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title = {Comparative study of the aerobic, heterotrophic bacterial flora of Chesapeake Bay and Tokyo Bay.},
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doi = {10.1128/aem.37.4.704-714.1979},
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title = {Program of bacteriophage gh-1 DNA transcription in infected Pseudomonas putida.},
author = {Jolly JF.},
journal = {J Virol},
year = {1979},
doi = {10.1128/jvi.30.3.771-776.1979},
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title = {Response of Neisseria gonorrhoeae to Bdellovibrio species.},
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title = {The effect of a non-metabolizable analog on mandelate catabolism in Pseudomonas putida.},
author = {Hegeman GD, Root RT},
journal = {Arch Microbiol},
year = {1976},
doi = {10.1007/BF00416964},
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title = {Improved method of selection for mutants of Pseudomonas putida.},
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journal = {Appl Microbiol},
year = {1975},
doi = {10.1128/am.30.6.1046-1047.1975},
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title = {Properties of an inducible uptake system for beta-ketoadipate in Pseudomonas putida.},
author = {Ornston LN, Parke D.},
journal = {J Bacteriol},
year = {1976},
doi = {10.1128/jb.125.2.475-488.1976},
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title = {Constitutive synthesis of enzymes of the protocatechuate pathway and of the beta-ketoadipate uptake system in mutant strains of Pseudomonas putida.},
author = {Parke D, Ornston LN.},
journal = {J Bacteriol},
year = {1976},
doi = {10.1128/jb.126.1.272-281.1976},
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title = {Acyloin formation by benzoylformate decarboxylase from Pseudomonas putida.},
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year = {1992},
doi = {10.1128/aem.58.5.1699-1704.1992},
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title = {Numerical taxonomy of gram-negative, nonmotile, nonfermentative bacteria isolated during chilled storage of lamb carcasses.},
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journal = {Appl Environ Microbiol},
year = {1992},
doi = {10.1128/aem.58.7.2245-2249.1992},
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title = {The ferric-pseudobactin receptor PupA of Pseudomonas putida WCS358: homology to TonB-dependent Escherichia coli receptors and specificity of the protein.},
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journal = {Mol Microbiol},
year = {1991},
doi = {10.1111/j.1365-2958.1991.tb00736.x},
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title = {Purification of glucose-inducible outer membrane protein OprB of Pseudomonas putida and reconstitution of glucose-specific pores.},
author = {Saravolac EG, Taylor NF, Benz R, Hancock RE.},
journal = {J Bacteriol},
year = {1991},
doi = {10.1128/jb.173.16.4970-4976.1991},
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title = {Distribution of alginate gene sequences in the Pseudomonas rRNA homology group I-Azomonas-Azotobacter lineage of superfamily B procaryotes.},
author = {Fialho AM, Zielinski NA, Fett WF, Chakrabarty AM, Berry A.},
journal = {Appl Environ Microbiol},
year = {1990},
doi = {10.1128/aem.56.2.436-443.1990},
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@article{lin230354,
title = {Detection of Helicobacter pylori in stomach tissue by use of a monoclonal antibody.},
author = {Husson MO, Leclerc H.},
journal = {J Clin Microbiol},
year = {1991},
doi = {10.1128/jcm.29.12.2831-2834.1991},
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@article{lin230375,
title = {Pathways for metabolism of ketoaldonic acids in an Erwinia sp.},
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journal = {J Bacteriol},
year = {1991},
doi = {10.1128/jb.173.21.6651-6656.1991},
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@article{lin26728,
title = {Purification, characterization, and structure of pseudobactin 589 A, a siderophore from a plant growth promoting Pseudomonas.},
author = {Persmark M, Frejd T, Mattiasson B},
journal = {Biochemistry},
year = {1990},
doi = {10.1021/bi00483a026},
pmid = {2145034}
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title = {Nucleotide sequence of the gene encoding the repressor for the histidine utilization genes of Pseudomonas putida.},
author = {Allison SL, Phillips AT.},
journal = {J Bacteriol},
year = {1990},
doi = {10.1128/jb.172.9.5470-5476.1990},
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title = {Mandelate pathway of Pseudomonas putida: sequence relationships involving mandelate racemase, (S)-mandelate dehydrogenase, and benzoylformate decarboxylase and expression of benzoylformate decarboxylase in Escherichia coli.},
author = {Tsou AY, Ransom SC, Gerlt JA, Buechter DD, Babbitt PC, Kenyon GL},
journal = {Biochemistry},
year = {1990},
doi = {10.1021/bi00494a015},
pmid = {2271624}
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@article{lin230398,
title = {Purification and comparative studies of dihydrolipoamide dehydrogenases from the anaerobic, glycine-utilizing bacteria Peptostreptococcus glycinophilus, Clostridium cylindrosporum, and Clostridium sporogenes.},
author = {Dietrichs D, Andreesen JR.},
journal = {J Bacteriol},
year = {1990},
doi = {10.1128/jb.172.1.243-251.1990},
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@article{lin26729,
title = {Sequence analysis of the hutH gene encoding histidine ammonia-lyase in Pseudomonas putida.},
author = {Consevage MW, Phillips AT},
journal = {J Bacteriol},
year = {1990},
doi = {10.1128/jb.172.5.2224-2229.1990},
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@article{lin230348,
title = {Different types of dienelactone hydrolase in 4-fluorobenzoate-utilizing bacteria.},
author = {Schlomann M, Schmidt E, Knackmuss HJ.},
journal = {J Bacteriol},
year = {1990},
doi = {10.1128/jb.172.9.5112-5118.1990},
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@article{lin26732,
title = {Selection and characterization of a mutant of the cloned gene for mandelate racemase that confers resistance to an affinity label by greatly enhanced production of enzyme.},
author = {Tsou AY, Ransom SC, Gerlt JA, Powers VM, Kenyon GL},
journal = {Biochemistry},
year = {1989},
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pmid = {2496759}
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@article{lin230384,
title = {Cloning, sequencing, and expression of the gene for NADH-sensitive citrate synthase of Pseudomonas aeruginosa.},
author = {Donald LJ, Molgat GF, Duckworth HW.},
journal = {J Bacteriol},
year = {1989},
doi = {10.1128/jb.171.10.5542-5550.1989},
pmid = {2507528}
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@article{lin230316,
title = {Growth of genetically engineered Pseudomonas aeruginosa and Pseudomonas putida in soil and rhizosphere.},
author = {Yeung KH, Schell MA, Hartel PG.},
journal = {Appl Environ Microbiol},
year = {1989},
doi = {10.1128/aem.55.12.3243-3246.1989},
pmid = {2515805}
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@article{lin230397,
title = {Isolation of an atypically small lipoamide dehydrogenase involved in the glycine decarboxylase complex from Eubacterium acidaminophilum.},
author = {Freudenberg W, Dietrichs D, Lebertz H, Andreesen JR.},
journal = {J Bacteriol},
year = {1989},
doi = {10.1128/jb.171.3.1346-1354.1989},
pmid = {2537814}
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@article{lin230381,
title = {Cloning and expression of plasmid genes encoding resistances to chromate and cobalt in Alcaligenes eutrophus.},
author = {Nies A, Nies DH, Silver S.},
journal = {J Bacteriol},
year = {1989},
doi = {10.1128/jb.171.9.5065-5070.1989},
pmid = {2549011}
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@article{lin230212,
title = {Cloning of pMOL28-encoded nickel resistance genes and expression of the genes in Alcaligenes eutrophus and Pseudomonas spp.},
author = {Siddiqui RA, Benthin K, Schlegel HG.},
journal = {J Bacteriol},
year = {1989},
doi = {10.1128/jb.171.9.5071-5078.1989},
pmid = {2549012}
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@article{lin26739,
title = {Cloning, DNA sequence analysis, and expression in Escherichia coli of the gene for mandelate racemase from Pseudomonas putida.},
author = {Ransom SC, Gerlt JA, Powers VM, Kenyon GL},
journal = {Biochemistry},
year = {1988},
doi = {10.1021/bi00402a006},
pmid = {2831968}
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title = {Organization and multiple regulation of histidine utilization genes in Pseudomonas putida.},
author = {Hu L, Phillips AT.},
journal = {J Bacteriol},
year = {1988},
doi = {10.1128/jb.170.9.4272-4279.1988},
pmid = {2842309}
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title = {Cloning and expression in Escherichia coli of histidine utilization genes from Pseudomonas putida.},
author = {Consevage MW, Porter RD, Phillips AT.},
journal = {J Bacteriol},
year = {1985},
doi = {10.1128/jb.162.1.138-146.1985},
pmid = {2858467}
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@article{lin374877,
title = {Siderophore-mediated uptake of Fe3+ by the plant growth-stimulating Pseudomonas putida strain WCS358 and by other rhizosphere microorganisms.},
author = {de Weger LA, van Arendonk JJ, Recourt K, van der Hofstad GA, Weisbeek PJ, Lugtenberg B.},
journal = {J Bacteriol},
year = {1988},
doi = {10.1128/jb.170.10.4693-4698.1988},
pmid = {2971647}
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@article{lin230376,
title = {Evaluation of an immunofluorescent-antibody test for rapid identification of Pseudomonas aeruginosa in blood cultures.},
author = {Counts GW, Schwartz RW, Ulness BK, Hamilton DJ, Rosok MJ, Cunningham MD, Tam MR, Darveau RP.},
journal = {J Clin Microbiol},
year = {1988},
doi = {10.1128/jcm.26.6.1161-1165.1988},
pmid = {3133390}
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@article{lin26735,
title = {Specificity of pyoverdine-mediated iron uptake among fluorescent Pseudomonas strains.},
author = {Hohnadel D, Meyer JM},
journal = {J Bacteriol},
year = {1988},
doi = {10.1128/jb.170.10.4865-4873.1988},
pmid = {3170485}
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@article{lin230396,
title = {New naphthalene-degrading marine Pseudomonas strains.},
author = {Garcia-Valdes E, Cozar E, Rotger R, Lalucat J, Ursing J.},
journal = {Appl Environ Microbiol},
year = {1988},
doi = {10.1128/aem.54.10.2478-2485.1988},
pmid = {3202629}
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@article{lin230323,
title = {Purification and properties of formylglutamate amidohydrolase from Pseudomonas putida.},
author = {Hu L, Mulfinger LM, Phillips AT.},
journal = {J Bacteriol},
year = {1987},
doi = {10.1128/jb.169.10.4696-4702.1987},
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@article{lin230372,
title = {Enumeration of Vibrio cholerae O1 in Bangladesh waters by fluorescent-antibody direct viable count.},
author = {Brayton PR, Tamplin ML, Huq A, Colwell RR.},
journal = {Appl Environ Microbiol},
year = {1987},
doi = {10.1128/aem.53.12.2862-2865.1987},
pmid = {3324967}
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@article{lin374873,
title = {Primary structure of protein B from Pseudomonas putida, member of a new class of 2Fe-2S ferredoxins.},
author = {Morrice N, Geary P, Cammack R, Harris A, Beg F, Aitken A.},
journal = {FEBS Lett},
year = {1988},
doi = {10.1016/0014-5793(88)80845-7},
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@article{lin230365,
title = {Distribution and significance of heterotrophic marine bacteria with antibacterial activity.},
author = {Nair S, Simidu U.},
journal = {Appl Environ Microbiol},
year = {1987},
doi = {10.1128/aem.53.12.2957-2962.1987},
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@article{lin230315,
title = {Studies on the sensitivity and specificity of the Limulus amebocyte lysate test and rabbit pyrogen assays.},
author = {Devleeschouwer MJ, Cornil MF, Dony J.},
journal = {Appl Environ Microbiol},
year = {1985},
doi = {10.1128/aem.50.6.1509-1511.1985},
pmid = {3911908}
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@article{lin26754,
title = {Presence and quantity of dehydroalanine in histidine ammonia-lyase from Pseudomonas putida.},
author = {Consevage MW, Phillips AT},
journal = {Biochemistry},
year = {1985},
doi = {10.1021/bi00323a010},
pmid = {3919759}
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@article{lin230332,
title = {Cloning of genes specifying carbohydrate catabolism in Pseudomonas aeruginosa and Pseudomonas putida.},
author = {Cuskey SM, Wolff JA, Phibbs PV, Olsen RH.},
journal = {J Bacteriol},
year = {1985},
doi = {10.1128/jb.162.3.865-871.1985},
pmid = {3922954}
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@article{lin230310,
title = {Immunological and structural relatedness of catabolic ornithine carbamoyltransferases and the anabolic enzymes of enterobacteria.},
author = {Falmagne P, Portetelle D, Stalon V.},
journal = {J Bacteriol},
year = {1985},
doi = {10.1128/jb.161.2.714-719.1985},
pmid = {3968036}
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@article{lin230340,
title = {The active transport of 2-keto-D-gluconate in vesicles prepared from Pseudomonas purida.},
author = {Agbanyo F, Taylor NF.},
journal = {Biochem J},
year = {1985},
doi = {10.1042/bj2280257},
pmid = {4004814}
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@article{lin230379,
title = {beta-Ketoadipate pathway in Trichosporon cutaneum modified for methyl-substituted metabolites.},
author = {Powlowski JB, Dagley S.},
journal = {J Bacteriol},
year = {1985},
doi = {10.1128/jb.163.3.1126-1135.1985},
pmid = {4040904}
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@article{lin230343,
title = {Involvement of threonine dehydratase in biosynthesis of the alpha-ketobutyrate prosthetic group of urocanase.},
author = {Daumy GO, Cohn MS, Phillips AT.},
journal = {J Bacteriol},
year = {1974},
doi = {10.1128/jb.120.3.1249-1255.1974},
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@article{lin230392,
title = {Evaluation of aquarium antibiotic formulations.},
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journal = {Antimicrob Agents Chemother},
year = {1974},
