Staphylococcus aureus CCUG 54581 is an aerobe, mesophilic prokaryote of the family Staphylococcaceae.
aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Staphylococcaceae |
| Genus Staphylococcus |
| Species Staphylococcus aureus |
| Full scientific name Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 60249 | positive | growth | 37 | mesophilic |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68375 | 22599 ChEBI | arabinose | - | fermentation | from API ID32STA |
| 68375 | 29016 ChEBI | arginine | + | hydrolysis | from API ID32STA |
| 68375 | 17057 ChEBI | cellobiose | - | fermentation | from API ID32STA |
| 68375 | 15824 ChEBI | D-fructose | + | fermentation | from API ID32STA |
| 68375 | 17634 ChEBI | D-glucose | + | fermentation | from API ID32STA |
| 68375 | 16899 ChEBI | D-mannitol | + | fermentation | from API ID32STA |
| 68375 | 16024 ChEBI | D-mannose | + | fermentation | from API ID32STA |
| 68375 | 16988 ChEBI | D-ribose | - | fermentation | from API ID32STA |
| 68375 | 4853 ChEBI | esculin | - | hydrolysis | from API ID32STA |
| 68375 | 17716 ChEBI | lactose | + | fermentation | from API ID32STA |
| 68375 | 17306 ChEBI | maltose | + | fermentation | from API ID32STA |
| 68375 | 59640 ChEBI | N-acetylglucosamine | + | fermentation | from API ID32STA |
| 68375 | 17632 ChEBI | nitrate | + | reduction | from API ID32STA |
| 68375 | 18257 ChEBI | ornithine | - | degradation | from API ID32STA |
| 68375 | 16634 ChEBI | raffinose | - | fermentation | from API ID32STA |
| 68375 | 17992 ChEBI | sucrose | + | fermentation | from API ID32STA |
| 68375 | 27082 ChEBI | trehalose | + | fermentation | from API ID32STA |
| 68375 | 32528 ChEBI | turanose | + | fermentation | from API ID32STA |
| 68375 | 16199 ChEBI | urea | - | hydrolysis | from API ID32STA |
| @ref | ChEBI | Metabolite | Is sensitive | Sensitivity conc. | |
|---|---|---|---|---|---|
| 68375 | 28368 | novobiocin | 1.8 µg | from API ID32STA |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68375 | 15688 ChEBI | acetoin | from API ID32STA |
| @ref | Chebi-ID | Metabolite | Voges-proskauer-test | |
|---|---|---|---|---|
| 68375 | 15688 ChEBI | acetoin | + | from API ID32STA |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68375 | alkaline phosphatase | + | 3.1.3.1 | from API ID32STA |
| 68375 | arginine dihydrolase | + | 3.5.3.6 | from API ID32STA |
| 68375 | beta-galactosidase | - | 3.2.1.23 | from API ID32STA |
| 68375 | beta-glucosidase | - | 3.2.1.21 | from API ID32STA |
| 68375 | beta-glucuronidase | - | 3.2.1.31 | from API ID32STA |
| 68375 | L-arginine arylamidase | - | from API ID32STA | |
| 68375 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32STA |
| 68375 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API ID32STA |
| 68375 | urease | - | 3.5.1.5 | from API ID32STA |
| 60249 | Sampling date1976 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 35891_F01 assembly for Staphylococcus aureus NCTC10833 | contig | 1280 | 78.51 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Staphylococcus aureus subsp. aureus strain ATCC 25904 16S ribosomal RNA gene, partial sequence. | AY688032 | 464 | 1280 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 89.80 | no |
| 125439 | motility | BacteriaNetⓘ | no | 56.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 75.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 93.20 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 85.71 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 99.44 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 70.42 | no |
| 125438 | aerobic | aerobicⓘ | yes | 56.03 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 93.74 | no |
| 125438 | flagellated | motile2+ⓘ | no | 79.89 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Mass Spectrometry-Based Analysis of Surface Proteins in Staphylococcus aureus Clinical Strains: Identification of Promising k-mer Targets for Diagnostics. | Svetlicic E, Alarcon LA, Karlsson R, Jers C, Mijakovic I. | J Proteome Res | 10.1021/acs.jproteome.5c00321 | 2025 | ||
| In Vitro Growth-Inhibitory Synergistic Effect of Zinc Pyrithione in Combination with Gentamicin against Bacterial Skin Pathogens of Livestock. | Mala L, Lalouckova K, Skrivanova E, Houdkova M, Strakova M, Kokoska L. | Antibiotics (Basel) | 10.3390/antibiotics11070960 | 2022 | ||
| Oxacillin (Methicillin) Resistant Staphylococci in Domestic Animals in the Czech Republic. | Bzdil J, Zouharova M, Nedbalcova K, Sladecek V, Senk D, Holy O. | Pathogens | 10.3390/pathogens10121585 | 2021 | ||
| Antimicrobial Activity of Actinomycetes Isolated From Hot Springs in Western Uganda. | Bazira J, Naume Joyce K, Pauline Petra N, Mwesigye J, Kassaza K, Simon K. | Cureus | 10.7759/cureus.92917 | 2025 | ||
