Name: Streptomyces sp. DSM 40140
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15636

Type strain:

Species: Streptomyces sp.

Culture col. no.: DSM 40140, ATCC 19730, ATCC 23614, CBS 469.68, IFO 12746, INA 5104, ISP 5140, JCM 4351, NBRC 12746, RIA 1011, BCRC 12095, NRRL B-3897, NRRL B-5348, VKM Ac-1908

Strain history: KCC S-0351 <-- IFO 12746 <-- SAJ <-- ISP 5140 <-- INA 5104.

NCBI tax ID(s): 1931 (species)

SI-ID 92062

ATCC 23614, ATCC 19730, IFO 12746, DSM 40140, JCM 4351, CCRC 12095, NRRL B-3897, NRRL B-5348, VKM Ac-1908, CBS 469.68, CBS 257.66, NBRC 12746, BCRC 12095

Other strains from Streptomyces sp.

Section

Streptomyces sp. DSM 40140 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Full Scientific Name (LPSN)	Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)

	Synonym	"Microechinospora"
	Synonym	Carbonactinospora
	Synonym	Actinosporangium
	Synonym	Actinopycnidium
	Synonym	Elytrosporangium
	Synonym	Streptoverticillium
	Synonym	Chainia
	Synonym	"Indiella"
	Synonym	Actinacidiphila
	Synonym	Kitasatoa
	Synonym	Microellobosporia

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9342]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9342]

Culture medium growth

[Ref.: #9342]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9342]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9342]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9342]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Name of produced compound

Pimaricin analog JBIR-13

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9342]	Sample type/isolated from	soil
[Ref.: #9342]	Country	USSR
[Ref.: #9342]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces bicolor partial 16S rRNA gene, strain ISP 5140	AJ276569	1448	ENA	66874 tax ID	*
[Ref.: #20218]	Streptomyces bicolor gene for 16S ribosomal RNA, partial sequence, strain: JCM 4351	D44069	121	ENA	66874 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces bicolor NRRL B-3897	GCA_000725465	scaffold	GenBank	66874 tax ID
[Ref.: #67770]	Streptomyces bicolor NRRL B-5348	GCA_000719285	contig	GenBank	66874 tax ID

[Ref.: #67770]

GC-content

71.1 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces bicolor NRRL B-3897 NCBI: GCA_000725465.1
[Ref.: #69480]	motile	no	94.62	no
[Ref.: #69480]	flagellated	no	98.086	no
[Ref.: #69480]	gram-positive	yes	89.168	no
[Ref.: #69480]	anaerobic	no	99.135	no
[Ref.: #69480]	aerobic	yes	92.96	no
[Ref.: #69480]	halophile	no	93.72	no
[Ref.: #69480]	spore-forming	yes	93.986	no
[Ref.: #69480]	glucose-util	yes	88.957	no
[Ref.: #69480]	thermophile	no	98.982	yes
[Ref.: #69480]	glucose-ferment	no	89.807	no

Availability in culture collections External links

[Ref.: #9342]

Culture collection no.

DSM 40140, ATCC 19730, ATCC 23614, CBS 469.68, IFO 12746, INA 5104, ISP 5140, JCM 4351, NBRC 12746, RIA 1011, BCRC 12095, NRRL B-3897, NRRL B-5348, VKM Ac-1908

[Ref.: #84722]

SI-ID 92062

References

#9342

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40140

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84722

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92062.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces bicolor NRRL B-3897

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