doi = {10.1128/aac.6.4.379},
pmid = {4157331}
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@article{lin230383,
title = {Glucose uptake and phosphorylation in Pseudomonas fluorescens.},
author = {Eisenberg RC, Butters SJ, Quay SC, Friedman SB.},
journal = {J Bacteriol},
year = {1974},
doi = {10.1128/jb.120.1.147-153.1974},
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@article{lin230377,
title = {Metabolism of benzoic acid by bacteria: 3,5-cyclohexadiene-1,2-diol-1-carboxylic acid is an intermediate in the formation of catechol.},
author = {Reiner AM.},
journal = {J Bacteriol},
year = {1971},
doi = {10.1128/jb.108.1.89-94.1971},
pmid = {4399343}
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title = {Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid.},
author = {Williams PA, Murray K.},
journal = {J Bacteriol},
year = {1974},
doi = {10.1128/jb.120.1.416-423.1974},
pmid = {4418209}
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@article{lin230351,
title = {Sterility of salmonid roe and practicality of hatching gnotobiotic salmonid fish.},
author = {Trust TJ.},
journal = {Appl Microbiol},
year = {1974},
doi = {10.1128/am.28.3.340-341.1974},
pmid = {4421228}
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title = {Incidence and identification of Pseudomonas fluorescens and Pseudomonas putida in the clinical laboratory.},
author = {Blazevic DJ, Koepcke MH, Matsen JM.},
journal = {Appl Microbiol},
year = {1973},
doi = {10.1128/am.25.1.107-110.1973},
pmid = {4631431}
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title = {Glucolysis in Pseudomonas putida: physiological role of alternative routes from the analysis of defective mutants.},
author = {Vicente M, Canovas JL.},
journal = {J Bacteriol},
year = {1973},
doi = {10.1128/jb.116.2.908-914.1973},
pmid = {4745434}
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@article{lin230394,
title = {Comparative allostery of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthetase as a molecular basis for classification.},
author = {Jensen RA, Stenmark SL.},
journal = {J Bacteriol},
year = {1970},
doi = {10.1128/jb.101.3.763-769.1970},
pmid = {4985590}
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title = {Characteristics of bacteriophages attacking psychrophilic and mesophilic pseudomonads.},
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journal = {J Virol},
year = {1968},
doi = {10.1128/jvi.2.4.357-364.1968},
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title = {Detection of arginine dihydrolase in nonfermentative gram-negative bacteria by use of thin-layer chromatography.},
author = {Williams GA, Blazevic DJ, Ederer GM.},
journal = {Appl Microbiol},
year = {1971},
doi = {10.1128/am.22.6.1135-1137.1971},
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title = {Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid.},
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journal = {J Bacteriol},
year = {1970},
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journal = {Genetics},
year = {1970},
doi = {10.1093/genetics/66.2.245},
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@article{lin230374,
title = {Synthesis of the enzymes of the mandelate pathway by Pseudomonas putida. I. Synthesis of enzymes by the wild type.},
author = {Hegeman GD.},
journal = {J Bacteriol},
year = {1966},
doi = {10.1128/jb.91.3.1140-1154.1966},
pmid = {5929747}
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@article{lin230371,
title = {Glutamine synthetase of pseudomonads: some biochemical and physicochemical properties.},
author = {Meyer JM, Stadtman ER.},
journal = {J Bacteriol},
year = {1981},
doi = {10.1128/jb.146.2.705-712.1981},
pmid = {6111557}
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@article{lin230328,
title = {Roles of cysteine sulfinate and transaminase on in vitro dark reversion of urocanase in Pseudomonas putida.},
author = {Hug DH, Hunter JK.},
journal = {J Bacteriol},
year = {1982},
doi = {10.1128/jb.151.2.813-818.1982},
pmid = {6124532}
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@article{lin230344,
title = {Cyclic adenosine 3',5'-monophosphate levels in Pseudomonas putida and Pseudomonas aeruginosa during induction and carbon catabolite repression of histidase synthesis.},
author = {Phillips AT, Mulfinger LM.},
journal = {J Bacteriol},
year = {1981},
doi = {10.1128/jb.145.3.1286-1292.1981},
pmid = {6259129}
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@article{lin230346,
title = {Integration of R91-5::Tn501 into the Pseudomonas putida PPN chromosome and genetic circularity of the chromosomal map.},
author = {Dean HF, Morgan AF.},
journal = {J Bacteriol},
year = {1983},
doi = {10.1128/jb.153.1.485-497.1983},
pmid = {6294058}
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@article{lin230387,
title = {Surface localization of Pseudomonas aeruginosa outer membrane porin protein F by using monoclonal antibodies.},
author = {Mutharia LM, Hancock RE.},
journal = {Infect Immun},
year = {1983},
doi = {10.1128/iai.42.3.1027-1033.1983},
pmid = {6315589}
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@article{lin230317,
title = {Use of ureidopenicillins for selection of plasmid vector transformants in Pseudomonas aeruginosa and Pseudomonas putida.},
author = {Day DL, Yasinow D, McDonough J, Shuster CW.},
journal = {J Bacteriol},
year = {1984},
doi = {10.1128/jb.157.3.937-939.1984},
pmid = {6321446}
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@article{lin230326,
title = {Expression of the argF gene of Pseudomonas aeruginosa in Pseudomonas aeruginosa, Pseudomonas putida, and Escherichia coli.},
author = {Clarke PH, Laverack PD.},
journal = {J Bacteriol},
year = {1983},
doi = {10.1128/jb.154.1.508-512.1983},
pmid = {6403512}
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@article{lin230380,
title = {Pseudomonas aeruginosa mutants affected in anaerobic growth on arginine: evidence for a four-gene cluster encoding the arginine deiminase pathway.},
author = {Vander Wauven C, Pierard A, Kley-Raymann M, Haas D.},
journal = {J Bacteriol},
year = {1984},
doi = {10.1128/jb.160.3.928-934.1984},
pmid = {6438064}
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@article{lin230357,
title = {Bacterial formation and metabolism of 6-hydroxyhexanoate: evidence of a potential role for omega-oxidation.},
author = {Kunz DA, Weimer PJ.},
journal = {J Bacteriol},
year = {1983},
doi = {10.1128/jb.156.2.567-575.1983},
pmid = {6630146}
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@article{lin230353,
title = {Headspace analysis of volatile metabolites of Pseudomonas aeruginosa and related species by gas chromatography-mass spectrometry.},
author = {Labows JN, McGinley KJ, Webster GF, Leyden JJ.},
journal = {J Clin Microbiol},
year = {1980},
doi = {10.1128/jcm.12.4.521-526.1980},
pmid = {6775012}
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@article{lin230366,
title = {Inhibition, but not uncoupling, of respiratory energy coupling of three bacterial species by nitrite.},
author = {Rake JB, Eagon RG.},
journal = {J Bacteriol},
year = {1980},
doi = {10.1128/jb.144.3.975-982.1980},
pmid = {6777373}
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@article{lin230331,
title = {Monoclonal antibodies against Pseudomonas aeruginosa outer membrane antigens: isolation and characterization.},
author = {Hancock RE, Wieczorek AA, Mutharia LM, Poole K.},
journal = {Infect Immun},
year = {1982},
doi = {10.1128/iai.37.1.166-171.1982},
pmid = {6809625}
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title = {A carbon starvation survival gene of Pseudomonas putida is regulated by sigma 54.},
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journal = {J Bacteriol},
year = {1995},
doi = {10.1128/jb.177.7.1850-1859.1995},
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title = {A revised map location for the histidine utilization genes in Pseudomonas putida.},
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doi = {10.1002/jobm.3620340408},
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title = {Inability of muconate cycloisomerases to cause dehalogenation during conversion of 2-chloro-cis,cis-muconate.},
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year = {1994},
doi = {10.1128/jb.176.14.4366-4375.1994},
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title = {Characterization of the pcaR regulatory gene from Pseudomonas putida, which is required for the complete degradation of p-hydroxybenzoate.},
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journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.18.5771-5779.1994},
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title = {A novel structural basis for membrane association of a protein: construction of a chimeric soluble mutant of (S)-mandelate dehydrogenase from Pseudomonas putida.},
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title = {Enzymatic determination of itoic acid, a Bacillus subtilis siderophore, and 2,3-dihydroxybenzoic acid.},
author = {Ito T.},
journal = {Appl Environ Microbiol},
year = {1993},
doi = {10.1128/aem.59.7.2343-2345.1993},
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title = {Energy conservation by pyrroloquinoline quinol-linked xylose oxidation in Pseudomonas putida NCTC 10936 during carbon-limited growth in chemostat culture.},
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journal = {FEMS Microbiol Lett},
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doi = {10.1111/j.1574-6968.1993.tb06012.x},
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title = {Characterization of type II protein secretion (xcp) genes in the plant growth-stimulating Pseudomonas putida, strain WCS358.},
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journal = {Mol Gen Genet},
year = {1996},
doi = {10.1007/bf02174038},
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title = {Conservation of PcaQ, a transcriptional activator of pca genes for catabolism of phenolic compounds, in Agrobacterium tumefaciens and Rhizobium species.},
author = {Parke D.},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.12.3671-3675.1996},
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@article{lin374899,
title = {Identification of Aeromonas hydrophila hybridization group 1 by PCR assays.},
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journal = {Appl Environ Microbiol},
year = {1996},
doi = {10.1128/aem.62.4.1167-1170.1996},
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@article{lin26703,
title = {Distribution of amine oxidases and amine dehydrogenases in bacteria grown on primary amines and characterization of the amine oxidase from Klebsiella oxytoca.},
author = {Hacisalihoglu A, Jongejan JA, Duine JA},
journal = {Microbiology (Reading)},
year = {1997},
doi = {10.1099/00221287-143-2-505},
pmid = {9043125}
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@article{lin374884,
title = {Direct detection and identification of Pseudomonas aeruginosa in clinical samples such as skin biopsy specimens and expectorations by multiplex PCR based on two outer membrane lipoprotein genes, oprI and oprL.},
author = {De Vos D, Lim A, Pirnay JP, Struelens M, Vandenvelde C, Duinslaeger L, Vanderkelen A, Cornelis P.},
journal = {J Clin Microbiol},
year = {1997},
doi = {10.1128/jcm.35.6.1295-1299.1997},
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@article{lin230296,
title = {Fluorescent pseudomonad pyoverdines bind and oxidize ferrous ion.},
author = {Xiao R, Kisaalita WS.},
journal = {Appl Environ Microbiol},
year = {1998},
doi = {10.1128/aem.64.4.1472-1476.1998},
pmid = {9575133}
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@article{lin374864,
title = {Genetics of ferulic acid bioconversion to protocatechuic acid in plant-growth-promoting Pseudomonas putida WCS358.},
author = {Venturi V, Zennaro F, Degrassi G, Okeke BC, Bruschi CV.},
journal = {Microbiology (Reading)},
year = {1998},
doi = {10.1099/00221287-144-4-965},
pmid = {9579070}
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@article{lin230288,
title = {Spatial and temporal variation of phenanthrene-degrading bacteria in intertidal sediments.},
author = {Berardesco G, Dyhrman S, Gallagher E, Shiaris MP.},
journal = {Appl Environ Microbiol},
year = {1998},
doi = {10.1128/aem.64.7.2560-2565.1998},
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@article{lin230281,
title = {Isolation and characterization of toluene-sensitive mutants from the toluene-resistant bacterium Pseudomonas putida GM73.},
author = {Kim K, Lee S, Lee K, Lim D.},
journal = {J Bacteriol},
year = {1998},
doi = {10.1128/jb.180.14.3692-3696.1998},
pmid = {9658016}
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@article{lin230305,
title = {Outbreak of Pseudomonas fluorescens bacteremia among oncology patients.},
author = {Hsueh PR, Teng LJ, Pan HJ, Chen YC, Sun CC, Ho SW, Luh KT.},
journal = {J Clin Microbiol},
year = {1998},
doi = {10.1128/jcm.36.10.2914-2917.1998},
pmid = {9738043}
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@article{lin230390,
title = {Characterization of genes involved in biosynthesis of a novel antibiotic from Burkholderia cepacia BC11 and their role in biological control of Rhizoctonia solani.},
author = {Kang Y, Carlson R, Tharpe W, Schell MA.},
journal = {Appl Environ Microbiol},
year = {1998},
doi = {10.1128/aem.64.10.3939-3947.1998},
pmid = {9758823}
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@article{lin230369,
title = {Molecular genetic analysis of phosphite and hypophosphite oxidation by Pseudomonas stutzeri WM88.},
author = {Metcalf WW, Wolfe RS.},
journal = {J Bacteriol},
year = {1998},
doi = {10.1128/jb.180.21.5547-5558.1998},
pmid = {9791102}
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@article{lin230361,
title = {Psychrotolerant bacteria isolated from arctic soil that degrade polychlorinated biphenyls at low temperatures },
author = {Master ER, Mohn WW.},
journal = {Appl Environ Microbiol},
year = {1998},
doi = {10.1128/aem.64.12.4823-4829.1998},
pmid = {9835569}
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@article{lin230358,
title = {Identification of nitrite-oxidizing bacteria with monoclonal antibodies recognizing the nitrite oxidoreductase.},