| The Fe-Cyclam-Derived Compound [Fe(cyclam)sal]PF6 Restrains Drug-Resistant Staphylococcus aureus Proliferation and Biofilm Formation. | Branca MT, Silva TP, Lemos ASO, Campos LM, Souza TF, Palazzi C, Oliveira VS, Coimbra ES, Silva FON, F B Pontes AC, M Apolonio AC, Melo RCN, de L Pontes D, Fabri RL. | ACS Omega | 10.1021/acsomega.4c11347 | 2025 | ||
| Pulsatilla chinensis extract alleviate Staphylococcus aureus induced mastitis in mice by regulating the inflammatory response and gut microbiota. | Xiang Y, Li Z, Liu C, Wei Z, Mo X, Zhong Y, He R, Liang Z, He Y, He J. | Front Vet Sci | 10.3389/fvets.2025.1603107 | 2025 | ||
| Biogenic silver nanoparticles: in vitro activity against Staphylococcus aureus methicillin-resistant (MRSA) and multidrug-resistant coagulase-negative Staphylococcus (CoNS). | da Cunha KF, Oliveira Garcia M, Allend SO, de Albernaz DFT, Panagio LA, Neto ACPS, Larre Oliveira T, Hartwig DD. | Braz J Microbiol | 10.1007/s42770-023-01102-2 | 2023 | ||
| Enzymology | Assessment of the biofilm formation capacities of Staphylococcus aureus strains Newman and Newman D2C in vitro and in vivo. | Wieland B, Gunaratnam G, Patzold L, Wadood NA, Schmartz GP, Kundu S, Kirilov NK, Kruger I, Elhawy MI, Rehner J, Heintz H, Schmitz F, Yildiz D, Krasteva-Christ G, Becker SL, Jacobs K, Bischoff M. | Sci Rep | 10.1038/s41598-025-00521-5 | 2025 | |
| D-alanine synthesis and exogenous alanine affect the antimicrobial susceptibility of Staphylococcus aureus. | Suzuki Y, Kawada-Matsuo M, Thuan VTT, Le MN-T, Sakaguchi T, Komatsuzawa H. | Antimicrob Agents Chemother | 10.1128/aac.01936-24 | 2025 | ||
| Anionic Boron-Cluster BODIPY Conjugates As Promising Photosensitizers for Targeted Antimicrobial Photodynamic Therapy. | Ordonez-Hernandez J, Gomez AC, Hernando J, Quevedo M, Ortiz JC, Yero D, Gibert I, Nunez R. | ACS Omega | 10.1021/acsomega.5c07634 | 2025 | ||
| Chemotypic and Seasonal Variations in Essential Oils from Mespilodaphne cymbarum (Kunth) Trofimov and Their Antibacterial and Antibiofilm Activities. | Boaretto AG, Gris D, Scherer J, Farias KS, Quadros JC, Macedo AJ, Carollo CA, Silva DB. | Plants (Basel) | 10.3390/plants14131939 | 2025 | ||
| Resistance profile and biofilm production of Enterococcus spp., Staphylococcus sp., and Streptococcus spp. from dairy farms in southern Brazil. | Santos PR, Kraus RB, Ladeira SL, Pereira GM, Cunha KF, Palhares KE, Silva ACA, Dors GC, Lima HG, Cereser ND, Nascente PS. | Braz J Microbiol | 10.1007/s42770-023-00929-z | 2023 | ||
| Enhancement of neutrophil chemotaxis by trans-anethole-treated Staphylococcus aureus strains. | Kwiatkowski P, Tabis A, Sobolewski P, Plazinski W, Pruss A, Sienkiewicz M, Dolegowska B, Wojciechowska-Koszko I. | PLoS One | 10.1371/journal.pone.0284042 | 2023 | ||
| Combined potential of copaifera officinalis oleoresin and chitosan against oral pathogens. | Gomes TV, de Oliveira MS, Polo AB, Tome BV, Cardoso MM, Tavares GD, Apolonio ACM. | Braz J Microbiol | 10.1007/s42770-024-01523-7 | 2024 | ||
| A Synthetic Phage-Peptide Conjugate as a Potent Antibacterial Agent for Pseudomonas aeruginosa Infections. | Yang Y, Vexler S, Jordan MC, Abbondante S, Kang D, Peng H, Marshall M, Naini BV, Jain S, Lai YC, Annabi N, Roos KP, Pearlman E, Chen IA. | ACS Cent Sci | 10.1021/acscentsci.5c00562 | 2025 | ||
| Prevalence of Selected Immune Evasion Genes and Clonal Diversity in Methicillin-Susceptible Staphylococcus aureus Isolated from Nasal Carriers and Outpatients with Cut Wound Infections. | Jura G, Masiuk H, Pruss A, Kurzawski M, Sienkiewicz M, Wojciechowska-Koszko I, Kwiatkowski P. | Antibiotics (Basel) | 10.3390/antibiotics13080730 | 2024 | ||
| Bioactive Compounds from Dodonaea viscosa Flowers: Potent Antibacterial and Antiproliferative Effects in Breast Cancer Cells. | Raksat A, Yee D, Gi YJ, Wongwiwatthananukit S, Chang LK, Kaawaloa KP, Wall MM, Lee J, Chang LC. | Molecules | 10.3390/molecules30112274 | 2025 | ||
| Medicinal plant Miconia albicans synergizes with ampicillin and ciprofloxacin against multi-drug resistant Acinetobacter baumannii and Staphylococcus aureus. | de Jesus GS, Silva Trentin D, Barros TF, Ferreira AMT, de Barros BC, de Oliveira Figueiredo P, Garcez FR, Dos Santos EL, Micheletti AC, Yoshida NC. | BMC Complement Med Ther | 10.1186/s12906-023-04147-w | 2023 | ||
| Metabolism | Systematic over-expression of secondary metabolism transcription factors to reveal the pharmaceutical potential of Aspergillus nidulans. | Guo S, Pardeshi L, Qin L, Cheung CY, Liu X, Fan L, Mok CC, Parsania C, Dong Z, Ko BCB, Tan K, Wong KH. | Commun Biol | 10.1038/s42003-025-08840-z | 2025 | |
| Antimicrobial resistance in Escherichia coli and Staphylococcus aureus at human-animal interfaces on Chongming Island, Shanghai: A One Health perspective. | Lv C, Leng J, Qian M, Sun B, Ye H, Li M, Zhou N, Cheng Z, Chen Y, Guo X, Shang J, Zhang L, Zhu Y. | One Health | 10.1016/j.onehlt.2024.100910 | 2024 | ||
