enzymology	Identification and characterization of the AgmR regulator of Pseudomonas putida: role in alcohol utilization.	Vrionis HA, Daugulis AJ, Kropinski AM	Appl Microbiol Biotechnol	10.1007/s00253-001-0912-5	2002	*
Enzymology	Expanded application of a two-phase partitioning bioreactor through strain development and new feeding strategies.	Vrionis HA, Kropinski AM, Daugulis AJ	Biotechnol Prog	10.1021/bp020295f	2002	*
Metabolism	Enhancement of a two-phase partitioning bioreactor system by modification of the microbial catalyst: demonstration of concept.	Vrionis HA, Kropinski AM, Daugulis AJ	Biotechnol Bioeng	10.1002/bit.10313	2002	*
Metabolism	Degradation of xenobiotics in a partitioning bioreactor in which the partitioning phase is a polymer.	Amsden BG, Bochanysz J, Daugulis AJ	Biotechnol Bioeng	10.1002/bit.10804	2003	*
Metabolism	Enhanced biodegradation of phenol by a microbial consortium in a solid-liquid two phase partitioning bioreactor.	Prpich GP, Daugulis AJ	Biodegradation	10.1007/s10532-004-2036-y	2005	*
Metabolism	Electrical wiring of Pseudomonas putida and Pseudomonas fluorescens with osmium redox polymers.	Timur S, Haghighi B, Tkac J, Pazarlioglu N, Telefoncu A, Gorton L	Bioelectrochemistry	10.1016/j.bioelechem.2006.08.001	2006	*
Metabolism	Degradation of phenol and TCE using suspended and chitosan-bead immobilized Pseudomonas putida.	Chen YM, Lin TF, Huang C, Lin JC, Hsieh FM	J Hazard Mater	10.1016/j.jhazmat.2007.03.030	2007	*
Metabolism	Biodegradation of phenol at high initial concentrations in two-phase partitioning batch and fed-batch bioreactors.	Collins LD, Daugulis AJ	Biotechnol Bioeng	10.1002/(SICI)1097-0290(19970705)55:1<155::AID-BIT16>3.0.CO;2-L	1997	*
Genetics	Identification of novel non-metal haloperoxidases from the marine metagenome.	Gwon HJ, Teruhiko I, Shigeaki H, Baik SH	J Microbiol Biotechnol	10.4014/jmb.1310.10070	2014	*
	Sand administration as an instrument for biofilm control of Pseudomonas putida ATCC 11172 in chemostat cultures.	Molin G, Nilsson I	Biotechnol Bioeng	10.1002/bit.260270114	1985	*
	Effects of carbon and oxygen limitations and calcium concentrations on biofilm removal processes.	Applegate DH, Bryers JD	Biotechnol Bioeng	10.1002/bit.260370105	1991	*
	Utilization of phenylpropanoids by pseudomonas putida soil isolates and its probable taxonomic significance.	Nonaka K, Ohta H, Sato Y, Hosokawa K	Microbes Environ	10.1264/jsme2.me08545	2008	*

References

#2713

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6521

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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