author = {Bartosch S, Wolgast I, Spieck E, Bock E.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.9.4126-4133.1999},
pmid = {10473425}
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@article{lin230378,
title = {Methanotroph diversity in landfill soil: isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis.},
author = {Wise MG, McArthur JV, Shimkets LJ.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.11.4887-4897.1999},
pmid = {10543800}
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@article{lin374863,
title = {Cloning and characterisation of the rpoS gene from plant growth-promoting Pseudomonas putida WCS358: RpoS is not involved in siderophore and homoserine lactone production.},
author = {Kojic M, Degrassi G, Venturi V.},
journal = {Biochim Biophys Acta},
year = {1999},
doi = {10.1016/s0167-4781(99)00210-9},
pmid = {10673044}
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@article{lin230313,
title = {Isolation of bacteriophages specific to a fish pathogen, Pseudomonas plecoglossicida, as a candidate for disease control.},
author = {Park SC, Shimamura I, Fukunaga M, Mori KI, Nakai T.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.4.1416-1422.2000},
pmid = {10742221}
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@article{lin230301,
title = {Purification to homogeneity and characterization of a novel Pseudomonas putida chromate reductase.},
author = {Park CH, Keyhan M, Wielinga B, Fendorf S, Matin A.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.5.1788-1795.2000},
pmid = {10788340}
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@article{lin230294,
title = {Degradation of triphenyltin by a fluorescent pseudomonad.},
author = {Inoue H, Takimura O, Fuse H, Murakami K, Kamimura K, Yamaoka Y.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.8.3492-3498.2000},
pmid = {10919812}
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@article{lin374895,
title = {PCR assays that identify the grapevine dieback fungus Eutypa lata.},
author = {Lecomte P, Peros JP, Blancard D, Bastien N, Delye C.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.10.4475-4480.2000},
pmid = {11010901}
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@article{lin230345,
title = {Development of a vital fluorescent staining method for monitoring bacterial transport in subsurface environments.},
author = {Fuller ME, Streger SH, Rothmel RK, Mailloux BJ, Hall JA, Onstott TC, Fredrickson JK, Balkwill DL, DeFlaun MF.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.10.4486-4496.2000},
pmid = {11010903}
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@article{lin230286,
title = {Rapid detection, identification, and enumeration of Escherichia coli cells in municipal water by chemiluminescent in situ hybridization.},
author = {Stender H, Broomer AJ, Oliveira K, Perry-O'Keefe H, Hyldig-Nielsen JJ, Sage A, Coull J.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.1.142-147.2001},
pmid = {11133438}
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@article{lin374894,
title = {Role of the Tat ransport system in nitrous oxide reductase translocation and cytochrome cd1 biosynthesis in Pseudomonas stutzeri.},
author = {Heikkila MP, Honisch U, Wunsch P, Zumft WG.},
journal = {J Bacteriol},
year = {2001},
doi = {10.1128/jb.183.5.1663-1671.2001},
pmid = {11160097}
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@article{lin374893,
title = {Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling.},
author = {Schmalenberger A, Schwieger F, Tebbe CC.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.8.3557-3563.2001},
pmid = {11472932}
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@article{lin26679,
title = {Isolation and characterization of a Pseudomonas putida strain able to grow with trimethyl-1,2-dihydroxy-propyl-ammonium as sole source of carbon, energy and nitrogen.},
author = {Kaech A, Egli T},
journal = {Syst Appl Microbiol},
year = {2001},
doi = {10.1078/0723-2020-00043},
pmid = {11518329}
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@article{lin230282,
title = {cumA multicopper oxidase genes from diverse Mn(II)-oxidizing and non-Mn(II)-oxidizing Pseudomonas strains.},
author = {Francis CA, Tebo BM.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.9.4272-4278.2001},
pmid = {11526033}
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@article{lin26678,
title = {Suitability of the trans/cis ratio of unsaturated fatty acids in Pseudomonas putida NCTC 10936 as an indicator of the acute toxicity of chemicals.},
author = {Loffhagen N, Hartig C, Babel W},
journal = {Ecotoxicol Environ Saf},
year = {2001},
doi = {10.1006/eesa.2001.2089},
pmid = {11534954}
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@article{lin230324,
title = {Detection and quantification of methyl tert-butyl ether-degrading strain PM1 by real-time TaqMan PCR.},
author = {Hristova KR, Lutenegger CM, Scow KM.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.11.5154-5160.2001},
pmid = {11679339}
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@article{lin230295,
title = {Rapid identification of Staphylococcus aureus directly from blood cultures by fluorescence in situ hybridization with peptide nucleic acid probes.},
author = {Oliveira K, Procop GW, Wilson D, Coull J, Stender H.},
journal = {J Clin Microbiol},
year = {2002},
doi = {10.1128/jcm.40.1.247-251.2002},
pmid = {11773123}
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@article{lin230298,
title = {The active partition gene incC of IncP plasmids is required for stable maintenance in a broad range of hosts.},
author = {Siddique A, Figurski DH.},
journal = {J Bacteriol},
year = {2002},
doi = {10.1128/jb.184.6.1788-1793.2002},
pmid = {11872733}
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@article{lin374811,
title = {Simultaneous fluorescent gram staining and activity assessment of activated sludge bacteria.},
author = {Forster S, Snape JR, Lappin-Scott HM, Porter J.},
journal = {Appl Environ Microbiol},
year = {2002},
doi = {10.1128/aem.68.10.4772-4779.2002},
pmid = {12324319}
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@article{lin374874,
title = {Carbon and hydrogen stable isotope fractionation during aerobic bacterial degradation of aromatic hydrocarbons.},
author = {Morasch B, Richnow HH, Schink B, Vieth A, Meckenstock RU.},
journal = {Appl Environ Microbiol},
year = {2002},
doi = {10.1128/aem.68.10.5191-5194.2002},
pmid = {12324375}
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@article{lin374882,
title = {Plant lectin-like bacteriocin from a rhizosphere-colonizing Pseudomonas isolate.},
author = {Parret AH, Schoofs G, Proost P, De Mot R.},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/jb.185.3.897-908.2003},
pmid = {12533465}
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@article{lin374883,
title = {High-performance liquid chromatography analyses of pyoverdin siderophores differentiate among phytopathogenic fluorescent Pseudomonas Species.},
author = {Bultreys A, Gheysen I, Wathelet B, Maraite H, de Hoffmann E.},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/aem.69.2.1143-1153.2003},
pmid = {12571041}
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@article{lin26671,
title = {Identification and characterization of a mandelamide hydrolase and an NAD(P)+-dependent benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633.},
author = {McLeish MJ, Kneen MM, Gopalakrishna KN, Koo CW, Babbitt PC, Gerlt JA, Kenyon GL},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/JB.185.8.2451-2456.2003},
pmid = {12670968}
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@article{lin26666,
title = {Pseudomonas putida NCTC 10936 balances membrane fluidity in response to physical and chemical stress by changing the saturation degree and the trans/cis ratio of fatty acids.},
author = {Loffhagen N, Hartig C, Babel W},
journal = {Biosci Biotechnol Biochem},
year = {2004},
doi = {10.1271/bbb.68.317},
pmid = {14981294}
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@article{lin230352,
title = {A novel tetrahydrofolate-dependent O-demethylase gene is essential for growth of Sphingomonas paucimobilis SYK-6 with syringate.},
author = {Masai E, Sasaki M, Minakawa Y, Abe T, Sonoki T, Miyauchi K, Katayama Y, Fukuda M.},
journal = {J Bacteriol},
year = {2004},
doi = {10.1128/jb.186.9.2757-2765.2004},
pmid = {15090517}
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@article{lin374892,
title = {Bdellovibrio bacteriovorus strains produce a novel major outer membrane protein during predacious growth in the periplasm of prey bacteria.},
author = {Beck S, Schwudke D, Strauch E, Appel B, Linscheid M.},
journal = {J Bacteriol},
year = {2004},
doi = {10.1128/jb.186.9.2766-2773.2004},
pmid = {15090518}
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@article{lin26660,
title = {The putative malate/lactate dehydrogenase from Pseudomonas putida is an NADPH-dependent delta1-piperideine-2-carboxylate/delta1-pyrroline-2-carboxylate reductase involved in the catabolism of D-lysine and D-proline.},
author = {Muramatsu H, Mihara H, Kakutani R, Yasuda M, Ueda M, Kurihara T, Esaki N},
journal = {J Biol Chem},
year = {2004},
doi = {10.1074/jbc.M411918200},
pmid = {15561717}
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@article{lin230292,
title = {Rapid and simple quantification of bacterial cells by using a microfluidic device.},
author = {Sakamoto C, Yamaguchi N, Nasu M.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.2.1117-1121.2005},
pmid = {15691978}
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@article{lin26659,
title = {N-methyl-L-amino acid dehydrogenase from Pseudomonas putida. A novel member of an unusual NAD(P)-dependent oxidoreductase superfamily.},
author = {Mihara H, Muramatsu H, Kakutani R, Yasuda M, Ueda M, Kurihara T, Esaki N},
journal = {FEBS J},
year = {2005},
doi = {10.1111/j.1742-4658.2004.04541.x},
pmid = {15720386}
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@article{lin374875,
title = {Spatially resolved characterization of biogenic manganese oxide production within a bacterial biofilm.},
author = {Toner B, Fakra S, Villalobos M, Warwick T, Sposito G.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.3.1300-1310.2005},
pmid = {15746332}
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@article{lin26657,
title = {Formation of trans fatty acids is not involved in growth-linked membrane adaptation of Pseudomonas putida.},
author = {Hartig C, Loffhagen N, Harms H},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/AEM.71.4.1915-1922.2005},
pmid = {15812020}
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@article{lin230312,
title = {Production of rhamnolipids by Pseudomonas chlororaphis, a nonpathogenic bacterium.},
author = {Gunther NW, Nunez A, Fett W, Solaiman DK.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.5.2288-2293.2005},
pmid = {15870313}
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@article{lin230291,
title = {Enumeration of respiring Pseudomonas spp. in milk within 6 hours by fluorescence in situ hybridization following formazan reduction.},
author = {Kitaguchi A, Yamaguchi N, Nasu M.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.5.2748-2752.2005},
pmid = {15870367}
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@article{lin26655,
title = {L: -Stereoselective amino acid amidase with broad substrate specificity from Brevundimonas diminuta: characterization of a new member of the leucine aminopeptidase family.},
author = {Komeda H, Hariyama N, Asano Y},
journal = {Appl Microbiol Biotechnol},
year = {2005},
doi = {10.1007/s00253-005-0068-9},
pmid = {16001251}
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@article{lin374876,
title = {Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects.},
author = {Compant S, Duffy B, Nowak J, Clement C, Barka EA.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.9.4951-4959.2005},
pmid = {16151072}
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@article{lin374881,
title = {Novel lectin-like bacteriocins of biocontrol strain Pseudomonas fluorescens Pf-5.},
author = {Parret AH, Temmerman K, De Mot R.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.9.5197-5207.2005},
pmid = {16151105}
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@article{lin374886,
title = {Plasmid donor affects host range of promiscuous IncP-1beta plasmid pB10 in an activated-sludge microbial community.},
author = {De Gelder L, Vandecasteele FP, Brown CJ, Forney LJ, Top EM.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.9.5309-5317.2005},
pmid = {16151119}
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@article{lin230273,
title = {Recognition of individual genes in diverse microorganisms by cycling primed in situ amplification.},
author = {Kenzaka T, Tamaki S, Yamaguchi N, Tani K, Nasu M.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.11.7236-7244.2005},
pmid = {16269764}
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@article{lin26651,
title = {Synthesis, antibacterial and antifungal activity of some new pyridazinone metal complexes.},
author = {Sonmez M, Berber I, Akbas E},
journal = {Eur J Med Chem},
year = {2005},
doi = {10.1016/j.ejmech.2005.10.003},
pmid = {16293349}
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title = {L-selective amidase with extremely broad substrate specificity from Ochrobactrum anthropi NCIMB 40321.},
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year = {1985},
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year = {1991},
doi = {10.1128/aem.57.4.1082-1088.1991},
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doi = {10.1128/aem.57.12.3482-3488.1991},
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@article{lin230211,
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journal = {Appl Environ Microbiol},
year = {1992},
doi = {10.1128/aem.58.6.2053-2065.1992},
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title = {Purification and Characterization of an l-Aminopeptidase from Pseudomonas putida ATCC 12633.},
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journal = {BMC Evol Biol},
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title = {Highly sensitive real-time PCR for specific detection and quantification of Coxiella burnetii.},
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journal = {BMC Microbiol},
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title = {Effect of Two Plant Species, Flax (Linum usitatissinum L.) and Tomato (Lycopersicon esculentum Mill.), on the Diversity of Soilborne Populations of Fluorescent Pseudomonads.},
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doi = {10.1128/aem.61.3.1004-1012.1995},
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journal = {Appl Environ Microbiol},
year = {1995},
doi = {10.1128/aem.61.12.4258-4262.1995},
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@article{lin230360,
title = {Temporal Variation in Genetic Diversity and Structure of a Lotic Population of Burkholderia (Pseudomonas) cepacia.},
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journal = {Appl Environ Microbiol},
year = {1996},
doi = {10.1128/aem.62.5.1558-1562.1996},
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title = {Zinc sorption to three gram-negative bacteria: combined titration, modeling, and EXAFS study.},
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@article{lin230208,
title = {Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities.},
author = {Bathe S, Hausner M.},
journal = {BMC Microbiol},
year = {2006},
doi = {10.1186/1471-2180-6-54},
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@article{lin26646,
title = {[Mechanism of cyanide and thiocyanate decomposition by an association of Pseudomonas putida and Pseudomonas stutzeri strains].},
author = {Grigor'eva NV, Kondrat'eva TF, Krasil'nikova EN, Karavaiko GI},
journal = {Mikrobiologiia},
year = {2006},
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@article{lin26644,
title = {Identification of novel benzoylformate decarboxylases by growth selection.},
author = {Henning H, Leggewie C, Pohl M, Muller M, Eggert T, Jaeger KE},
journal = {Appl Environ Microbiol},
year = {2006},
doi = {10.1128/AEM.01541-06},
pmid = {17012586}
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@article{lin26643,
title = {Pseudomonas moraviensis sp. nov. and Pseudomonas vranovensis sp. nov., soil bacteria isolated on nitroaromatic compounds, and emended description of Pseudomonas asplenii.},
author = {Tvrzova L, Schumann P, Sproer C, Sedlacek I, Pacova Z, Sedo O, Zdrahal Z, Steffen M, Lang E},
journal = {Int J Syst Evol Microbiol},
year = {2006},
doi = {10.1099/ijs.0.63988-0},
pmid = {17082407}
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title = {Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies.},
author = {Ballerstedt H, Volkers RJ, Mars AE, Hallsworth JE, dos Santos VA, Puchalka J, van Duuren J, Eggink G, Timmis KN, de Bont JA, Wery J},
journal = {Appl Microbiol Biotechnol},
year = {2007},
doi = {10.1007/s00253-007-0914-z},
pmid = {17370070}
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@article{lin230276,
title = {Convergent peripheral pathways catalyze initial glucose catabolism in Pseudomonas putida: genomic and flux analysis.},
author = {del Castillo T, Ramos JL, Rodriguez-Herva JJ, Fuhrer T, Sauer U, Duque E.},
journal = {J Bacteriol},
year = {2007},
doi = {10.1128/jb.00203-07},
pmid = {17483213}
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@article{lin26638,
title = {A kinetics study on the biodegradation of synthetic wastewater simulating effluent from an advanced oxidation process using Pseudomonas putida CECT 324.},
author = {Martin MM, Perez JA, Fernandez FG, Sanchez JL, Lopez JL, Rodriguez SM},
journal = {J Hazard Mater},
year = {2007},
doi = {10.1016/j.jhazmat.2007.06.053},
pmid = {17646049}
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@article{lin230339,
title = {Cloning and transfer of the Salmonella pathogenicity island 2 type III secretion system for studies of a range of gram-negative genera.},
author = {Wilson JW, Coleman C, Nickerson CA.},
journal = {Appl Environ Microbiol},
year = {2007},
doi = {10.1128/aem.00952-07},
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@article{lin230283,
title = {Genetic analysis of the histidine utilization (hut) genes in Pseudomonas fluorescens SBW25.},
author = {Zhang XX, Rainey PB.},
journal = {Genetics},
year = {2007},
doi = {10.1534/genetics.107.075713},
pmid = {17717196}
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@article{lin26637,
title = {Modification of phospholipid composition in Pseudomonas putida A ATCC 12633 induced by contact with tetradecyltrimethylammonium.},
author = {Boeris PS, Domenech CE, Lucchesi GI},
journal = {J Appl Microbiol},
year = {2007},
doi = {10.1111/j.1365-2672.2007.03346.x},
pmid = {17897209}
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title = {Combined photo-Fenton and biological oxidation for pesticide degradation: effect of photo-treated intermediates on biodegradation kinetics.},
author = {Ballesteros Martin MM, Sanchez Perez JA, Acien Fernandez FG, Casas Lopez JL, Garcia-Ripoll AM, Arques A, Oller I, Malato Rodriguez S},
journal = {Chemosphere},
year = {2007},
doi = {10.1016/j.chemosphere.2007.08.027},
pmid = {17904613}
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title = {Isolation and characterization of a benzoylformate decarboxylase and a NAD+/NADP+-dependent benzaldehyde dehydrogenase involved in D-phenylglycine metabolism in Pseudomonas stutzeri ST-201.},
author = {Saehuan C, Rojanarata T, Wiyakrutta S, McLeish MJ, Meevootisom V},
journal = {Biochim Biophys Acta},
year = {2007},
doi = {10.1016/j.bbagen.2007.08.007},
pmid = {17916405}
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title = {Degradation of tetradecyltrimethylammonium by Pseudomonas putida A ATCC 12633 restricted by accumulation of trimethylamine is alleviated by addition of Al 3+ ions.},
author = {Liffourrena AS, Lopez FG, Salvano MA, Domenech CE, Lucchesi GI},
journal = {J Appl Microbiol},
year = {2007},
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pmid = {17927742}
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title = {Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida.},
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journal = {Int J Syst Evol Microbiol},
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title = {Degradation of alachlor and pyrimethanil by combined photo-Fenton and biological oxidation.},
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pmid = {18498778}
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journal = {Biotechnol Bioeng},
year = {1985},
doi = {10.1002/bit.260270913},
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title = {Factors affecting 2-hydroxypropiophenone formation by benzoylformate decarboxylase from Pseudomonas putida.},
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journal = {Biotechnol Bioeng},
year = {1992},
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@article{lin26626,
title = {Physiological role of phosphatidylcholine in the Pseudomonas putida A ATCC 12633 response to tetradecyltrimethylammonium bromide and aluminium.},
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journal = {Lett Appl Microbiol},
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@article{lin230210,
title = {Bacterial community dynamics during the application of a Myxococcus xanthus-inoculated culture medium used for consolidation of ornamental limestone.},
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journal = {Microb Ecol},
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title = {Pseudomonas putida A ATCC 12633 oxidizes trimethylamine aerobically via two different pathways.},
author = {Liffourrena AS, Salvano MA, Lucchesi GI},
journal = {Arch Microbiol},
year = {2010},
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@article{lin230308,
title = {Development of amplified fragment length polymorphism-derived functional strain-specific markers to assess the persistence of 10 bacterial strains in soil microcosms.},
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journal = {Appl Environ Microbiol},
year = {2010},
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@article{lin230280,
title = {Lacticin Q-mediated selective toxicity depending on physicochemical features of membrane components.},
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@article{lin230303,
title = {Elucidation of the regulon and cis-acting regulatory element of HrpB, the AraC-type regulator of a plant pathogen-like type III secretion system in Burkholderia pseudomallei.},
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journal = {J Bacteriol},
year = {2011},
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@article{lin26630,
title = {Utilization of phenylpropanoids by pseudomonas putida soil isolates and its probable taxonomic significance.},
author = {Nonaka K, Ohta H, Sato Y, Hosokawa K},
journal = {Microbes Environ},
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@article{lin230333,
title = {Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.},
author = {Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.},
journal = {Appl Environ Microbiol},
year = {2011},
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@article{lin230205,
title = {Optimization of fixation methods for observation of bacterial cell morphology and surface ultrastructures by atomic force microscopy.},
author = {Chao Y, Zhang T.},
journal = {Appl Microbiol Biotechnol},
year = {2011},
doi = {10.1007/s00253-011-3551-5},
pmid = {21881891}
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@article{lin26616,
title = {The phosphatidylcholine synthase of Pseudomonas putida A ATCC 12633 is responsible for the synthesis of phosphatidylcholine, which acts as a temporary reservoir for Al3+.},
author = {Boeris PS, Lucchesi GI},
journal = {Microbiology (Reading)},
year = {2012},
doi = {10.1099/mic.0.054072-0},
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@article{lin230336,
title = {BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay.},
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journal = {BMC Microbiol},
year = {2012},
doi = {10.1186/1471-2180-12-56},
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@article{lin374891,
title = {A multivalent adsorption apparatus explains the broad host range of phage phi92: a comprehensive genomic and structural analysis.},
author = {Schwarzer D, Buettner FF, Browning C, Nazarov S, Rabsch W, Bethe A, Oberbeck A, Bowman VD, Stummeyer K, Muhlenhoff M, Leiman PG, Gerardy-Schahn R.},
journal = {J Virol},
year = {2012},
doi = {10.1128/jvi.00801-12},
pmid = {22787233}
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@article{lin230204,
title = {Surface-enhanced Raman scattering (SERS) revealing chemical variation during biofilm formation: from initial attachment to mature biofilm.},
author = {Chao Y, Zhang T.},
journal = {Anal Bioanal Chem},
year = {2012},
doi = {10.1007/s00216-012-6225-y},
pmid = {22820905}
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@article{lin26613,
title = {Degradation of cationic surfactants using Pseudomonas putida A ATCC 12633 immobilized in calcium alginate beads.},
author = {Bergero MF, Lucchesi GI},
journal = {Biodegradation},
year = {2012},
doi = {10.1007/s10532-012-9592-3},
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@article{lin230275,
title = {Structural basis for outer membrane sugar uptake in pseudomonads.},
author = {van den Berg B.},
journal = {J Biol Chem},
year = {2012},
doi = {10.1074/jbc.m112.408518},
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@article{lin230268,
title = {Differential proteomics and physiology of Pseudomonas putida KT2440 under filament-inducing conditions.},
author = {Crabbe A, Leroy B, Wattiez R, Aertsen A, Leys N, Cornelis P, Van Houdt R.},
journal = {BMC Microbiol},
year = {2012},
doi = {10.1186/1471-2180-12-282},
pmid = {23186381}
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@article{lin230261,
title = {Live-cell dynamic sensing of Cd(2+) with a FRET-based indicator.},
author = {Chiu TY, Chen PH, Chang CL, Yang DM.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0065853},
pmid = {23776557}
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@article{lin230287,
title = {Characterization of maltocin P28, a novel phage tail-like bacteriocin from Stenotrophomonas maltophilia.},
author = {Liu J, Chen P, Zheng C, Huang YP.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.01648-13},
pmid = {23835182}
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@article{lin374869,
title = {Pseudomonas putida AlkA and AlkB proteins comprise different defense systems for the repair of alkylation damage to DNA - in vivo, in vitro, and in silico studies.},
author = {Mielecki D, Saumaa S, Wrzesinski M, Maciejewska AM, Zuchniewicz K, Sikora A, Piwowarski J, Nieminuszczy J, Kivisaar M, Grzesiuk E.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0076198},
pmid = {24098441}
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@article{lin374865,
title = {A moderate toxin, GraT, modulates growth rate and stress tolerance of Pseudomonas putida.},
author = {Tamman H, Ainelo A, Ainsaar K, Horak R.},
journal = {J Bacteriol},
year = {2014},
doi = {10.1128/jb.00851-13},
pmid = {24163334}
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@article{lin230209,
title = {Microbial environment affects innate immunity in two closely related earthworm species Eisenia andrei and Eisenia fetida.},
author = {Dvorak J, Mancikova V, Pizl V, Elhottova D, Silerova M, Roubalova R, Skanta F, Prochazkova P, Bilej M.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0079257},
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@article{lin26607,
title = {The Complete Genome Sequence of Pseudomonas putida NBRC 14164T Confirms High Intraspecies Variation.},
author = {Ohji S, Yamazoe A, Hosoyama A, Tsuchikane K, Ezaki T, Fujita N},
journal = {Genome Announc},
year = {2014},
doi = {10.1128/genomeA.00029-14},
pmid = {24526630}
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@article{lin26606,
title = {Pseudomonas hunanensis sp. nov., isolated from soil subjected to long-term manganese pollution.},
author = {Gao J, Li BY, Wang HH, Liu ZQ},
journal = {Curr Microbiol},
year = {2014},
doi = {10.1007/s00284-014-0545-4},
pmid = {24562759}
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@article{lin26604,
title = {Identification, cloning and biochemical characterization of Pseudomonas putida A (ATCC 12633) monooxygenase enzyme necessary for the metabolism of tetradecyltrimethylammonium bromide.},
author = {Liffourrena AS, Lucchesi GI},
journal = {Appl Biochem Biotechnol},
year = {2014},
doi = {10.1007/s12010-014-0862-x},
pmid = {24664234}
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@article{lin230319,
title = {Mutational and crystallographic analysis of l-amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813: Interconversion between oxidase and monooxygenase activities.},
author = {Matsui D, Im DH, Sugawara A, Fukuta Y, Fushinobu S, Isobe K, Asano Y.},
journal = {FEBS Open Bio},
year = {2014},
doi = {10.1016/j.fob.2014.02.002},
pmid = {24693490}
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@article{lin26603,
title = {Abatement of styrene waste gas emission by biofilter and biotrickling filter: comparison of packing materials and inoculation procedures.},
author = {Perez MC, Alvarez-Hornos FJ, Portune K, Gabaldon C},
journal = {Appl Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s00253-014-5773-9},
pmid = {24797312}
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@article{lin230285,
title = {Detection of food spoilage and pathogenic bacteria based on ligation detection reaction coupled to flow-through hybridization on membranes.},
author = {Bohme K, Cremonesi P, Severgnini M, Villa TG, Fernandez-No IC, Barros-Velazquez J, Castiglioni B, Calo-Mata P.},
journal = {Biomed Res Int},
year = {2014},
doi = {10.1155/2014/156323},
pmid = {24818128}
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@article{lin374903,
title = {New PCR-based open reading frame typing method for easy, rapid, and reliable identification of Acinetobacter baumannii international epidemic clones without performing multilocus sequence typing.},
author = {Suzuki M, Hosoba E, Matsui M, Arakawa Y.},
journal = {J Clin Microbiol},
year = {2014},
doi = {10.1128/jcm.01064-14},
pmid = {24899031}
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@article{lin374898,
title = {Investigating bacterial populations in styrene-degrading biofilters by 16S rDNA tag pyrosequencing.},
author = {Portune KJ, Perez MC, Alvarez-Hornos FJ, Gabaldon C.},
journal = {Appl Microbiol Biotechnol},
year = {2015},
doi = {10.1007/s00253-014-5868-3},
pmid = {24950754}
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@article{lin26601,
title = {Perturbation of the monomer-monomer interfaces of the benzoylformate decarboxylase tetramer.},
author = {Andrews FH, Rogers MP, Paul LN, McLeish MJ},
journal = {Biochemistry},
year = {2014},
doi = {10.1021/bi500081r},
pmid = {24956165}
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@article{lin26600,
title = {Coordinated response of phospholipids and acyl components of membrane lipids in Pseudomonas putida A (ATCC 12633) under stress caused by cationic surfactants.},
author = {Heredia RM, Boeris PS, Biasutti MA, Lopez GA, Paulucci NS, Lucchesi GI},
journal = {Microbiology (Reading)},
year = {2014},
doi = {10.1099/mic.0.081943-0},
pmid = {25280753}
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@article{lin374847,
title = {Draft genome sequence analysis of a Pseudomonas putida W15Oct28 strain with antagonistic activity to Gram-positive and Pseudomonas sp. pathogens.},
author = {Ye L, Hildebrand F, Dingemans J, Ballet S, Laus G, Matthijs S, Berendsen R, Cornelis P.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0110038},
pmid = {25369289}
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@article{lin230262,
title = {Metabolite profiling reveals abiotic stress tolerance in Tn5 mutant of Pseudomonas putida.},
author = {Chaudhry V, Bhatia A, Bharti SK, Mishra SK, Chauhan PS, Mishra A, Sidhu OP, Nautiyal CS.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0113487},
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title = {Tetrahydroisoquinolines affect the whole-cell phenotype of Mycobacterium tuberculosis by inhibiting the ATP-dependent MurE ligase.},
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title = {Development of two real-time multiplex PCR assays for the detection and quantification of eight key bacterial pathogens in lower respiratory tract infections.},
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journal = {Clin Microbiol Infect},
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title = {High-throughput screening for a moderately halophilic phenol-degrading strain and its salt tolerance response.},
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title = {On-chip cell lysis by antibacterial non-leaching reusable quaternary ammonium monolithic column.},
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journal = {Biomed Microdevices},
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title = {Release of outer membrane vesicles in Pseudomonas putida as a response to stress caused by cationic surfactants.},
author = {Marisa Heredia R, Sabrina Boeris P, Sebastian Liffourrena A, Fernanda Bergero M, Alberto Lopez G, Ines Lucchesi G},
journal = {Microbiology (Reading)},
year = {2016},
doi = {10.1099/mic.0.000265},
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title = {Engineering Modular Viral Scaffolds for Targeted Bacterial Population Editing.},
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journal = {Cell Syst},
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title = {Content of cardiolipin of the membrane and sensitivity to cationic surfactants in Pseudomonas putida.},
author = {Lopez GA, Heredia RM, Boeris PS, Lucchesi GI},
journal = {J Appl Microbiol},
year = {2016},
doi = {10.1111/jam.13238},
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@article{lin230240,
title = {PCR-Independent Detection of Bacterial Species-Specific 16S rRNA at 10 fM by a Pore-Blockage Sensor.},
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journal = {Biosensors (Basel)},
year = {2016},
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@article{lin26592,
title = {Biosorption of aluminum through the use of non-viable biomass of Pseudomonas putida.},
author = {Boeris PS, Agustin Mdel R, Acevedo DF, Lucchesi GI},
journal = {J Biotechnol},
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doi = {10.1016/j.jbiotec.2016.07.026},
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@article{lin374855,
title = {Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.},
author = {Koehorst JJ, Saccenti E, Schaap PJ, Martins Dos Santos VAP, Suarez-Diez M.},
journal = {F1000Res},
year = {2016},
doi = {10.12688/f1000research.9416.3},
pmid = {27703668}
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@article{lin230206,
title = {Effect of Different Metal Ions on the Biological Properties of Cefadroxil.},
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journal = {Pharmaceuticals (Basel)},
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doi = {10.3390/ph2030184},
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@article{lin26591,
title = {Characterization of Four New Distinct omega-Transaminases from Pseudomonas putida NBRC 14164 for Kinetic Resolution of Racemic Amines and Amino Alcohols.},
author = {Wu HL, Zhang JD, Zhang CF, Fan XJ, Chang HH, Wei WL},
journal = {Appl Biochem Biotechnol},
year = {2016},
doi = {10.1007/s12010-016-2263-9},
pmid = {27714638}
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@article{lin230272,
title = {Metabolic engineering of Corynebacterium glutamicum for enhanced production of 5-aminovaleric acid.},
author = {Shin JH, Park SH, Oh YH, Choi JW, Lee MH, Cho JS, Jeong KJ, Joo JC, Yu J, Park SJ, Lee SY.},
journal = {Microb Cell Fact},
year = {2016},
doi = {10.1186/s12934-016-0566-8},
pmid = {27717386}
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@article{lin374848,
title = {Comprehensive genomic and phenotypic metal resistance profile of Pseudomonas putida strain S13.1.2 isolated from a vineyard soil.},
author = {Chong TM, Yin WF, Chen JW, Mondy S, Grandclement C, Faure D, Dessaux Y, Chan KG.},
journal = {AMB Express},
year = {2016},
doi = {10.1186/s13568-016-0269-x},
pmid = {27730570}
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@article{lin374858,
title = {Evolutionary switches between two serine codon sets are driven by selection.},
author = {Rogozin IB, Belinky F, Pavlenko V, Shabalina SA, Kristensen DM, Koonin EV.},
journal = {Proc Natl Acad Sci U S A},
year = {2016},
doi = {10.1073/pnas.1615832113},
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@article{lin26589,
title = {A high-throughput microtiter plate assay for the discovery of active and enantioselective amino alcohol-specific transaminases.},
author = {Zhang JD, Wu HL, Meng T, Zhang CF, Fan XJ, Chang HH, Wei WL},
journal = {Anal Biochem},
year = {2016},
doi = {10.1016/j.ab.2016.11.015},
pmid = {27899283}
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@article{lin374890,
title = {Description of Immundisolibacter cernigliae gen. nov., sp. nov., a high-molecular-weight polycyclic aromatic hydrocarbon-degrading bacterium within the class Gammaproteobacteria, and proposal of Immundisolibacterales ord. nov. and Immundisolibacteraceae fam. nov.},
author = {Corteselli EM, Aitken MD, Singleton DR.},
journal = {Int J Syst Evol Microbiol},
year = {2017},
doi = {10.1099/ijsem.0.001714},
pmid = {27926817}
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@article{lin26588,
title = {Phylogenetic analysis reveals the taxonomically diverse distribution of the Pseudomonas putida group.},
author = {Yonezuka K, Shimodaira J, Tabata M, Ohji S, Hosoyama A, Kasai D, Yamazoe A, Fujita N, Ezaki T, Fukuda M},
journal = {J Gen Appl Microbiol},
year = {2016},
doi = {10.2323/jgam.2016.06.003},
pmid = {27989998}
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@article{lin26587,
title = {Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida.},
author = {Molina L, Geoffroy VA, Segura A, Udaondo Z, Ramos JL},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.02100},
pmid = {28082966}
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@article{lin230263,
title = {Novel Three-Component Phenazine-1-Carboxylic Acid 1,2-Dioxygenase in Sphingomonas wittichii DP58.},
author = {Zhao Q, Hu HB, Wang W, Huang XQ, Zhang XH.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.00133-17},
pmid = {28188209}
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@article{lin26586,
title = {Structure and mechanism of benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633, a member of the Class 3 aldehyde dehydrogenase superfamily.},
author = {Zahniser MPD, Prasad S, Kneen MM, Kreinbring CA, Petsko GA, Ringe D, McLeish MJ},
journal = {Protein Eng Des Sel},
year = {2017},
doi = {10.1093/protein/gzx015},
pmid = {28338942}
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@article{lin230248,
title = {Propagule pressure increase and phylogenetic diversity decrease community's susceptibility to invasion.},
author = {Ketola T, Saarinen K, Lindstrom L.},
journal = {BMC Ecol},
year = {2017},
doi = {10.1186/s12898-017-0126-z},
pmid = {28399832}
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@article{lin230207,
title = {Colonization patterns of Enterococcus cecorum in two different broiler production cycles detected with a newly developed quantitative real-time PCR.},
author = {Jung A, Petersen H, Teske L, Rautenschlein S.},
journal = {BMC Microbiol},
year = {2017},
doi = {10.1186/s12866-017-1021-7},
pmid = {28476097}
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@article{lin230256,
title = {A comparative study of utilization of single and mixed phenolic compounds by individual and mixed culture.},
author = {Tyagaturu Renukaprasad M, Ismailsab M, Reddy PV, Baburao K, Nayak AS, Karegoudar TB.},
journal = {3 Biotech},
year = {2017},
doi = {10.1007/s13205-017-0815-5},
pmid = {28669074}
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@article{lin374870,
title = {The influence of human exploration on the microbial community structure and ammonia oxidizing potential of the Su Bentu limestone cave in Sardinia, Italy.},
author = {Leuko S, Koskinen K, Sanna L, D'Angeli IM, De Waele J, Marcia P, Moissl-Eichinger C, Rettberg P.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0180700},
pmid = {28704427}
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@article{lin26584,
title = {Pseudomonas wadenswilerensis sp. nov. and Pseudomonas reidholzensis sp. nov., two novel species within the Pseudomonas putida group isolated from forest soil.},
author = {Frasson D, Opoku M, Picozzi T, Torossi T, Balada S, Smits THM, Hilber U},
journal = {Int J Syst Evol Microbiol},
year = {2017},
doi = {10.1099/ijsem.0.002035},
pmid = {28820109}
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@article{lin374859,
title = {Pyomelanin from Pseudoalteromonas lipolytica reduces biofouling.},
author = {Zeng Z, Guo XP, Cai X, Wang P, Li B, Yang JL, Wang X.},
journal = {Microb Biotechnol},
year = {2017},
doi = {10.1111/1751-7915.12773},
pmid = {28834245}
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@article{lin374850,
title = {Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages.},
author = {Magill DJ, Krylov VN, Shaburova OV, McGrath JW, Allen CCR, Quinn JP, Kulakov LA.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0184307},
pmid = {28877269}
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@article{lin230290,
title = {In Vitro Antibacterial Properties of Cefiderocol, a Novel Siderophore Cephalosporin, against Gram-Negative Bacteria.},
author = {Ito A, Sato T, Ota M, Takemura M, Nishikawa T, Toba S, Kohira N, Miyagawa S, Ishibashi N, Matsumoto S, Nakamura R, Tsuji M, Yamano Y.},
journal = {Antimicrob Agents Chemother},
year = {2018},
doi = {10.1128/aac.01454-17},
pmid = {29061741}
}
@article{lin374830,
title = {Synergistic effects of biogenic manganese oxide and Mn(II)-oxidizing bacterium Pseudomonas putida strain MnB1 on the degradation of 17 alpha-ethinylestradiol.},
author = {Tran TN, Kim DG, Ko SO.},
journal = {J Hazard Mater},
year = {2018},
doi = {10.1016/j.jhazmat.2017.10.045},
pmid = {29080488}
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@article{lin26582,
title = {Cloning, Expression and Purification of Pseudomonas putida ATCC12633 Creatinase.},
author = {Afshari E, Amini-Bayat Z, Hosseinkhani S, Bakhtiari N},
journal = {Avicenna J Med Biotechnol},
year = {2017},
pmid = {29090065}
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@article{lin374853,