| Carbopol 940-based hydrogels loading synergistic combination of quercetin and luteolin from the herb Euphorbia humifusa to promote Staphylococcus aureus infected wound healing. | Wu X, Chen HW, Zhao ZY, Li L, Song C, Xiong J, Yang GX, Zhu Q, Hu JF. | RSC Med Chem | 10.1039/d3md00611e | 2024 | ||
| Characteristics of Metallic Nanoparticles (Especially Silver Nanoparticles) as Anti-Biofilm Agents. | Li H, Yang Z, Khan SA, Walsh LJ, Seneviratne CJ, Ziora ZM. | Antibiotics (Basel) | 10.3390/antibiotics13090819 | 2024 | ||
| Multimodal nanoimmunotherapy engages neutrophils to eliminate Staphylococcus aureus infections. | Zhu J, Xie R, Gao R, Zhao Y, Yodsanit N, Zhu M, Burger JC, Ye M, Tong Y, Gong S. | Nat Nanotechnol | 10.1038/s41565-024-01648-8 | 2024 | ||
| ERA-CRISPR/Cas12a-based, fast and specific diagnostic detection for Chlamydia pneumoniae. | Zhou Y, Yan Z, Zhou S, Li W, Yang H, Chen H, Deng Z, Zeng Q, Sun P, Wu Y. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1477422 | 2024 | ||
| A Novel 3D Printed Model of Infected Human Hair Follicles to Demonstrate Targeted Delivery of Nanoantibiotics. | Aliyazdi S, Frisch S, Neu T, Veldung B, Karande P, Schaefer UF, Loretz B, Vogt T, Lehr CM. | ACS Biomater Sci Eng | 10.1021/acsbiomaterials.4c00570 | 2024 | ||
| Immunomodulatory effects of trans-anethole-treated Staphylococcus aureus Newman strain. | Kwiatkowski P, Rogulska K, Pruss A, Sienkiewicz M, Dolegowska B, Wojciechowska-Koszko I. | Sci Rep | 10.1038/s41598-023-34138-3 | 2023 | ||
| The effects of submicron-textured surface topography on antibiotic efficacy against biofilms. | Khursheed A, Xu LC, Siedlecki CA. | J Biomed Mater Res B Appl Biomater | 10.1002/jbm.b.35436 | 2024 | ||
| Staphylococcus aureus induced trained immunity in macrophages confers heterologous protection against gram-negative bacterial infection. | Carlile SR, Cahill SC, O'Brien EC, Neto NGB, Monaghan MG, McLoughlin RM. | iScience | 10.1016/j.isci.2024.111284 | 2024 | ||
| Staphylococcus aureus strains exhibit heterogenous tolerance to direct cold atmospheric plasma therapy. | Baz A, Bakri A, Butcher M, Short B, Ghimire B, Gaur N, Jenkins T, Short RD, Riggio M, Williams C, Ramage G, Brown JL. | Biofilm | 10.1016/j.bioflm.2023.100123 | 2023 | ||
| A Foundation Model Identifies Broad-Spectrum Antimicrobial Peptides against Drug-Resistant Bacterial Infection. | Li T, Ren X, Luo X, Wang Z, Li Z, Luo X, Shen J, Li Y, Yuan D, Nussinov R, Zeng X, Shi J, Cheng F. | Nat Commun | 10.1038/s41467-024-51933-2 | 2024 | ||
| Small-molecule compound SYG-180-2-2 attenuates Staphylococcus aureus virulence by inhibiting hemolysin and staphyloxanthin production. | Rao L, Xu Y, Shen L, Wang X, Zhao H, Wang B, Zhang J, Xiao Y, Guo Y, Sheng Y, Cheng L, Song Z, Yu F. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.1008289 | 2022 | ||
| Targeting Intracellular Bacteria with Dual Drug-loaded Lactoferrin Nanoparticles. | Andima M, Boese A, Paul P, Koch M, Loretz B, Lehr CM. | ACS Infect Dis | 10.1021/acsinfecdis.4c00045 | 2024 | ||
| Metabolism | PurN Is Involved in Antibiotic Tolerance and Virulence in Staphylococcus aureus. | Peng Q, Guo L, Dong Y, Bao T, Wang H, Xu T, Zhang Y, Han J. | Antibiotics (Basel) | 10.3390/antibiotics11121702 | 2022 | |
| Pyrgos[n]cages: Redefining antibacterial strategy against drug resistance. | Zhang Y, Luo M, Shi X, Li A, Zhou W, Yin Y, Wang H, Wong WL, Feng X, He Q. | Sci Adv | 10.1126/sciadv.adp4872 | 2024 | ||
| Galangin as a direct inhibitor of vWbp protects mice from Staphylococcus aureus-induced pneumonia. | Jin Y, Yang P, Wang L, Gao Z, Lv J, Cui Z, Wang T, Wang D, Wang L. | J Cell Mol Med | 10.1111/jcmm.17129 | 2022 | ||
| Pathogenicity | Antibacterial Activity of Ticagrelor in Conventional Antiplatelet Dosages Against Antibiotic-Resistant Gram-Positive Bacteria. | Lancellotti P, Musumeci L, Jacques N, Servais L, Goffin E, Pirotte B, Oury C. | JAMA Cardiol | 10.1001/jamacardio.2019.1189 | 2019 | |
| Crosslinkable fluorophenoxy-substituted poly[bis(octafluoropentoxy) phosphazene] biomaterials with improved antimicrobial effect and hemocompatibility. | Alwine S, Chen C, Shen L, Allcock HR, Siedlecki CA, Xu LC. | J Biomed Mater Res B Appl Biomater | 10.1002/jbm.b.35252 | 2023 | ||
| Combination of lidocaine gel and povidone-iodine to decrease acquired infections in procedures performed using topical anesthesia. | Xia J, Lyons RJ, Lin MY, Khalifa YM, LaRock CN. | J Cataract Refract Surg | 10.1097/j.jcrs.0000000000000245 | 2020 | ||
| Nucleotide Messenger Signaling of Staphylococci in Responding to Nitric Oxide - Releasing Biomaterials. | Ochetto A, Sun D, Siedlecki CA, Xu LC. | ACS Biomater Sci Eng | 10.1021/acsbiomaterials.2c01536 | 2023 | ||
