Strain identifier
BacDive ID: 166073
Type strain: 
Species: Pseudomonas putida
Strain history: T. Kudo CE2010.
NCBI tax ID(s): 1295131 (strain), 303 (species)
General
@ref: 67770
BacDive-ID: 166073
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Pseudomonas putida JCM 9802 is a mesophilic, Gram-negative bacterium that was isolated from Activated sludge,by enrichment with biphenyl as the sole source of carbon and energy.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 303 | species |
| 1295131 | strain |
strain history
- @ref: 67770
- history: T. Kudo CE2010.
doi: 10.13145/bacdive166073.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas putida
- full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus putidus 20215 Arthrobacter siderocapsulatus
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas putida
full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 99.99 | |
| 69480 | 97.898 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.976 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Activated sludge,by enrichment with biphenyl as the sole source of carbon and energy
- geographic location: Kanagawa
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Pseudomonas putida DNA for 16S rRNA, partial sequence
- accession: D87102
- length: 889
- database: ena
- NCBI tax ID: 303
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas putida JCM 9802 | GCA_001312145 | contig | ncbi | 1295131 |
| 66792 | Pseudomonas putida JCM 9802 | 1295131.3 | wgs | patric | 1295131 |
| 66792 | Pseudomonas putida JCM 9802 | 2728369711 | draft | img | 1295131 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 91.317 | no |
| gram-positive | no | 98.213 | no |
| anaerobic | no | 98.134 | no |
| aerobic | yes | 94.803 | no |
| halophile | no | 80.162 | no |
| spore-forming | no | 95.936 | no |
| thermophile | no | 99.899 | yes |
| glucose-util | yes | 92.484 | no |
| flagellated | yes | 78.294 | no |
| glucose-ferment | no | 89.976 | no |
External links
@ref: 67770
culture collection no.: JCM 9802
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |