Name: Kitasatospora viridifaciens Bl-567201
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15644

Type strain:

Species: Kitasatospora viridifaciens

Strain Designation: Bl-567201

Culture col. no.: DSM 40239, AS 4.1850, ATCC 11989, CBS 238.61, CBS 653.72, IFO 13352, ISP 5239, JCM 4155, NBRC 13352, NCIB 8954, NRRL B-1679, RIA 1313, BCRC 12668, IFM 1200, IMET 42943, JCM 4853, KCTC 1086, LMG 5989, NCIMB 8954, VKM Ac-1013

Strain history: KCC S-0853 <-- IFO 13352 <-- SAJ <-- ISP 5239 <-- Bristol Labs.; BL 567201.

NCBI tax ID(s): 642496 (species)

SI-ID 5021

LMG 5989, ATCC 11989, DSM 40239, IFO 13352, IMET 42943, JCM 4155, JCM 4853, NCIB 8954, NRRL B-1679, CCRC 12668, NCIMB 8954, VKM Ac-1013, CBS 238.61, KCTC 1086, NBRC 13352, AS 4.1850, BCRC 12668, NCIM 2506, CGMCC 4.1850

Section

Kitasatospora viridifaciens Bl-567201 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Kitasatospora*
	Species	"Kitasatospora viridifaciens"
	Full Scientific Name (LPSN)	Kitasatospora viridifaciens Girard et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9398]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9398]

Culture medium growth

[Ref.: #9398]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9398]

Culture medium composition

expand / minimize

[Ref.: #9398]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9398]

Culture medium growth

[Ref.: #9398]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9398]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9398]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9398]	Name of produced compound	ayfactins A
[Ref.: #9398]	Name of produced compound	ayfactins B (heptaenic polyenes)
[Ref.: #9398]	Name of produced compound	7 chlortetracycline
[Ref.: #9398]	Name of produced compound	tetracycline
[Ref.: #20216]	Name of produced compound	Tetracycline
[Ref.: #20216]	Name of produced compound	7-Chlortetracycline
[Ref.: #20216]	Name of produced compound	Ayfactins A
[Ref.: #20216]	Name of produced compound	Ayfactins B
[Ref.: #67770]	Name of produced compound	ayfactins A and B (heptaenic polyenes)

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		chlortetracycline ChEBI	yes
[Ref.: #67770]		tetracycline ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9398]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ887953 (>99% sequence identity) for Streptomycetaceae from Microbeatlas

Aquatic Samples	173
Soil Samples	3325
Animal Samples	599
Plant Samples	121
Total Samples	4218

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces sp. DSM 40239 16S ribosomal RNA gene, partial sequence	FJ887953	1364	ENA	642496 tax ID	*
[Ref.: #20218]	Streptomyces viridifaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4155	D44020	120	ENA	48665 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces viridifaciens ATCC 11989	GCA_008704475	complete	GenBank	48665 tax ID	*
[Ref.: #66792]	Streptomyces viridifaciens DSM 40239	GCA_001888885	complete	GenBank	48665 tax ID	*
[Ref.: #66792]	Streptomyces viridifaciens strain ATCC 11989	48665.5	complete	PATRIC	48665 tax ID	*
[Ref.: #66792]	Streptomyces viridifaciens strain DSM 40239	48665.3	wgs	PATRIC	48665 tax ID	*

[Ref.: #67770]

GC-content

72.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces viridifaciens ATCC 11989 NCBI: GCA_008704475.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces viridifaciens ATCC 11989 NCBI: GCA_008704475.1
[Ref.: #69480]	flagellated	no	98.248	no
[Ref.: #69480]	gram-positive	yes	92.474	no
[Ref.: #69480]	anaerobic	no	99.033	no
[Ref.: #69480]	aerobic	yes	89.545	no
[Ref.: #69480]	halophile	no	95.298	no
[Ref.: #69480]	spore-forming	yes	93.057	no
[Ref.: #69480]	thermophile	no	97.32	yes
[Ref.: #69480]	glucose-util	yes	91.308	no
[Ref.: #69480]	motile	no	95.021	no
[Ref.: #69480]	glucose-ferment	no	91.231	no

Availability in culture collections External links

[Ref.: #9398]

Culture collection no.

DSM 40239, AS 4.1850, ATCC 11989, CBS 238.61, CBS 653.72, IFO 13352, ISP 5239, JCM 4155, NBRC 13352, NCIB 8954, NRRL B-1679, RIA 1313, BCRC 12668, IFM 1200, IMET 42943, JCM 4853, KCTC 1086, LMG 5989, NCIMB 8954, VKM Ac-1013

[Ref.: #84730]

SI-ID 5021

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome rearrangements and megaplasmid loss in the filamentous bacterium Kitasatospora viridifaciens are associated with protoplast formation and regeneration.	Ramijan K, Zhang Z, van Wezel GP, Claessen D	Antonie Van Leeuwenhoek	10.1007/s10482-020-01393-7	2020	*
Genetics	Genome Sequence of the Filamentous Actinomycete Kitasatospora viridifaciens.	Ramijan K, van Wezel GP, Claessen D	Genome Announc	10.1128/genomeA.01560-16	2017	*

References

#9398

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40239

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84730

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5021.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces viridifaciens ATCC 11989

Streptomyces viridifaciens ATCC 11989

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