| Sensitivity of Staphylococcal Biofilm to Selected Compounds of Plant Origin. | Swolana D, Kepa M, Kabala-Dzik A, Dzik R, Wojtyczka RD. | Antibiotics (Basel) | 10.3390/antibiotics10050607 | 2021 | ||
| Effect of Cobalt-Chromium-Molybdenum Implant Surface Modifications on Biofilm Development of S. aureus and S. epidermidis. | Paulitsch-Fuchs AH, Bodendorfer B, Wolrab L, Eck N, Dyer NP, Lohberger B. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.837124 | 2022 | ||
| Staphylococcus aureus Biofilms and Their Response to a Relevant in vivo Iron Source. | Dauros-Singorenko P, Wiles S, Swift S. | Front Microbiol | 10.3389/fmicb.2020.509525 | 2020 | ||
| Modulatory Contribution of Oxygenating Hydrogels and Polyhexamethylene Biguanide on the Antimicrobial Potency of Neutrophil-like Cells. | Abri S, Attia R, Pukale DD, Leipzig ND. | ACS Biomater Sci Eng | 10.1021/acsbiomaterials.2c00292 | 2022 | ||
| Metabolism | Evaluating the potential efficacy and limitations of a phage for joint antibiotic and phage therapy of Staphylococcus aureus infections. | Berryhill BA, Huseby DL, McCall IC, Hughes D, Levin BR. | Proc Natl Acad Sci U S A | 10.1073/pnas.2008007118 | 2021 | |
| Pathogenicity | ClpC affects the intracellular survival capacity of Staphylococcus aureus in non-professional phagocytic cells. | Gunaratnam G, Tuchscherr L, Elhawy MI, Bertram R, Eisenbeis J, Spengler C, Tschernig T, Loffler B, Somerville GA, Jacobs K, Herrmann M, Bischoff M. | Sci Rep | 10.1038/s41598-019-52731-3 | 2019 | |
| Metabolism | Impact of the Histidine-Containing Phosphocarrier Protein HPr on Carbon Metabolism and Virulence in Staphylococcus aureus. | Patzold L, Brausch AC, Bielefeld EL, Zimmer L, Somerville GA, Bischoff M, Gaupp R. | Microorganisms | 10.3390/microorganisms9030466 | 2021 | |
| Submicron topography design for controlling staphylococcal bacterial adhesion and biofilm formation. | Xu LC, Siedlecki CA. | J Biomed Mater Res A | 10.1002/jbm.a.37369 | 2022 | ||
| Pathogenicity | Innate Immune Response against Staphylococcus aureus Preincubated with Subinhibitory Concentration of trans-Anethole. | Kwiatkowski P, Wojciuk B, Wojciechowska-Koszko I, Lopusiewicz L, Grygorcewicz B, Pruss A, Sienkiewicz M, Fijalkowski K, Kowalczyk E, Dolegowska B. | Int J Mol Sci | 10.3390/ijms21114178 | 2020 | |
| Improved Biodistribution and Extended Serum Half-Life of a Bacteriophage Endolysin by Albumin Binding Domain Fusion. | Seijsing J, Sobieraj AM, Keller N, Shen Y, Zinkernagel AS, Loessner MJ, Schmelcher M. | Front Microbiol | 10.3389/fmicb.2018.02927 | 2018 | ||
| TiAl6V4 Alloy Surface Modifications and Their Impact on Biofilm Development of S. aureus and S. epidermidis. | Paulitsch-Fuchs AH, Wolrab L, Eck N, Dyer NP, Bodendorfer B, Lohberger B. | J Funct Biomater | 10.3390/jfb12020036 | 2021 | ||
| Metabolism | Beneficial effect of chronic Staphylococcus aureus infection in a model of multiple sclerosis is mediated through the secretion of extracellular adherence protein. | Kumar P, Kretzschmar B, Herold S, Nau R, Kreutzfeldt M, Schutze S, Bahr M, Hein K. | J Neuroinflammation | 10.1186/s12974-015-0241-8 | 2015 | |
| Metabolism | Inhibition of Host Arginase Activity Against Staphylococcal Bloodstream Infection by Different Metabolites. | Pang R, Zhou H, Huang Y, Su Y, Chen X. | Front Immunol | 10.3389/fimmu.2020.01639 | 2020 | |
| Metabolism | The Staphylococcus aureus Extracellular Adherence Protein Eap Is a DNA Binding Protein Capable of Blocking Neutrophil Extracellular Trap Formation. | Eisenbeis J, Saffarzadeh M, Peisker H, Jung P, Thewes N, Preissner KT, Herrmann M, Molle V, Geisbrecht BV, Jacobs K, Bischoff M. | Front Cell Infect Microbiol | 10.3389/fcimb.2018.00235 | 2018 | |
| Pathogenicity | Triterpene Derivatives as Relevant Scaffold for New Antibiofilm Drugs. | Silva GNSD, Primon-Barros M, Macedo AJ, Gnoatto SCB. | Biomolecules | 10.3390/biom9020058 | 2019 | |
| Antimicrobial activity of bacteriophage derived triple fusion protein against Staphylococcus aureus. | Kovalskaya NY, Herndon EE, Foster-Frey JA, Donovan DM, Hammond RW. | AIMS Microbiol | 10.3934/microbiol.2019.2.158 | 2019 | ||
| Pathogenicity | A bacteriocin-based antimicrobial formulation to effectively disrupt the cell viability of methicillin-resistant Staphylococcus aureus (MRSA) biofilms. | Kranjec C, Ovchinnikov KV, Gronseth T, Ebineshan K, Srikantam A, Diep DB. | NPJ Biofilms Microbiomes | 10.1038/s41522-020-00166-4 | 2020 | |
| Evaluation of the Antimicrobial Activity in Host-Mimicking Media and In Vivo Toxicity of Antimicrobial Polymers as Functional Mimics of AMPs. | Garcia Maset R, Hapeshi A, Hall S, Dalgliesh RM, Harrison F, Perrier S. | ACS Appl Mater Interfaces | 10.1021/acsami.2c05979 | 2022 | ||
