Name: Streptomyces sp. Root66D1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131999

Type strain:

Species: Streptomyces sp.

Strain Designation: Root66D1

Culture col. no.: DSM 102552

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root66D1 <- Y. Bai

NCBI tax ID(s): 1931 (species)

SI-ID 400666

DSM 102552

Special Collections

Other strains from Streptomyces sp.

Section

Streptomyces sp. Root66D1 is a spore-forming bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

spore-forming
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Full Scientific Name (LPSN)	Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)

	Synonym	"Microechinospora"
	Synonym	Carbonactinospora
	Synonym	Actinosporangium
	Synonym	Actinopycnidium
	Synonym	Elytrosporangium
	Synonym	Streptoverticillium
	Synonym	Chainia
	Synonym	"Indiella"
	Synonym	Actinacidiphila
	Synonym	Kitasatoa
	Synonym	Microellobosporia

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.061

[Ref.: #69480]	Motility	no Confidence in %90.1

Multimedia content

[Ref.: #23791]

Caption:

Medium 65 28°C

[Ref.: #23791]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23791]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #23791]

Culture medium growth

[Ref.: #23791]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23791]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23791]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

yes Confidence in %92.26

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23791]	Sample type/isolated from	roots of Arabidopsis thaliana ecotype Shakdara (Sha)
[Ref.: #23791]	Host species	Arabidopsis thaliana
[Ref.: #23791]	Geographic location (country and/or sea, region)	Cologne (50.958N 6.856E)
[Ref.: #23791]	Country	Germany
[Ref.: #23791]	Country ISO 3 Code	DEU
[Ref.: #23791]	Continent	Europe
[Ref.: #23791]	Geographic location	50.9580°/6.8560°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces sp. Root66D1	GCA_001427745	scaffold	GenBank ENA	1736582 tax ID	*
[Ref.: #66792]	Streptomyces sp. Root66D1	1736582.3	wgs	PATRIC	1736582 tax ID	*
[Ref.: #66792]	Streptomyces sp. Root66D1	2643221587	draft	JGI IMG/M	1736582 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces sp. Root66D1 Root66D1 NCBI: GCA_001427745.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.061	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.8	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.049	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.26	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.1	no

Availability in culture collections External links

[Ref.: #23791]

Culture collection no.

DSM 102552

[Ref.: #90385]

SI-ID 400666

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23791

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102552

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90385

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400666.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces sp. Root66D1 Root66D1

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