Name: Streptomyces sp. DSM 40078
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15633

Type strain:

Species: Streptomyces sp.

Culture col. no.: DSM 40078, ATCC 23962, CBS 945.68, IFO 12914, IMRU 3018, ISP 5078, JCM 4417, NBRC 12914, RIA 1120, CIP 105125

Strain history: CIP <- 1997, IFO <- 1969, SAJ <- OWU

NCBI tax ID(s): 82638 (species)

SI-ID 49707

CIP 105125, ATCC 23962, IFO 12914, DSM 40078, JCM 4417, VKM Ac-841, CBS 945.68, NBRC 12914, BCRC 13682, CCRC 13682

Special Collections

Other strains from Streptomyces sp.

Section

Streptomyces sp. DSM 40078 is an obligate aerobe, Gram-positive, filament-shaped bacterium of the family Streptomycetaceae.

filament-shaped
Gram-positive
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Full Scientific Name (LPSN)	Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)

	Synonym	"Microechinospora"
	Synonym	Carbonactinospora
	Synonym	Actinosporangium
	Synonym	Actinopycnidium
	Synonym	Elytrosporangium
	Synonym	Streptoverticillium
	Synonym	Chainia
	Synonym	"Indiella"
	Synonym	Actinacidiphila
	Synonym	Kitasatoa
	Synonym	Microellobosporia

Information on morphological and physiological properties Morphology

[Ref.: #122498]	Gram stain	positive

[Ref.: #122498]	Cell shape	filament-shaped

[Ref.: #122498]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9291]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9291]

Culture medium growth

[Ref.: #9291]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9291]

Culture medium composition

expand / minimize

[Ref.: #36884]

Culture medium

MEDIUM 122 - for Streptomyces

[Ref.: #36884]

Culture medium growth

[Ref.: #36884]

Culture medium composition

expand / minimize

[Ref.: #122498]

Culture medium

CIP Medium 122

[Ref.: #122498]

Culture medium growth

[Ref.: #122498]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122498]

Culture medium

CIP Medium 127

[Ref.: #122498]

Culture medium growth

[Ref.: #122498]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #9291]		growth	28 °C
[Ref.: #36884]		growth	30 °C
[Ref.: #122498]		growth	25-30 °C
[Ref.: #122498]	no	growth	10 °C
[Ref.: #122498]	no	growth	37 °C
[Ref.: #122498]	no	growth	41 °C
[Ref.: #122498]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122498]

Oxygen tolerance

obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #122498]	NaCl		growth	0-4	%
[Ref.: #122498]	NaCl	no	growth	6	%
[Ref.: #122498]	NaCl	no	growth	8	%
[Ref.: #122498]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122498]	citrate ChEBI	-	carbon source
[Ref.: #122498]	esculin ChEBI	+	hydrolysis
[Ref.: #122498]	hippurate ChEBI	+	hydrolysis
[Ref.: #122498]	nitrate ChEBI	-	reduction
[Ref.: #122498]	nitrate ChEBI	-	respiration
[Ref.: #122498]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122498]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122498]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122498]		acetoin ChEBI	-
[Ref.: #122498]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #122498]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122498]	amylase	+
[Ref.: #122498]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122498]	caseinase	+	3.4.21.50
[Ref.: #122498]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122498]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122498]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122498]	gelatinase	+
[Ref.: #122498]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122498]	lipase	-
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #122498]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122498]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122498]	oxidase	-
[Ref.: #122498]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #122498]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122498]	tryptophan deaminase	-
[Ref.: #122498]	tween esterase	-
[Ref.: #122498]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122498]	1013	not determinedn.d.	+	+	+	-	+	-	-	-	-	+	+	+	-	-	-	+	+	-	+	+	+	+	-	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	+	+	+	+	-	+	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122498]	8469	-	+	+	+	+	+	-	-	-	-	-	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB301482 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #122498]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces scabiei gene for 16S ribosomal RNA, partial sequence	AB301482	1483	GenBank ENA	1930 tax ID	*
[Ref.: #20218]	Streptomyces sp. ATCC 23962 16S ribosomal RNA gene, partial sequence	AF091229	335	GenBank ENA	82638 tax ID	*
[Ref.: #20218]	Streptomyces sp. ISP5078 16S ribosomal RNA gene, partial sequence	AF038636	383	GenBank ENA	74597 tax ID	*

Availability in culture collections External links

[Ref.: #9291]

Culture collection no.

DSM 40078, ATCC 23962, CBS 945.68, IFO 12914, IMRU 3018, ISP 5078, JCM 4417, NBRC 12914, RIA 1120, CIP 105125

[Ref.: #84719]

SI-ID 49707

References

#9291

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40078

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36884 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#84719

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49707.1 )

#122498 Collection of Institut Pasteur ; Curators of the CIP; CIP 105125
* These data were automatically processed and therefore are not curated

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