| Pathogenicity | CcpA Affects Infectivity of Staphylococcus aureus in a Hyperglycemic Environment. | Bischoff M, Wonnenberg B, Nippe N, Nyffenegger-Jann NJ, Voss M, Beisswenger C, Sunderkotter C, Molle V, Dinh QT, Lammert F, Bals R, Herrmann M, Somerville GA, Tschernig T, Gaupp R. | Front Cell Infect Microbiol | 10.3389/fcimb.2017.00172 | 2017 | |
| Pathogenicity | PtpA, a secreted tyrosine phosphatase from Staphylococcus aureus, contributes to virulence and interacts with coronin-1A during infection. | Gannoun-Zaki L, Patzold L, Huc-Brandt S, Baronian G, Elhawy MI, Gaupp R, Martin M, Blanc-Potard AB, Letourneur F, Bischoff M, Molle V. | J Biol Chem | 10.1074/jbc.ra118.003555 | 2018 | |
| Transcriptomic Analysis of the Activity of a Novel Polymyxin against Staphylococcus aureus. | Zhao J, Cheah SE, Roberts KD, Nation RL, Thompson PE, Velkov T, Du Z, Johnson MD, Li J. | mSphere | 10.1128/msphere.00119-16 | 2016 | ||
| Transcriptome | Processing human urine and ureteral stents for 16S rRNA amplicon sequencing. | Al KF, Burton JP. | STAR Protoc | 10.1016/j.xpro.2021.100435 | 2021 | |
| Staphylococcus aureus Strain Newman Photoinactivation and Cellular Response to Sunlight Exposure. | McClary JS, Sassoubre LM, Boehm AB. | Appl Environ Microbiol | 10.1128/aem.01052-17 | 2017 | ||
| Transcriptional Response of Staphylococcus aureus to Sunlight in Oxic and Anoxic Conditions. | McClary JS, Boehm AB. | Front Microbiol | 10.3389/fmicb.2018.00249 | 2018 | ||
| Enzymology | Longitudinal study of Staphylococcus aureus colonization and infection in a cohort of swine veterinarians in the United States. | Sun J, Yang M, Sreevatsan S, Bender JB, Singer RS, Knutson TP, Marthaler DG, Davies PR. | BMC Infect Dis | 10.1186/s12879-017-2802-1 | 2017 | |
| Application of Oleanolic Acid and Its Analogues in Combating Pathogenic Bacteria In Vitro/Vivo by a Two-Pronged Strategy of beta-Lactamases and Hemolysins. | Zhou Y, Guo Y, Sun X, Ding R, Wang Y, Niu X, Wang J, Deng X. | ACS Omega | 10.1021/acsomega.0c00460 | 2020 | ||
| Phylogeny | Characterization and genomic analysis of two Staphylococcus aureus bacteriophages isolated from poultry/livestock farms. | Yoon H, Yun J, Lim JA, Roh E, Jung KS, Chang Y, Ryu S, Heu S. | J Gen Virol | 10.1099/vir.0.053991-0 | 2013 | |
| Staphylococcus aureus Survives in Cystic Fibrosis Macrophages, Forming a Reservoir for Chronic Pneumonia. | Li C, Wu Y, Riehle A, Ma J, Kamler M, Gulbins E, Grassme H. | Infect Immun | 10.1128/iai.00883-16 | 2017 | ||
| Zinc-dependent histone deacetylases drive neutrophil extracellular trap formation and potentiate local and systemic inflammation. | Poli V, Pui-Yan Ma V, Di Gioia M, Broggi A, Benamar M, Chen Q, Mazitschek R, Haggarty SJ, Chatila TA, Karp JM, Zanoni I. | iScience | 10.1016/j.isci.2021.103256 | 2021 | ||
| Metabolism | Glycerol uptake is important for L-form formation and persistence in Staphylococcus aureus. | Han J, He L, Shi W, Xu X, Wang S, Zhang S, Zhang Y. | PLoS One | 10.1371/journal.pone.0108325 | 2014 | |
| Ureteral Stent Microbiota Is Associated with Patient Comorbidities but Not Antibiotic Exposure. | Al KF, Denstedt JD, Daisley BA, Bjazevic J, Welk BK, Pautler SE, Gloor GB, Reid G, Razvi H, Burton JP. | Cell Rep Med | 10.1016/j.xcrm.2020.100094 | 2020 | ||
| Metabolism | The biochemical origins of the surface-enhanced Raman spectra of bacteria: a metabolomics profiling by SERS. | Premasiri WR, Lee JC, Sauer-Budge A, Theberge R, Costello CE, Ziegler LD. | Anal Bioanal Chem | 10.1007/s00216-016-9540-x | 2016 | |
| Enzymology | Clinically relevant model of pneumococcal pneumonia, ARDS, and nonpulmonary organ dysfunction in mice. | Gotts JE, Bernard O, Chun L, Croze RH, Ross JT, Nesseler N, Wu X, Abbott J, Fang X, Calfee CS, Matthay MA. | Am J Physiol Lung Cell Mol Physiol | 10.1152/ajplung.00132.2019 | 2019 | |
| Enzymology | Rapid Detection of Bacteria from Blood with Surface-Enhanced Raman Spectroscopy. | Boardman AK, Wong WS, Premasiri WR, Ziegler LD, Lee JC, Miljkovic M, Klapperich CM, Sharon A, Sauer-Budge AF. | Anal Chem | 10.1021/acs.analchem.6b01273 | 2016 | |
| Genotypic characteristics of Staphylococcus aureus isolates from a multinational trial of complicated skin and skin structure infections. | Campbell SJ, Deshmukh HS, Nelson CL, Bae IG, Stryjewski ME, Federspiel JJ, Tonthat GT, Rude TH, Barriere SL, Corey R, Fowler VG. | J Clin Microbiol | 10.1128/jcm.01822-07 | 2008 | ||
| Pathogenicity | Myricetin protects Galleria mellonella against Staphylococcus aureus infection and inhibits multiple virulence factors. | Silva LN, Da Hora GCA, Soares TA, Bojer MS, Ingmer H, Macedo AJ, Trentin DS. | Sci Rep | 10.1038/s41598-017-02712-1 | 2017 | |
| Pathogenicity | New cross-linkable poly[bis(octafluoropentoxy) phosphazene] biomaterials: Synthesis, surface characterization, bacterial adhesion, and plasma coagulation responses. | Xu LC, Chen C, Zhu J, Tang M, Chen A, Allcock HR, Siedlecki CA. | J Biomed Mater Res B Appl Biomater | 10.1002/jbm.b.34662 | 2020 | |