title = {Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa.},
author = {Peter S, Oberhettinger P, Schuele L, Dinkelacker A, Vogel W, Dorfel D, Bezdan D, Ossowski S, Marschal M, Liese J, Willmann M.},
journal = {BMC Genomics},
year = {2017},
doi = {10.1186/s12864-017-4216-2},
pmid = {29126393}
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@article{lin230271,
title = {Redox-independent chromium isotope fractionation induced by ligand-promoted dissolution.},
author = {Saad EM, Wang X, Planavsky NJ, Reinhard CT, Tang Y.},
journal = {Nat Commun},
year = {2017},
doi = {10.1038/s41467-017-01694-y},
pmid = {29150598}
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@article{lin230274,
title = {Antibiotic-resistant bacteria in the guts of insects feeding on plants: prospects for discovering plant-derived antibiotics.},
author = {Ignasiak K, Maxwell A.},
journal = {BMC Microbiol},
year = {2017},
doi = {10.1186/s12866-017-1133-0},
pmid = {29191163}
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@article{lin230203,
title = {Quantitative Assessment of Antimicrobial Activity of PLGA Films Loaded with 4-Hexylresorcinol.},
author = {Kemme M, Heinzel-Wieland R.},
journal = {J Funct Biomater},
year = {2018},
doi = {10.3390/jfb9010004},
pmid = {29324696}
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@article{lin230277,
title = {A closer look at the antibiotic-resistant bacterial community found in urban wastewater treatment systems.},
author = {Tehrani AH, Gilbride KA.},
journal = {Microbiologyopen},
year = {2018},
doi = {10.1002/mbo3.589},
pmid = {29484827}
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@article{lin26580,
title = {Degradation of cationic surfactants using immobilized bacteria: Its effect on adsorption to activated sludge.},
author = {Bergero MF, Lucchesi GI},
journal = {J Biotechnol},
year = {2018},
doi = {10.1016/j.jbiotec.2018.03.003},
pmid = {29518462}
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@article{lin230311,
title = {Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6.},
author = {Agaras BC, Iriarte A, Valverde CF.},
journal = {PLoS One},
year = {2018},
doi = {10.1371/journal.pone.0194088},
pmid = {29538430}
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@article{lin26578,
title = {Alginate-perlite encapsulated Pseudomonas putida A (ATCC 12633) cells: Preparation, characterization and potential use as plant inoculants.},
author = {Liffourrena AS, Lucchesi GI},
journal = {J Biotechnol},
year = {2018},
doi = {10.1016/j.jbiotec.2018.04.019},
pmid = {29723546}
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@article{lin374902,
title = {Production and Characterization of Polyhydroxyalkanoate from Lignin Derivatives by Pandoraea sp. ISTKB.},
author = {Kumar M, Singhal A, Verma PK, Thakur IS.},
journal = {ACS Omega},
year = {2017},
doi = {10.1021/acsomega.7b01615},
pmid = {30023602}
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@article{lin26576,
title = {Characterization of pyrene degradation and metabolite identification by Basidioascus persicus and mineralization enhancement with bacterial-yeast co-culture.},
author = {Kamyabi A, Nouri H, Moghimi H},
journal = {Ecotoxicol Environ Saf},
year = {2018},
doi = {10.1016/j.ecoenv.2018.07.098},
pmid = {30075450}
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@article{lin26575,
title = {Genome Sequence Analysis of Two Pseudomonas putida Strains to Identify a 17-Hydroxylase Putatively Involved in Sparteine Degradation.},
author = {Detheridge AP, Griffith GW, Hopper DJ},
journal = {Curr Microbiol},
year = {2018},
doi = {10.1007/s00284-018-1573-2},
pmid = {30267141}
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@article{lin230267,
title = {Pseudomonas coronafaciens sp. nov., a new phytobacterial species diverse from Pseudomonas syringae.},
author = {Dutta B, Gitaitis R, Agarwal G, Coutinho T, Langston D.},
journal = {PLoS One},
year = {2018},
doi = {10.1371/journal.pone.0208271},
pmid = {30521563}
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@article{lin230253,
title = {A practical introduction to microbial molecular ecology through the use of isolation chips.},
author = {Alessi AM, Redeker KR, Chong JPJ.},
journal = {Ecol Evol},
year = {2018},
doi = {10.1002/ece3.4748},
pmid = {30619545}
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@article{lin374879,
title = {LlpB represents a second subclass of lectin-like bacteriocins.},
author = {Ghequire MGK, De Mot R.},
journal = {Microb Biotechnol},
year = {2019},
doi = {10.1111/1751-7915.13373},
pmid = {30702207}
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@article{lin26571,
title = {Production of medium chain length polyhydroxyalkanoate from acetate by engineered Pseudomonas putida KT2440.},
author = {Yang S, Li S, Jia X},
journal = {J Ind Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s10295-019-02159-5},
pmid = {30864026}
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@article{lin230260,
title = {Transcriptional organization, regulation and functional analysis of flhF and fleN in Pseudomonas putida.},
author = {Navarrete B, Leal-Morales A, Serrano-Ron L, Sarrio M, Jimenez-Fernandez A, Jimenez-Diaz L, Lopez-Sanchez A, Govantes F.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0214166},
pmid = {30889223}
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@article{lin374844,
title = {omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection.},
author = {Tiffany CR, Baumler AJ.},
journal = {Microbiol Resour Announc},
year = {2019},
doi = {10.1128/mra.00129-19},
pmid = {30975806}
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@article{lin230264,
title = {Mortality causes universal changes in microbial community composition.},
author = {Abreu CI, Friedman J, Andersen Woltz VL, Gore J.},
journal = {Nat Commun},
year = {2019},
doi = {10.1038/s41467-019-09925-0},
pmid = {31073166}
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@article{lin26570,
title = {Pseudomonas hutmensis sp. nov., a New Fluorescent Member of Pseudomonas putida Group.},
author = {Xiang W, Chen S, Tian D, Huang C, Gao T},
journal = {Curr Microbiol},
year = {2019},
doi = {10.1007/s00284-019-01701-z},
pmid = {31079192}
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@article{lin374872,
title = {Microbially Enhanced Oil Recovery by Alkylbenzene-Oxidizing Nitrate-Reducing Bacteria.},
author = {Suri N, Gassara F, Stanislav P, Voordouw G.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.01243},
pmid = {31275254}
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@article{lin230278,
title = {Propidium monoazide-quantitative polymerase chain reaction (PMA-qPCR) assay for rapid detection of viable and viable but non-culturable (VBNC) Pseudomonas aeruginosa in swimming pools.},
author = {Golpayegani A, Douraghi M, Rezaei F, Alimohammadi M, Nodehi RN.},
journal = {J Environ Health Sci Eng},
year = {2019},
doi = {10.1007/s40201-019-00359-w},
pmid = {31297217}
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@article{lin230254,
title = {Desiccation-induced viable but nonculturable state in Pseudomonas putida KT2440, a survival strategy.},
author = {Pazos-Rojas LA, Munoz-Arenas LC, Rodriguez-Andrade O, Lopez-Cruz LE, Lopez-Ortega O, Lopes-Olivares F, Luna-Suarez S, Baez A, Morales-Garcia YE, Quintero-Hernandez V, Villalobos-Lopez MA, De la Torre J, Munoz-Rojas J.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0219554},
pmid = {31323038}
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@article{lin374833,
title = {Investigation and Assessment for an effective approach to the reclamation of Polycyclic Aromatic Hydrocarbon (PAHs) contaminated site: SIN Bagnoli, Italy.},
author = {Guarino C, Zuzolo D, Marziano M, Conte B, Baiamonte G, Morra L, Benotti D, Gresia D, Stacul ER, Cicchella D, Sciarrillo R.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-48005-7},
pmid = {31395938}
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@article{lin230242,
title = {Metabolite-mediated modelling of microbial community dynamics captures emergent behaviour more effectively than species-species modelling.},
author = {Brunner JD, Chia N.},
journal = {J R Soc Interface},
year = {2019},
doi = {10.1098/rsif.2019.0423},
pmid = {31640497}
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@article{lin230284,
title = {Diversity and Horizontal Transfer of Antarctic Pseudomonas spp. Plasmids.},
author = {Romaniuk K, Styczynski M, Decewicz P, Buraczewska O, Uhrynowski W, Fondi M, Wolosiewicz M, Szuplewska M, Dziewit L.},
journal = {Genes (Basel)},
year = {2019},
doi = {10.3390/genes10110850},
pmid = {31661808}
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@article{lin230246,
title = {How to accurately assess surfactant biodegradation-impact of sorption on the validity of results.},
author = {Cierniak D, Wozniak-Karczewska M, Parus A, Wyrwas B, Loibner AP, Heipieper HJ, Lawniczak L, Chrzanowski L.},
journal = {Appl Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s00253-019-10202-9},
pmid = {31729532}
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@article{lin374834,
title = {Functional Characterization and Genomic Analysis of the Chlorantraniliprole-Degrading Strain Pseudomonas Sp. GW13.},
author = {Gao W, Li D, You H.},
journal = {Bioengineering (Basel)},
year = {2019},
doi = {10.3390/bioengineering6040106},
pmid = {31757031}
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@article{lin230251,
title = {Terpenoids in the Essential Oil and Concentrated Aromatic Products Obtained from Nicotiana glutinosa L. Leaves.},
author = {Popova V, Ivanova T, Stoyanova A, Nikolova V, Hristeva T, Gochev V, Yonchev Y, Nikolov N, Zheljazkov VD.},
journal = {Molecules},
year = {2019},
doi = {10.3390/molecules25010030},
pmid = {31861797}
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@article{lin230247,
title = {Customized antimicrobial efficacy tests offer superior evaluation of growth inhibitor efficacy for liquid microbial products.},
author = {Gorsuch JP, Jones Z.},
journal = {Heliyon},
year = {2020},
doi = {10.1016/j.heliyon.2020.e03419},
pmid = {32140579}
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@article{lin374840,
title = {Resolution of alkaloid racemate: a novel microbial approach for the production of enantiopure lupanine via industrial wastewater valorization.},
author = {Parmaki S, Tsipa A, Vasquez MI, Goncalves JMJ, Hadjiadamou I, Ferreira FC, Afonso CAM, Drouza C, Koutinas M.},
journal = {Microb Cell Fact},
year = {2020},
doi = {10.1186/s12934-020-01324-1},
pmid = {32169079}
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@article{lin230307,
title = {Recent Advances in Metabolically Engineered Microorganisms for the Production of Aromatic Chemicals Derived From Aromatic Amino Acids.},
author = {Shen YP, Niu FX, Yan ZB, Fong LS, Huang YB, Liu JZ.},
journal = {Front Bioeng Biotechnol},
year = {2020},
doi = {10.3389/fbioe.2020.00407},
pmid = {32432104}
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@article{lin230259,
title = {Microbial communities display alternative stable states in a fluctuating environment.},
author = {Abreu CI, Andersen Woltz VL, Friedman J, Gore J.},
journal = {PLoS Comput Biol},
year = {2020},
doi = {10.1371/journal.pcbi.1007934},
pmid = {32453781}
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@article{lin374823,
title = {Efficient removal of 17alpha-ethinylestradiol from secondary wastewater treatment effluent by a biofilm process incorporating biogenic manganese oxide and Pseudomonas putida strain MnB1.},
author = {Tran TN, Kim DG, Ko SO.},
journal = {J Hazard Mater},
year = {2020},
doi = {10.1016/j.jhazmat.2020.122810},
pmid = {32516724}
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@article{lin374856,
title = {Bioflocculants Produced by Bacterial Strains Isolated from Palm Oil Mill Effluent for Application in the Removal of Eriochrome Black T Dye from Water.},
author = {Abbas SZ, Yong YC, Ali Khan M, Siddiqui MR, Hakami AAH, Alshareef SA, Otero M, Rafatullah M.},
journal = {Polymers (Basel)},
year = {2020},
doi = {10.3390/polym12071545},
pmid = {32668712}
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@article{lin374851,
title = {Bactericidal Effect of Entomopathogenic Bacterium Pseudomonas entomophila Against Xanthomonas citri Reduces Citrus Canker Disease Severity.},
author = {Villamizar S, Ferro JA, Caicedo JC, Alves LMC.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01431},
pmid = {32670251}
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@article{lin374854,
title = {Manganese-contaminated groundwater treatment by novel bacterial isolates: kinetic study and mechanism analysis using synchrotron-based techniques.},
author = {Therdkiattikul N, Ratpukdi T, Kidkhunthod P, Chanlek N, Siripattanakul-Ratpukdi S.},
journal = {Sci Rep},
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doi = {10.1038/s41598-020-70355-w},
pmid = {32770016}
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@article{lin230244,
title = {Industrial biotechnology of Pseudomonas putida: advances and prospects.},
author = {Weimer A, Kohlstedt M, Volke DC, Nikel PI, Wittmann C.},
journal = {Appl Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s00253-020-10811-9},
pmid = {32789744}
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@article{lin26577,
title = {Development of a Pseudomonas putida cell-free protein synthesis platform for rapid screening of gene regulatory elements.},
author = {Wang H, Li J, Jewett MC},
journal = {Synth Biol (Oxf)},
year = {2018},
doi = {10.1093/synbio/ysy003},
pmid = {32995512}
}
@article{lin374845,
title = {Microbially Induced Mineralization of Layered Mn Oxides Electroactive in Li Batteries.},
author = {Galezowski L, Recham N, Larcher D, Miot J, Skouri-Panet F, Guyot F.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.02031},
pmid = {33013746}
}
@article{lin374857,
title = {Pseudomonas species isolated via high-throughput screening significantly protect cotton plants against verticillium wilt.},
author = {Tao X, Zhang H, Gao M, Li M, Zhao T, Guan X.},
journal = {AMB Express},
year = {2020},
doi = {10.1186/s13568-020-01132-1},
pmid = {33118043}
}
@article{lin374861,
title = {In silico design and validation of a highly degenerate primer pair: a systematic approach.},
