Name: Kitasatospora papulosa DSM 41643
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15952

Type strain:

Species: Kitasatospora papulosa

Culture col. no.: DSM 41643, ATCC 49231, IAM 13637, IFO 14834, JCM 7250, NBRC 14834, NRRL B-16504

Strain history: Y. Nakamura AB-110.

NCBI tax ID(s): 1931 (species)

SI-ID 46871

ATCC 49231, JCM 7250, IAM 13637, DSM 41643, IFO 14834, NRRL B-16504, NBRC 14834, VKM Ac-2513

Section

Kitasatospora papulosa DSM 41643 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Kitasatospora*
	Species	"Kitasatospora papulosa"
	Full Scientific Name (LPSN)	Kitasatospora papulosa corrig. Nakamura et al. 1989

Synonym

"Kitasatosporia papulosa"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10420]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #10420]

Culture medium growth

[Ref.: #10420]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10420]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10420]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #10420]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #10420]

Name of produced compound

carbapenem antibiotic AB-110-D

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		carbapenem ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10420]	Sample type/isolated from	soil
[Ref.: #10420]	Geographic location (country and/or sea, region)	Yokohama City
[Ref.: #10420]	Country	Japan
[Ref.: #10420]	Country ISO 3 Code	JPN
[Ref.: #10420]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yokohama City
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U93338 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces sp. JCM 7250 16S ribosomal RNA gene, partial sequence	U93338	1484	ENA	1464011 tax ID	*
[Ref.: #20218]	Streptomyces sp. JCM 7250 16S-23S ribosomal RNA internal spacer, partial sequence	U93339	299	ENA	1464011 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	[Kitasatospora] papulosa NRRL B-16504	GCA_000717245	contig	GenBank	1464011 tax ID

[Ref.: #67770]	GC-content	70.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	72 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: [Kitasatospora] papulosa NRRL B-16504 NCBI: GCA_000717245.1
[Ref.: #69480]	motile	no	94.576	no
[Ref.: #69480]	flagellated	no	97.928	no
[Ref.: #69480]	gram-positive	yes	88.08	no
[Ref.: #69480]	anaerobic	no	99.087	no
[Ref.: #69480]	halophile	no	93.726	no
[Ref.: #69480]	spore-forming	yes	94.691	no
[Ref.: #69480]	thermophile	no	98.907	yes
[Ref.: #69480]	glucose-util	yes	90.21	no
[Ref.: #69480]	aerobic	yes	94.342	no
[Ref.: #69480]	glucose-ferment	no	88.091	no

Availability in culture collections External links

[Ref.: #10420]

Culture collection no.

DSM 41643, ATCC 49231, IAM 13637, IFO 14834, JCM 7250, NBRC 14834, NRRL B-16504

[Ref.: #85028]

SI-ID 46871

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces silvae sp. nov., isolated from forest soil.	Besaury L, Martinet L, Muhle E, Clermont D, Remond C	Int J Syst Evol Microbiol	10.1099/ijsem.0.005147	2021	*

References

#10420

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41643

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85028

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46871.1 )

* These data were automatically processed and therefore are not curated

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[Kitasatospora] papulosa NRRL B-16504

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