| Protoblock - A biological standard for formalin fixed samples. | Flores Bueso Y, Walker SP, Hogan G, Claesson MJ, Tangney M. | Microbiome | 10.1186/s40168-020-00901-1 | 2020 | ||
| Enzymology | Coupling of denaturing high-performance liquid chromatography and terminal restriction fragment length polymorphism with precise fragment sizing for microbial community profiling and characterization. | Penny C, Nadalig T, Alioua M, Gruffaz C, Vuilleumier S, Bringel F. | Appl Environ Microbiol | 10.1128/aem.01556-09 | 2010 | |
| Metabolism | The catabolite control protein E (CcpE) affects virulence determinant production and pathogenesis of Staphylococcus aureus. | Hartmann T, Baronian G, Nippe N, Voss M, Schulthess B, Wolz C, Eisenbeis J, Schmidt-Hohagen K, Gaupp R, Sunderkotter C, Beisswenger C, Bals R, Somerville GA, Herrmann M, Molle V, Bischoff M. | J Biol Chem | 10.1074/jbc.m114.584979 | 2014 | |
| Inhibition of bacterial adhesion and biofilm formation by a textured fluorinated alkoxyphosphazene surface. | Tang M, Chen C, Zhu J, Allcock HR, Siedlecki CA, Xu LC. | Bioact Mater | 10.1016/j.bioactmat.2020.08.027 | 2021 | ||
| Anti-Planktonic and Anti-Biofilm Properties of Pentacyclic Triterpenes-Asiatic Acid and Ursolic Acid as Promising Antibacterial Future Pharmaceuticals. | Sycz Z, Tichaczek-Goska D, Wojnicz D. | Biomolecules | 10.3390/biom12010098 | 2022 | ||
| Transcriptome | Secretome analysis defines the major role of SecDF in Staphylococcus aureus virulence. | Quiblier C, Seidl K, Roschitzki B, Zinkernagel AS, Berger-Bachi B, Senn MM. | PLoS One | 10.1371/journal.pone.0063513 | 2013 | |
| Genetics | Characterization of FFPE-induced bacterial DNA damage and development of a repair method. | Flores Bueso Y, Walker SP, Tangney M. | Biol Methods Protoc | 10.1093/biomethods/bpaa015 | 2020 | |
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| Staphylococcus aureus Strain USA300 Perturbs Acquisition of Lysosomal Enzymes and Requires Phagosomal Acidification for Survival inside Macrophages. | Tranchemontagne ZR, Camire RB, O'Donnell VJ, Baugh J, Burkholder KM. | Infect Immun | 10.1128/iai.00704-15 | 2016 | ||
| Metabolism | Comparative Prevalence of Immune Evasion Complex Genes Associated with beta-Hemolysin Converting Bacteriophages in MRSA ST5 Isolates from Swine, Swine Facilities, Humans with Swine Contact, and Humans with No Swine Contact. | Hau SJ, Sun J, Davies PR, Frana TS, Nicholson TL. | PLoS One | 10.1371/journal.pone.0142832 | 2015 | |
| Pathogenicity | Planktonic aggregates of Staphylococcus aureus protect against common antibiotics. | Haaber J, Cohn MT, Frees D, Andersen TJ, Ingmer H. | PLoS One | 10.1371/journal.pone.0041075 | 2012 | |
| A polymeric approach toward resistance-resistant antimicrobial agent with dual-selective mechanisms of action. | Bai S, Wang J, Yang K, Zhou C, Xu Y, Song J, Gu Y, Chen Z, Wang M, Shoen C, Andrade B, Cynamon M, Zhou K, Wang H, Cai Q, Oldfield E, Zimmerman SC, Bai Y, Feng X. | Sci Adv | 10.1126/sciadv.abc9917 | 2021 | ||
| Pathogenicity | Blood coagulation response and bacterial adhesion to biomimetic polyurethane biomaterials prepared with surface texturing and nitric oxide release. | Xu LC, Meyerhoff ME, Siedlecki CA. | Acta Biomater | 10.1016/j.actbio.2018.11.035 | 2019 | |
| Metabolism | Rifampin Resistance rpoB Alleles or Multicopy Thioredoxin/Thioredoxin Reductase Suppresses the Lethality of Disruption of the Global Stress Regulator spx in Staphylococcus aureus. | Villanueva M, Jousselin A, Baek KT, Prados J, Andrey DO, Renzoni A, Ingmer H, Frees D, Kelley WL. | J Bacteriol | 10.1128/jb.00261-16 | 2016 | |
| A Comprehensive Analysis of the UVC LEDs' Applications and Decontamination Capability. | Nicolau T, Gomes Filho N, Padrao J, Zille A. | Materials (Basel) | 10.3390/ma15082854 | 2022 | ||
| Occurrence of genes of putative fibrinogen binding proteins and hemolysins, as well as of their phenotypic correlates in isolates of S. lugdunensis of different origins. | Szabados F, Nowotny Y, Marlinghaus L, Korte M, Neumann S, Kaase M, Gatermann SG. | BMC Res Notes | 10.1186/1756-0500-4-113 | 2011 | ||
| Group A Streptococcus Prevents Mast Cell Degranulation to Promote Extracellular Trap Formation. | Clark M, Kim J, Etesami N, Shimamoto J, Whalen RV, Martin G, Okumura CYM. | Front Immunol | 10.3389/fimmu.2018.00327 | 2018 | ||
| Attenuation of Staphylococcus aureus-Induced Bacteremia by Human Mini-Antibodies Targeting the Complement Inhibitory Protein Efb. | Georgoutsou-Spyridonos M, Ricklin D, Pratsinis H, Perivolioti E, Pirmettis I, Garcia BL, Geisbrecht BV, Foukas PG, Lambris JD, Mastellos DC, Sfyroera G. | J Immunol | 10.4049/jimmunol.1500966 | 2015 | ||
