Name: Streptomyces sp. DSM 40024
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15624

Type strain:

Species: Streptomyces sp.

Culture col. no.: DSM 40024, ATCC 23953, CBS 351.68, CBS 936.68, ETH 24347, IFO 13203, ISP 5024, JCM 4214, JCM 4666, KCC S-0214, KCC S-0666, NBRC 13203, NIHJ 284, NRRL B-2517, RIA 1105, BCRC 13658, NRRL ISP-5024, VKM Ac-1004

Strain history: KCC S-0666 <-- IFO 13203 <-- SAJ <-- ISP 5024 <-- Y. Okami 451-A8 (NIHJ 284).

NCBI tax ID(s): 1931 (species)

SI-ID 276648

ATCC 23953, IFO 13203, DSM 40024, JCM 4214, JCM 4666, NRRL B-2517, CCRC 13658, VKM Ac-1004, CBS 936.68, CBS 351.68, NBRC 13203, BCRC 13658

Other strains from Streptomyces sp.

Section

Streptomyces sp. DSM 40024 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil under orchid grass.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Full Scientific Name (LPSN)	Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)

	Synonym	"Microechinospora"
	Synonym	Carbonactinospora
	Synonym	Actinosporangium
	Synonym	Actinopycnidium
	Synonym	Elytrosporangium
	Synonym	Streptoverticillium
	Synonym	Chainia
	Synonym	"Indiella"
	Synonym	Actinacidiphila
	Synonym	Kitasatoa
	Synonym	Microellobosporia

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #9224]

Caption:

Medium 65 28°C

[Ref.: #9224]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9224]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9224]

Culture medium growth

[Ref.: #9224]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9224]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9224]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9224]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9224]

Name of produced compound

pyridomycine

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		pyridomycin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9224]	Sample type/isolated from	soil under orchid grass
[Ref.: #9224]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #9224]	Country	Japan
[Ref.: #9224]	Country ISO 3 Code	JPN
[Ref.: #9224]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil under orchid grass
[Ref.: #67770]	Geographic location (country and/or sea, region)	Minato-ku, Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces pyridomyceticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4214	D44030	120	ENA	68260 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces pyridomyceticus NRRL B-2517	GCA_000716015	scaffold	GenBank	68260 tax ID
[Ref.: #67770]	Streptomyces pyridomyceticus NRRL ISP-5024	GCA_000717725	contig	GenBank	68260 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces pyridomyceticus NRRL B-2517 NCBI: GCA_000716015.1
[Ref.: #69480]	motile	no	94.305	no
[Ref.: #69480]	flagellated	no	98.115	no
[Ref.: #69480]	gram-positive	yes	91.222	no
[Ref.: #69480]	anaerobic	no	99.063	no
[Ref.: #69480]	halophile	no	94.489	no
[Ref.: #69480]	spore-forming	yes	92.183	no
[Ref.: #69480]	thermophile	no	98.443	no
[Ref.: #69480]	glucose-util	yes	90.645	no
[Ref.: #69480]	aerobic	yes	93.22	no
[Ref.: #69480]	glucose-ferment	no	92.606	no

Availability in culture collections External links

[Ref.: #9224]

Culture collection no.

DSM 40024, ATCC 23953, CBS 351.68, CBS 936.68, ETH 24347, IFO 13203, ISP 5024, JCM 4214, JCM 4666, KCC S-0214, KCC S-0666, NBRC 13203, NIHJ 284, NRRL B-2517, RIA 1105, BCRC 13658, NRRL ISP-5024, VKM Ac-1004

[Ref.: #84710]

SI-ID 276648

References

#9224

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40024

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84710

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID276648.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces pyridomyceticus NRRL B-2517

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