author = {Chukwuemeka PO, Umar HI, Olukunle OF, Oretade OM, Olowosoke CB, Akinsola EO, Elabiyi MO, Kurmi UG, Eigbe JO, Oyelere BR, Isunu LE, Oretade OJ.},
journal = {J Genet Eng Biotechnol},
year = {2020},
doi = {10.1186/s43141-020-00086-y},
pmid = {33205353}
}
@article{lin374860,
title = {Endolysins from Antarctic Pseudomonas Display Lysozyme Activity at Low Temperature.},
author = {Orlando M, Pucciarelli S, Lotti M.},
journal = {Mar Drugs},
year = {2020},
doi = {10.3390/md18110579},
pmid = {33233712}
}
@article{lin374880,
title = {Microbiologically Induced Carbonate Precipitation in the Restoration and Conservation of Cultural Heritage Materials.},
author = {Ortega-Villamagua E, Gudino-Gomezjurado M, Palma-Cando A.},
journal = {Molecules},
year = {2020},
doi = {10.3390/molecules25235499},
pmid = {33255349}
}
@article{lin374827,
title = {Identification of the Gene Responsible for Lignin-Derived Low-Molecular-Weight Compound Catabolism in Pseudomonas sp. Strain LLC-1.},
author = {Hirose J, Tsukimata R, Miyatake M, Yokoi H.},
journal = {Genes (Basel)},
year = {2020},
doi = {10.3390/genes11121416},
pmid = {33260964}
}
@article{lin26563,
title = {Interactions Between Brassicae napus and Pseudomonas putida (Strain ATCC12633) and Characterization of Volatile Organic Compounds Produced by the Bacterium.},
author = {Pahlavan Yali M, Hajmalek M},
journal = {Curr Microbiol},
year = {2021},
doi = {10.1007/s00284-020-02335-2},
pmid = {33403487}
}
@article{lin374838,
title = {Metabolic engineering of Pseudomonas putida for production of vanillylamine from lignin-derived substrates.},
author = {Manfrao-Netto JHC, Lund F, Muratovska N, Larsson EM, Parachin NS, Carlquist M.},
journal = {Microb Biotechnol},
year = {2021},
doi = {10.1111/1751-7915.13764},
pmid = {33533574}
}
@article{lin230269,
title = {Interspecies bacterial competition regulates community assembly in the C. elegans intestine.},
author = {Ortiz A, Vega NM, Ratzke C, Gore J.},
journal = {ISME J},
year = {2021},
doi = {10.1038/s41396-021-00910-4},
pmid = {33589765}
}
@article{lin230270,
title = {Characterization and Regulation of the Acetolactate Synthase Genes Involved in Acetoin Biosynthesis in Acetobacter pasteurianus.},
author = {Zhao J, Meng Z, Ma X, Zhao S, An Y, Xiao Z.},
journal = {Foods},
year = {2021},
doi = {10.3390/foods10051013},
pmid = {34066556}
}
@article{lin26597,
title = {Engineering Escherichia coli for renewable benzyl alcohol production.},
author = {Pugh S, McKenna R, Halloum I, Nielsen DR},
journal = {Metab Eng Commun},
year = {2015},
doi = {10.1016/j.meteno.2015.06.002},
pmid = {34150507}
}
@article{lin374904,
title = {Bacterial transfer from Pristionchus entomophagus nematodes to the invasive ant Myrmica rubra and the potential for colony mortality in coastal Maine.},
author = {Ishaq SL, Hotopp A, Silverbrand S, Dumont JE, Michaud A, MacRae JD, Stock SP, Groden E.},
journal = {iScience},
year = {2021},
doi = {10.1016/j.isci.2021.102663},
pmid = {34169239}
}
@article{lin230241,
title = {Functional genomics study of Pseudomonas putida to determine traits associated with avoidance of a myxobacterial predator.},
author = {Akbar S, Stevens DC.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-96046-8},
pmid = {34385565}
}
@article{lin374843,
title = {Pseudomonas palmensis sp. nov., a Novel Bacterium Isolated From Nicotiana glauca Microbiome: Draft Genome Analysis and Biological Potential for Agriculture.},
author = {Gutierrez-Albanchez E, Garcia-Villaraco A, Lucas JA, Horche I, Ramos-Solano B, Gutierrez-Manero FJ.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.672751},
pmid = {34489881}
}
@article{lin374837,
title = {Draft genome sequence data of a 4-nitrophenol- degrading bacterium, Pseudomonas alloputida strain PNP.},
author = {Arora PK, Saroj RS, Mishra R, Omar RA, Kumari P, Srivastava A, Garg SK, Singh VP.},
journal = {Data Brief},
year = {2021},
doi = {10.1016/j.dib.2021.107390},
pmid = {34589566}
}
@article{lin230265,
title = {Bioremediation potential of Pseudomonas genus isolates from residual water, capable of tolerating lead through mechanisms of exopolysaccharide production and biosorption.},
author = {Velez JMB, Martinez JG, Ospina JT, Agudelo SO.},
journal = {Biotechnol Rep (Amst)},
year = {2021},
doi = {10.1016/j.btre.2021.e00685},
pmid = {34765463}
}
@article{lin374841,
title = {Bactericidal Effect of Pseudomonas oryziphila sp. nov., a Novel Pseudomonas Species Against Xanthomonas oryzae Reduces Disease Severity of Bacterial Leaf Streak of Rice.},
author = {Yang R, Li S, Li Y, Yan Y, Fang Y, Zou L, Chen G.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.759536},
pmid = {34803984}
}
@article{lin374831,
title = {Transcriptional Regulation of the Creatine Utilization Genes of Corynebacterium glutamicum ATCC 14067 by AmtR, a Central Nitrogen Regulator.},
author = {Zhang H, Ouyang Z, Zhao N, Han S, Zheng S.},
journal = {Front Bioeng Biotechnol},
year = {2022},
doi = {10.3389/fbioe.2022.816628},
pmid = {35223787}
}
@article{lin374849,
title = {Characterization and Demonstration of Mock Communities as Control Reagents for Accurate Human Microbiome Community Measurements.},
author = {Tourlousse DM, Narita K, Miura T, Ohashi A, Matsuda M, Ohyama Y, Shimamura M, Furukawa M, Kasahara K, Kameyama K, Saito S, Goto M, Shimizu R, Mishima R, Nakayama J, Hosomi K, Kunisawa J, Terauchi J, Sekiguchi Y, Kawasaki H.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.01915-21},
pmid = {35234490}
}
@article{lin230234,
title = {Antimicrobial Activity of Red Alga Flour (Gelidium sp.) and Its Effect on Quality Retention of Scomber scombrus during Refrigerated Storage.},
author = {Miranda JM, Trigo M, Barros-Velazquez J, Aubourg SP.},
journal = {Foods},
year = {2022},
doi = {10.3390/foods11070904},
pmid = {35406992}
}
@article{lin374835,
title = {Pseudomonas putida and its close relatives: mixing and mastering the perfect tune for plants.},
author = {Costa-Gutierrez SB, Adler C, Espinosa-Urgel M, de Cristobal RE.},
journal = {Appl Microbiol Biotechnol},
year = {2022},
doi = {10.1007/s00253-022-11881-7},
pmid = {35488932}
}
@article{lin230257,
title = {Diauxic lags explain unexpected coexistence in multi-resource environments.},
author = {Bloxham B, Lee H, Gore J.},
journal = {Mol Syst Biol},
year = {2022},
doi = {10.15252/msb.202110630},
pmid = {35507445}
}
@article{lin374825,
title = {First Identification of a Multidrug-Resistant Pseudomonas putida Co-Carrying Five beta-Lactam Resistance Genes Recovered from a Urinary Tract Infection in China.},
author = {Bao D, Huang L, Yan J, Li Y, Ruan Z, Jiang T.},
journal = {Infect Drug Resist},
year = {2022},
doi = {10.2147/idr.s366567},
pmid = {35510158}
}
@article{lin230250,
title = {Development of a fluorescence assay for highly sensitive detection of Pseudomonas aeruginosa based on an aptamer-carbon dots/graphene oxide system.},
author = {Wang H, Chi Z, Cong Y, Wang Z, Jiang F, Geng J, Zhang P, Ju P, Dong Q, Liu C.},
journal = {RSC Adv},
year = {2018},
doi = {10.1039/c8ra04819c},
pmid = {35547676}
}
@article{lin374839,
title = {Combined Process of Biogenic Manganese Oxide and Manganese-Oxidizing Microalgae for Improved Diclofenac Removal Performance: Two Different Kinds of Synergistic Effects.},
author = {Wang Q, Liao C, Zhao J, Zeng G, Liu W, Gao P, Sun D, Du J.},
journal = {Toxics},
year = {2022},
doi = {10.3390/toxics10050230},
pmid = {35622643}
}
@article{lin230258,
title = {High-Resolution Metagenomics of Human Gut Microbiota Generated by Nanopore and Illumina Hybrid Metagenome Assembly.},
author = {Ye L, Dong N, Xiong W, Li J, Li R, Heng H, Chan EWC, Chen S.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.801587},
pmid = {35633679}
}
@article{lin374897,
title = {Architectural Features and Resistance to Food-Grade Disinfectants in Listeria monocytogenes-Pseudomonas spp. Dual-Species Biofilms.},
author = {Rodriguez-Lopez P, Rodriguez-Herrera JJ, Lopez Cabo M.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.917964},
pmid = {35756028}
}
@article{lin57832,
title = {Dissolved iron released from nanoscale zero-valent iron (nZVI) activates the defense system in bacterium Pseudomonas putida, leading to high tolerance to oxidative stress.},
author = {Yeap CSY, Nguyen NHA, Spanek R, Too CC, Benes V, Provaznik J, Cernik M, Sevcu A},
journal = {J Hazard Mater},
year = {2022},
doi = {10.1016/j.jhazmat.2022.129627},
pmid = {35872458}
}
@article{lin230236,
title = {The influence of self-cycling fermentation long- and short-cycle schemes on Saccharomyces cerevisiae and Escherichia coli.},
author = {Tan Y, Stein LY, Sauvageau D.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-16831-x},
pmid = {35915208}
}
@article{lin230225,
title = {Biodegradation of high molecular weight hydrocarbons under saline condition by halotolerant Bacillus subtilis and its mixed cultures with Pseudomonas species.},
author = {Ghorbannezhad H, Moghimi H, Dastgheib SMM.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-17001-9},
pmid = {35918482}
}
@article{lin374818,
title = {Antimicrobial Activity of Polysorbate 80-iodine Complex: Polysorbate 80 Firmly Retains Iodine.},
author = {Yano S, Terada S, Fukushi M, Otsuka Y, Mizunuma S, Asakura S, Kawai T, Konno H, Endo M, Nonomura Y.},
journal = {J Oleo Sci},
year = {2022},
doi = {10.5650/jos.ess22115},
pmid = {36198581}
}
@article{lin230239,
title = {Estimating microbial population data from optical density.},
author = {Mira P, Yeh P, Hall BG.},
journal = {PLoS One},
year = {2022},
doi = {10.1371/journal.pone.0276040},
pmid = {36228033}
}
@article{lin230279,
title = {Phage-resistant Pseudomonas aeruginosa against a novel lytic phage JJ01 exhibits hypersensitivity to colistin and reduces biofilm production.},
author = {Wannasrichan W, Htoo HH, Suwansaeng R, Pogliano J, Nonejuie P, Chaikeeratisak V.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1004733},
pmid = {36274728}
}
@article{lin374878,
title = {Highlighting Bacteria with Calcifying Abilities Suitable to Improve Mortar Properties.},
author = {Raut I, Constantin M, Petre I, Raduly M, Radu N, Gurban AM, Doni M, Alexandrescu E, Nicolae CA, Jecu L.},
journal = {Materials (Basel)},
year = {2022},
doi = {10.3390/ma15207259},
pmid = {36295324}
}
@article{lin374832,
title = {Emerging and re-emerging KPC-producing hypervirulent Pseudomonas aeruginosa ST697 and ST463 between 2010 and 2021.},
author = {Zhang B, Xu X, Song X, Wen Y, Zhu Z, Lv J, Xie X, Chen L, Tang YW, Du H.},
journal = {Emerg Microbes Infect},
year = {2022},
doi = {10.1080/22221751.2022.2140609},
pmid = {36314239}
}
@article{lin230202,
title = {In vitro study of the ecotoxicological risk of methylisothiazolinone and chloroxylenol towards soil bacteria.},
author = {Nowak-Lange M, Niedzialkowska K, Bernat P, Lisowska K.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-22981-9},
pmid = {36352006}
}
@article{lin230235,
title = {Cosmetic Preservatives: Hazardous Micropollutants in Need of Greater Attention?},
author = {Nowak-Lange M, Niedzialkowska K, Lisowska K.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms232214495},
pmid = {36430973}
}
@article{lin230227,
title = {Phage Therapy for Mosquito Larval Control: a Proof-of-Principle Study.},
author = {Tikhe CV, Dimopoulos G.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.03017-22},
pmid = {36445694}
}
@article{lin230401,
title = {Revealing oxidative pentose metabolism in new Pseudomonas putida isolates.},
author = {Park MR, Gauttam R, Fong B, Chen Y, Lim HG, Feist AM, Mukhopadhyay A, Petzold CJ, Simmons BA, Singer SW.},
journal = {Environ Microbiol},
year = {2023},
doi = {10.1111/1462-2920.16296},
pmid = {36465038}
}
@article{lin374816,
title = {The Full Genome Sequences of Pseudomonas sp. Strain MM221 and Pseudoarthrobacter sp. Strain MM222, Isolated from a Meadow in Bielefeld, Germany.},
author = {Eisenhut M, Hawrylo M, Trevlopoulou K, Fingerhut H, Niemann S, Brokate L, Kniekamp N, Grenda CF, Guttler M, Wobbe L, Brautigam A, Frommer B.},
journal = {Microbiol Resour Announc},
year = {2023},
doi = {10.1128/mra.01184-22},
pmid = {36598234}
}
@article{lin374817,
title = {Complete Genome Sequences of Pseudomonas sp. Strains MM223 and MM227 and Rheinheimera sp. Strain MM224, Isolated from a Pond Edge in Bielefeld, Germany.},
author = {Frommer B, Folchert T, Witschel AL, Reddeker M, Hauck MAR, Anderle N, Schade VSE, Zagami L, Rieks M, Wobbe L, Brautigam A, Eisenhut M.},
journal = {Microbiol Resour Announc},
year = {2023},
doi = {10.1128/mra.01185-22},
pmid = {36602347}
}
@article{lin230232,
title = {Development of genetic tools for heterologous protein expression in a pentose-utilizing environmental isolate of Pseudomonas putida.},
author = {Gauttam R, Eng T, Zhao Z, Ul Ain Rana Q, Simmons BA, Yoshikuni Y, Mukhopadhyay A, Singer SW.},
journal = {Microb Biotechnol},
year = {2023},
doi = {10.1111/1751-7915.14205},
pmid = {36691869}
}
@article{lin230238,
title = {Measurement of Minute Liquid Volumes of Chiral Molecules Using In-Fiber Polarimetry.},
author = {Schorn F, Essert A, Zhong Y, Abdullayev S, Castiglione K, Haumann M, Joly NY.},
journal = {Anal Chem},
year = {2023},
doi = {10.1021/acs.analchem.2c03347},
pmid = {36720470}
}
@article{lin230243,
title = {Phosphate and potash solubilizing bacteria from Moroccan phosphate mine showing antagonism to bacterial canker agent and inducing effective tomato growth promotion.},
author = {Bouizgarne B, Bakki M, Boutasknit A, Banane B, El Ouarrat H, Ait El Maalem S, Amenzou A, Ghousmi A, Meddich A.},
journal = {Front Plant Sci},
year = {2023},
doi = {10.3389/fpls.2023.970382},
pmid = {36968412}
}
@article{lin374829,
title = {Biologically Assisted One-Step Synthesis of Electrode Materials for Li-Ion Batteries.},
author = {Galezowski L, Recham N, Larcher D, Miot J, Skouri-Panet F, Ahouari H, Guyot F.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11030603},
pmid = {36985177}
}
@article{lin230245,
title = {A Plant Biostimulant from Ascophyllum nodosum Potentiates Plant Growth Promotion and Stress Protection Activity of Pseudomonas protegens CHA0.},
author = {Patel JS, Selvaraj V, More P, Bahmani R, Borza T, Prithiviraj B.},
journal = {Plants (Basel)},
year = {2023},
doi = {10.3390/plants12061208},
pmid = {36986897}
}
@article{lin374896,
title = {Antagonistic Toxic Effects of Surfactants Mixtures to Bacteria Pseudomonas putida and Marine Microalgae Phaeodactylum tricornutum.},