| Airway microbiota signals anabolic and catabolic remodeling in the transplanted lung. | Mouraux S, Bernasconi E, Pattaroni C, Koutsokera A, Aubert JD, Claustre J, Pison C, Royer PJ, Magnan A, Kessler R, Benden C, Soccal PM, Marsland BJ, Nicod LP, SysCLAD Consortium. | J Allergy Clin Immunol | 10.1016/j.jaci.2017.06.022 | 2018 | ||
| Enzymology | Staphylococcal phage 2638A endolysin is lytic for Staphylococcus aureus and harbors an inter-lytic-domain secondary translational start site. | Abaev I, Foster-Frey J, Korobova O, Shishkova N, Kiseleva N, Kopylov P, Pryamchuk S, Schmelcher M, Becker SC, Donovan DM. | Appl Microbiol Biotechnol | 10.1007/s00253-012-4252-4 | 2013 | |
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| Metabolism | Requirement of the agr locus for colony spreading of Staphylococcus aureus. | Tsompanidou E, Sibbald MJ, Chlebowicz MA, Dreisbach A, Back JW, van Dijl JM, Buist G, Denham EL. | J Bacteriol | 10.1128/jb.01276-10 | 2011 | |
| Metabolism | Thioridazine induces major changes in global gene expression and cell wall composition in methicillin-resistant Staphylococcus aureus USA300. | Thorsing M, Klitgaard JK, Atilano ML, Skov MN, Kolmos HJ, Filipe SR, Kallipolitis BH. | PLoS One | 10.1371/journal.pone.0064518 | 2013 | |
| Pathogenicity | A new pharmacological agent (AKB-4924) stabilizes hypoxia inducible factor-1 (HIF-1) and increases skin innate defenses against bacterial infection. | Okumura CY, Hollands A, Tran DN, Olson J, Dahesh S, von Kockritz-Blickwede M, Thienphrapa W, Corle C, Jeung SN, Kotsakis A, Shalwitz RA, Johnson RS, Nizet V. | J Mol Med (Berl) | 10.1007/s00109-012-0882-3 | 2012 | |
| Pathogenicity | Chelating agents exert distinct effects on biofilm formation in Staphylococcus aureus depending on strain background: role for clumping factor B. | Abraham NM, Lamlertthon S, Fowler VG, Jefferson KK. | J Med Microbiol | 10.1099/jmm.0.040758-0 | 2012 | |
| Antimicrobial nitric oxide releasing surfaces based on S-nitroso-N-acetylpenicillamine impregnated polymers combined with submicron-textured surface topography. | Wo Y, Xu LC, Li Z, Matzger AJ, Meyerhoff ME, Siedlecki CA. | Biomater Sci | 10.1039/c7bm00108h | 2017 | ||
| Metabolism | Staphylococcus aureus clumping factor B mediates biofilm formation in the absence of calcium. | Abraham NM, Jefferson KK. | Microbiology (Reading) | 10.1099/mic.0.057018-0 | 2012 | |
| Pathogenicity | High antimicrobial effectiveness with low hemolytic and cytotoxic activity for PEG/quaternary copolyoxetanes. | King A, Chakrabarty S, Zhang W, Zeng X, Ohman DE, Wood LF, Abraham S, Rao R, Wynne KJ. | Biomacromolecules | 10.1021/bm401794p | 2014 | |
| Pathogenicity | Salicylic acid diminishes Staphylococcus aureus capsular polysaccharide type 5 expression. | Alvarez LP, Barbagelata MS, Gordiola M, Cheung AL, Sordelli DO, Buzzola FR. | Infect Immun | 10.1128/iai.00245-09 | 2010 | |
| Truncation of fibronectin-binding proteins in Staphylococcus aureus strain Newman leads to deficient adherence and host cell invasion due to loss of the cell wall anchor function. | Grundmeier M, Hussain M, Becker P, Heilmann C, Peters G, Sinha B. | Infect Immun | 10.1128/iai.72.12.7155-7163.2004 | 2004 | ||
| Metabolism | Virulence of Staphylococcus aureus small colony variants in the Caenorhabditis elegans infection model. | Sifri CD, Baresch-Bernal A, Calderwood SB, von Eiff C. | Infect Immun | 10.1128/iai.74.2.1091-1096.2006 | 2006 | |
| Bacterial toxins induce sustained mRNA expression of the silencing transcription factor klf2 via inactivation of RhoA and Rhophilin 1. | Dach K, Zovko J, Hogardt M, Koch I, van Erp K, Heesemann J, Hoffmann R. | Infect Immun | 10.1128/iai.00121-09 | 2009 | ||
| Metabolism | Staphylococcus aureus virulence factors identified by using a high-throughput Caenorhabditis elegans-killing model. | Begun J, Sifri CD, Goldman S, Calderwood SB, Ausubel FM. | Infect Immun | 10.1128/iai.73.2.872-877.2005 | 2005 | |
| Metabolism | Distinct roles of phenol-soluble modulins in spreading of Staphylococcus aureus on wet surfaces. | Tsompanidou E, Denham EL, Becher D, de Jong A, Buist G, van Oosten M, Manson WL, Back JW, van Dijl JM, Dreisbach A. | Appl Environ Microbiol | 10.1128/aem.03157-12 | 2013 | |
| Pathogenicity | Functional characterization of the sigmaB-dependent yabJ-spoVG operon in Staphylococcus aureus: role in methicillin and glycopeptide resistance. | Schulthess B, Meier S, Homerova D, Goerke C, Wolz C, Kormanec J, Berger-Bachi B, Bischoff M. | Antimicrob Agents Chemother | 10.1128/aac.01255-08 | 2009 | |
| Metabolism | Multi-omics analyses of radiation survivors identify radioprotective microbes and metabolites. | Guo H, Chou WC, Lai Y, Liang K, Tam JW, Brickey WJ, Chen L, Montgomery ND, Li X, Bohannon LM, Sung AD, Chao NJ, Peled JU, Gomes ALC, van den Brink MRM, French MJ, Macintyre AN, Sempowski GD, Tan X, Sartor RB, Lu K, Ting JPY. | Science | 10.1126/science.aay9097 | 2020 | |
| Metabolism | CcpA mediates the catabolite repression of tst in Staphylococcus aureus. | Seidl K, Bischoff M, Berger-Bachi B. | Infect Immun | 10.1128/iai.00724-08 | 2008 | |
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| Pathogenicity | Identification of a novel benzimidazole that inhibits bacterial biofilm formation in a broad-spectrum manner. | Sambanthamoorthy K, Gokhale AA, Lao W, Parashar V, Neiditch MB, Semmelhack MF, Lee I, Waters CM. | Antimicrob Agents Chemother | 10.1128/aac.00583-11 | 2011 | |
| Metabolism | Transcriptional profiling of XdrA, a new regulator of spa transcription in Staphylococcus aureus. | McCallum N, Hinds J, Ender M, Berger-Bachi B, Stutzmann Meier P. | J Bacteriol | 10.1128/jb.00491-10 | 2010 | |
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| Innate immune-induced depletion of bone marrow neutrophils aggravates systemic bacterial infections. | Navarini AA, Lang KS, Verschoor A, Recher M, Zinkernagel AS, Nizet V, Odermatt B, Hengartner H, Zinkernagel RM. | Proc Natl Acad Sci U S A | 10.1073/pnas.0901162106 | 2009 | ||
| A Deep Learning Approach to Antibiotic Discovery. | Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackermann Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, Church GM, Brown ED, Jaakkola TS, Barzilay R, Collins JJ. | Cell | 10.1016/j.cell.2020.01.021 | 2020 | ||
| Metabolism | During bacteremia, Pseudomonas aeruginosa PAO1 adapts by altering the expression of numerous virulence genes including those involved in quorum sensing. | Beasley KL, Cristy SA, Elmassry MM, Dzvova N, Colmer-Hamood JA, Hamood AN. | PLoS One | 10.1371/journal.pone.0240351 | 2020 | |
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| A prevalent and culturable microbiota links ecological balance to clinical stability of the human lung after transplantation. | Das S, Bernasconi E, Koutsokera A, Wurlod DA, Tripathi V, Bonilla-Rosso G, Aubert JD, Derkenne MF, Mercier L, Pattaroni C, Rapin A, von Garnier C, Marsland BJ, Engel P, Nicod LP. | Nat Commun | 10.1038/s41467-021-22344-4 | 2021 | ||
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| Metabolism | Site-specific mutation of Staphylococcus aureus VraS reveals a crucial role for the VraR-VraS sensor in the emergence of glycopeptide resistance. | Galbusera E, Renzoni A, Andrey DO, Monod A, Barras C, Tortora P, Polissi A, Kelley WL. | Antimicrob Agents Chemother | 10.1128/aac.00720-10 | 2011 | |
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| The exceptionally broad-based potential of active and passive vaccination targeting the conserved microbial surface polysaccharide PNAG. | Skurnik D, Cywes-Bentley C, Pier GB. | Expert Rev Vaccines | 10.1586/14760584.2016.1159135 | 2016 | ||
| Staphylococcal biofilm exopolysaccharide protects against Caenorhabditis elegans immune defenses. | Begun J, Gaiani JM, Rohde H, Mack D, Calderwood SB, Ausubel FM, Sifri CD. | PLoS Pathog | 10.1371/journal.ppat.0030057 | 2007 | ||
| Pathogenicity | Application of pulse-modulated radio-frequency atmospheric pressure glow discharge for degradation of doxycycline from a flowing liquid solution. | Dzimitrowicz A, Caban M, Terefinko D, Pohl P, Jamroz P, Babinska W, Cyganowski P, Stepnowski P, Lojkowska E, Sledz W, Motyka-Pomagruk A | Sci Rep | 10.1038/s41598-022-11088-w | 2022 | |
| Pathogenicity | Remarkable capacity of brosimine b to disrupt methicillin-resistant Staphylococcus aureus (MRSA) preformed biofilms. | Reis SVD, Couto NMG, Brust FR, Trentin DS, Silva JKRD, Arruda MSP, Gnoatto SCB, Macedo AJ | Microb Pathog | 10.1016/j.micpath.2020.103967 | 2020 | |
| Biotechnology | Poly-N-acetylglucosamine production in Staphylococcus aureus is essential for virulence in murine models of systemic infection. | Kropec A, Maira-Litran T, Jefferson KK, Grout M, Cramton SE, Gotz F, Goldmann DA, Pier GB | Infect Immun | 10.1128/IAI.73.10.6868-6876.2005 | 2005 | |
| Genetics | Identification of a 5-nucleotide sequence that controls expression of the ica locus in Staphylococcus aureus and characterization of the DNA-binding properties of IcaR. | Jefferson KK, Cramton SE, Gotz F, Pier GB | Mol Microbiol | 10.1046/j.1365-2958.2003.03482.x | 2003 | |
| Phylogeny | Bioassay-Guided Isolation of New Flavonoid Glycosides from Platanus x acerifolia Leaves and Their Staphylococcus aureus Inhibitory Effects. | Wu X, Tang Y, Osman EEA, Wan J, Jiang W, Yang G, Xiong J, Zhu Q, Hu JF | Molecules | 10.3390/molecules27175357 | 2022 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #60249 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54581 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68375 | Automatically annotated from API ID32STA . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data