author = {Rios F, Lechuga M, Lobato-Guarnido I, Fernandez-Serrano M.},
journal = {Toxics},
year = {2023},
doi = {10.3390/toxics11040344},
pmid = {37112571}
}
@article{lin230228,
title = {Development of a real-time loop-mediated isothermal amplification method for monitoring Pseudomonas lurida in raw milk throughout the year of pasture.},
author = {Zhang S, Hu L, Xue Y, Zhang D, Zhang Y, Wang S.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1133077},
pmid = {37125188}
}
@article{lin230219,
title = {Optimized enantioselective (S)-2-hydroxypropiophenone synthesis by free- and encapsulated-resting cells of Pseudomonas putida.},
author = {Kordesedehi R, Asadollahi MA, Shahpiri A, Biria D, Nikel PI.},
journal = {Microb Cell Fact},
year = {2023},
doi = {10.1186/s12934-023-02073-7},
pmid = {37131175}
}
@article{lin230255,
title = {Stress-induced metabolic exchanges between complementary bacterial types underly a dynamic mechanism of inter-species stress resistance.},
author = {Amarnath K, Narla AV, Pontrelli S, Dong J, Reddan J, Taylor BR, Caglar T, Schwartzman J, Sauer U, Cordero OX, Hwa T.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-38913-8},
pmid = {37258505}
}
@article{lin374822,
title = {Genomic Reclassification and Phenotypic Characterization of Pseudomonas putida Strains Deposited in Japanese Culture Collections.},
author = {Morohoshi T, Yaguchi N, Someya N.},
journal = {Microbes Environ},
year = {2023},
doi = {10.1264/jsme2.me23019},
pmid = {37286511}
}
@article{lin374810,
title = {Biohybrids: Textile fibres provide scaffolds and highways for microbial translocation.},
author = {Sherry A, Dell'Agnese BM, Scott J.},
journal = {Front Bioeng Biotechnol},
year = {2023},
doi = {10.3389/fbioe.2023.1188965},
pmid = {37383521}
}
@article{lin374846,
title = {Comparative genomics of the proteostasis network in extreme acidophiles.},
author = {Izquierdo-Fiallo K, Munoz-Villagran C, Orellana O, Sjoberg R, Levican G.},
journal = {PLoS One},
year = {2023},
doi = {10.1371/journal.pone.0291164},
pmid = {37682893}
}
@article{lin230220,
title = {Antimicrobial activity of Paenarthrobacter nicotinovorans.},
author = {Kakol J, Vang M, Sausen D, Steeno T, Kolokithas A.},
journal = {MicroPubl Biol},
year = {2023},
doi = {10.17912/micropub.biology.000921},
pmid = {37705710}
}
@article{lin230230,
title = {Dual-Temperature Microbiological Control of Cellular Products: A Potential Impact for Bacterial Screening of Platelet Concentrates?},
author = {Vollmer T, Knabbe C, Dreier J.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11092350},
pmid = {37764194}
}
@article{lin374815,
title = {Draft genome sequence of Pseudomonas sp. ER28, a cyclohexane pentanoic acid degrader isolated from oil sands process-affected water from Alberta, Canada.},
author = {Goff KL, Gauthier J, Gieg LM, Kukavica-Ibrulj I, Ramos-Padron E, Lewenza S, Levesque RC.},
journal = {Microbiol Resour Announc},
year = {2023},
doi = {10.1128/mra.00651-23},
pmid = {37874142}
}
@article{lin374824,
title = {Specific Gene Expression in Pseudomonas Putida U Shows New Alternatives for Cadaverine and Putrescine Catabolism.},
author = {Getino L, Chamizo-Ampudia A, Martin JL, Luengo JM, Barreiro C, Olivera ER.},
journal = {Genes (Basel)},
year = {2023},
doi = {10.3390/genes14101897},
pmid = {37895246}
}
@article{lin374888,
title = {Microbial consortia degrade several widely used organic UV filters, but a number of hydrophobic filters remain recalcitrant to biodegradation.},
author = {Fagervold SK, Rohee C, Lebaron P.},
journal = {Environ Sci Pollut Res Int},
year = {2023},
doi = {10.1007/s11356-023-31063-w},
pmid = {38010544}
}
@article{lin374842,
title = {Identification and specificity validation of unique and antimicrobial resistance genes to trace suspected pathogenic AMR bacteria and to monitor the development of AMR in non-AMR strains in the environment and clinical settings.},
author = {Rekadwad BN, Pramod N, Rao MPN, Hashem A, Avila-Quezada GD, Abd Allah EF.},
journal = {Saudi J Biol Sci},
year = {2023},
doi = {10.1016/j.sjbs.2023.103869},
pmid = {38058762}
}
@article{lin230215,
title = {Recombinant Pseudomonas growing on non-natural fluorinated substrates shows stress but overall tolerance to cytoplasmically released fluoride anion.},
author = {Dodge AG, Thoma CJ, O'Connor MR, Wackett LP.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.02785-23},
pmid = {38063407}
}
@article{lin374900,
title = {Thymus zygis, Valuable Antimicrobial (In Vitro and In Situ) and Antibiofilm Agent with Potential Antiproliferative Effects.},
author = {Vukic MD, Cmikova N, Hsouna AB, Saad RB, Garzoli S, Schwarzova M, Vukovic NL, Obradovic AD, Matic MM, Waszkiewicz-Robak B, Kluz MI, Kacaniova M.},
journal = {Plants (Basel)},
year = {2023},
doi = {10.3390/plants12233920},
pmid = {38068556}
}
@article{lin230221,
title = {Genome sequence and characterization of a novel Pseudomonas putida phage, MiCath.},
author = {Jaryenneh J, Schoeniger JS, Mageeney CM.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-48634-z},
pmid = {38071193}
}
@article{lin230252,
title = {Reproducible growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root exudation.},
author = {Novak V, Andeer PF, Bowen BP, Ding Y, Zhalnina K, Hofmockel KS, Tomaka C, Harwood TV, van Winden MCM, Golini AN, Kosina SM, Northen TR.},
journal = {Sci Adv},
year = {2024},
doi = {10.1126/sciadv.adg7888},
pmid = {38170767}
}
@article{lin374820,
title = {Subtractive modification of bacterial consortium using antisense peptide nucleic acids.},
author = {Hizume T, Sato Y, Iwaki H, Honda K, Okano K.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1321428},
pmid = {38260881}
}
@article{lin374821,
title = {Characterizing Biogenic MnOx Produced by Pseudomonas putida MnB1 and Its Catalytic Activity towards Water Oxidation.},
author = {Morales E, Shaner SE, Stone KL.},
journal = {Life (Basel)},
year = {2024},
doi = {10.3390/life14020171},
pmid = {38398680}
}
@article{lin230233,
title = {The Roles of Plant-Growth-Promoting Rhizobacteria (PGPR)-Based Biostimulants for Agricultural Production Systems.},
author = {Sun W, Shahrajabian MH, Soleymani A.},
journal = {Plants (Basel)},
year = {2024},
doi = {10.3390/plants13050613},
pmid = {38475460}
}
@article{lin230214,
title = {Enhanced chaotrope tolerance and (S)-2-hydroxypropiophenone production by recombinant Pseudomonas putida engineered with Pprl from Deinococcus radiodurans.},
author = {Kordesedehi R, Shahpiri A, Asadollahi MA, Biria D, Nikel PI.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.14448},
pmid = {38498302}
}
@article{lin374826,
title = {Resistance on the rise: Assessment of antibiotic-resistant indicator organisms in Shem Creek, Charleston, South Carolina.},
author = {Emery B, Fullerton H, Bossak B.},
journal = {Dialogues Health},
year = {2022},
doi = {10.1016/j.dialog.2022.100063},
pmid = {38515911}
}
@article{lin374828,
title = {The Indiscriminate Chemical Makeup of Secondary Metabolites Derived from Endophytes Harvested from Aloe barbadensis Miller in South Africa's Limpopo Region.},
author = {Nchabeleng MM, Fonkui TY, Ezekiel G.},
journal = {Molecules},
year = {2024},
doi = {10.3390/molecules29061297},
pmid = {38542933}
}
@article{lin230249,
title = {Biocatalytic Hydrogen-Borrowing Cascade in Organic Synthesis.},
author = {Liu ZX, Gao YD, Yang LC.},
journal = {JACS Au},
year = {2024},
doi = {10.1021/jacsau.4c00026},
pmid = {38559715}
}
@article{lin374819,
title = {Precise microbiome engineering using natural and synthetic bacteriophages targeting an artificial bacterial consortium.},
author = {Tanaka T, Sugiyama R, Sato Y, Kawaguchi M, Honda K, Iwaki H, Okano K.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1403903},
pmid = {38756723}
}
@article{lin230223,
title = {First Report of Curtobacterium flaccumfaciens in Bulgaria.},
author = {Kizheva Y, Pandova M, Dimitrova M, Gladicheva Y, Garkova M, Pirnareva D, Donchev D, Moncheva P, Hristova P.},
journal = {Pathogens},
year = {2024},
doi = {10.3390/pathogens13060483},
pmid = {38921781}
}
@article{lin374813,
title = {Pseudomonas fortuita sp. nov., isolated from the endosphere of a wild yam.},
author = {Carlier A, Beaumel M, Moreau S, Acar T, Sana TG, Cnockaert M, Vandamme P.},
journal = {Int J Syst Evol Microbiol},
year = {2024},
doi = {10.1099/ijsem.0.006395},
pmid = {38940814}
}
@article{lin230400,
title = {Metabolic bottlenecks of Pseudomonas taiwanensis VLB120 during growth on d-xylose via the Weimberg pathway.},
author = {Nerke P, Korb J, Haala F, Hubmann G, Lutz S.},
journal = {Metab Eng Commun},
year = {2024},
doi = {10.1016/j.mec.2024.e00241},
pmid = {39021639}
}
@article{lin374836,
title = {Effect of mutation of phaC on carbon supply, extracellular polysaccharide production, and pathogenicity of Xanthomonas oryzae pv. oryzae.},
author = {Gao X, Tan Z, Fang Y, Xie Q, Liu W, Tao J, Miao W, Jin P.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-69621-y},
pmid = {39138326}
}
@article{lin374901,
title = {Advances in silver nanoparticles: a comprehensive review on their potential as antimicrobial agents and their mechanisms of action elucidated by proteomics.},
author = {Rodrigues AS, Batista JGS, Rodrigues MAV, Thipe VC, Minarini LAR, Lopes PS, Lugao AB.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1440065},
pmid = {39149204}
}
@article{lin230399,
title = {Systems biology of electrogenic Pseudomonas putida - multi-omics insights and metabolic engineering for enhanced 2-ketogluconate production.},
author = {Weimer A, Pause L, Ries F, Kohlstedt M, Adrian L, Kromer J, Lai B, Wittmann C.},
journal = {Microb Cell Fact},
year = {2024},
doi = {10.1186/s12934-024-02509-8},
pmid = {39261865}
}
@article{lin230237,
title = {The design and development of EcoBiomes: Multi-species synthetic microbial consortia inspired by natural desert microbiome to enhance the resilience of climate-sensitive ecosystems.},
author = {Mousa WK, Ghemrawi R, Abu-Izneid T, Al Ramadan N, Al Sheebani F.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e36548},
pmid = {39262988}
}
@article{lin374852,
title = {A tRNA modification with aminovaleramide facilitates AUA decoding in protein synthesis.},
author = {Miyauchi K, Kimura S, Akiyama N, Inoue K, Ishiguro K, Vu TS, Srisuknimit V, Koyama K, Hayashi G, Soma A, Nagao A, Shirouzu M, Okamoto A, Waldor MK, Suzuki T.},
journal = {Nat Chem Biol},
year = {2025},
doi = {10.1038/s41589-024-01726-x},
pmid = {39300229}
}
@article{lin230222,
title = {Investigating novel Streptomyces bacteriophage endolysins as potential antimicrobial agents.},
author = {Maneekul J, Chiaha A, Hughes R, Labry F, Saito J, Almendares M, Banda BN, Lopez L, McGaskey N, Miranda M, Rana J, Zadeh BR, Hughes LE.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.01170-24},
pmid = {39570052}
}
@article{lin230217,
title = {Phenotypic Plasticity During Organofluorine Degradation Revealed by Adaptive Evolution.},
author = {O'Connor MR, Thoma CJ, Dodge AG, Wackett LP.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.70066},
pmid = {39724398}
}
@article{lin230226,
title = {A biocompatible beta-cyclodextrin inclusion complex containing natural extracts: a promising antibiofilm agent.},
author = {Alabrahim OAA, Fytory M, Abou-Shanab AM, Lababidi J, Fritzsche W, El-Badri N, Azzazy HME.},
journal = {Nanoscale Adv},
year = {2025},
doi = {10.1039/d4na00916a},
pmid = {39845135}
}
@article{lin230201,
title = {Ecotoxic effect of mycogenic silver nanoparticles in water and soil environment.},
author = {Tonczyk A, Niedzialkowska K, Lisowska K.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-95485-x},
pmid = {40155646}
}
@article{lin230229,
title = {Resistance and Biodegradation of Triclosan and Propylparaben by Isolated Bacteria from Greywater.},
author = {Itzhari D, Nzeh J, Ronen Z.},
journal = {J Xenobiot},
year = {2025},
doi = {10.3390/jox15020056},
pmid = {40278161}
}
@article{lin230218,
title = {Biodegradable hydrogels and microbial consortia as a treatment for soil dysbiosis.},
author = {Davis RA, Mafune KK, Winkler MKH.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1565940},
pmid = {40376461}
}
@article{lin374889,
title = {Synergistic enhancement of heavy metal tolerance and reduction by indigenous bacterial consortia of Pseudomonas putida and Pasteurella aerogenes.},
author = {Qurbani K, Wsw H, Khdhr R, Hussein S, Ibrahim B, Mahmood A, Hama L, Ibrahim F, Amiri O.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-99238-8},
pmid = {40634562}
}
@article{lin230213,
title = {Matrix-independent screening of defluorination in vitro and in vivo.},
author = {Simon AT, Dodge AG, Bondy J, O'Connor MR, Aksan A, Wackett LP.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.01798-25},
pmid = {40823825}
}
@article{lin230224,
title = {Effect of plant growth-promoting bacteria (PGPB) on the antioxidant and antibacterial activities in Chilean 'sapito' common beans.},
author = {Flores-Castanon N, Meza C, Valenzuela F, Ormeno C, Tapia J, Carrasco B, Banerjee A.},
journal = {BMC Plant Biol},
year = {2025},
doi = {10.1186/s12870-025-07151-z},
pmid = {40836220}
}
@article{lin230216,
title = {Novel 3D-Printed Replica Plate Device Ensures High-Throughput Antibacterial Screening of Halophilic Bacteria.},
author = {Berberov K, Atanasova N, Krumov N, Yakimova B, Lazarkevich I, Engibarov S, Damyanova T, Boyadzhieva I, Kabaivanova L.},
journal = {Mar Drugs},
year = {2025},
doi = {10.3390/md23080295},
pmid = {40863612}
}
@article{lin374814,
title = {Predicting rhizosphere-competence-related catabolic gene clusters in plant-associated bacteria with rhizoSMASH.},
author = {Li Y, Sun M, Raaijmakers JM, Mommer L, Zhang F, Song C, Medema MH.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-63526-8},
pmid = {40998779}
}
@article{lin230231,
title = {Carbon Dots as Multifunctional Nanomaterials: A Review on Antimicrobial Activities and Fluorescence-Based Microbial Detection.},
author = {Romulo A, Suryoprabowo S, Setiarto RHB, Guo Y.},
journal = {Molecules},
year = {2025},
doi = {10.3390/molecules30193969},
pmid = {41097389}
}
@article{lin374812,
title = {Preparation of postbioYDFF-3 loaded absorbent pad and its application in fresh-keeping of refrigeration grass carp slices.},
author = {Qiao E, Zhang Z, Zhao J, Zang J, Wu J, Peng C, Lv L, Li Z.},
journal = {Food Chem X},
year = {2025},
doi = {10.1016/j.fochx.2025.103079},
pmid = {41103390}
}