Name: Streptomyces sp. 3008
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15620

Type strain:

Species: Streptomyces sp.

Strain Designation: 3008

Culture col. no.: DSM 747, FERM P-1545, NRRL 5741, JCM 4947, ATCC 29864, CBS 177.76, IFO 13869, IFO 14060, IMET 43677, NBRC 13869, NBRC 14060

Strain history: KCC S-0947 <-- NRRL 5741 <-- Sankyo Co., Ltd.; 3008 (SANK 66165).

NCBI tax ID(s): 1931 (species)

SI-ID 39768

ATCC 29864, IFO 13869, NRRL 5741, DSM 747, JCM 4947, IFO 14060, IMET 43677, CBS 177.76, NBRC 13869, NBRC 14060

Other strains from Streptomyces sp.

Section

Streptomyces sp. 3008 is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from Soil.

antibiotic compound production
Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Full Scientific Name (LPSN)	Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)

	Synonym	"Microechinospora"
	Synonym	Carbonactinospora
	Synonym	Actinosporangium
	Synonym	Actinopycnidium
	Synonym	Elytrosporangium
	Synonym	Streptoverticillium
	Synonym	Chainia
	Synonym	"Indiella"
	Synonym	Actinacidiphila
	Synonym	Kitasatoa
	Synonym	Microellobosporia

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #420]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #420]

Culture medium growth

[Ref.: #420]

Culture medium link

Medium recipe at MediaDive

[Ref.: #420]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #420]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #420]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #420]	Name of produced compound	cephemimycin
[Ref.: #20216]	Name of produced compound	Cephemimycin C
[Ref.: #20216]	Name of produced compound	Clavulacic acid
[Ref.: #67770]	Name of produced compound	antibiotic 3008 B

	Metabolite production	Metabolite	Production
[Ref.: #67770]		cephamycin C ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jumonjitoge, Chichibu, Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces jumonjinensis strain ATCC 29864 16S ribosomal RNA gene, partial sequence	AY999725	1448	ENA	1945 tax ID
[Ref.: #67770]	Streptomyces jumonjinensis gene for 16S rRNA, partial sequence, strain: NBRC 13869	AB184538	1483	ENA	1945 tax ID
[Ref.: #67770]	Streptomyces jumonjinensis gene for 16S rRNA	AB045863	1490	ENA	1945 tax ID
[Ref.: #20218]	Streptomyces jumonjinensis 16S ribosomal RNA gene, partial sequence	AF417596	356	ENA	1945 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces jumonjinensis NRRL 5741	GCA_009600885	scaffold	GenBank	1945 tax ID
[Ref.: #66792]	Streptomyces jumonjinensis strain NRRL 5741	1945.3	wgs	PATRIC	1945 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces jumonjinensis NRRL 5741 NCBI: GCA_009600885.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces jumonjinensis strain NRRL 5741 PATRIC: 1945.3
[Ref.: #69480]	motile	no	93.87	no
[Ref.: #69480]	gram-positive	yes	89.004	no
[Ref.: #69480]	anaerobic	no	99.161	no
[Ref.: #69480]	aerobic	yes	90.345	no
[Ref.: #69480]	halophile	no	93.44	no
[Ref.: #69480]	spore-forming	yes	93.19	no
[Ref.: #69480]	glucose-util	yes	88.681	no
[Ref.: #69480]	flagellated	no	97.355	no
[Ref.: #69480]	thermophile	no	98.385	yes
[Ref.: #69480]	glucose-ferment	no	88.146	no

Availability in culture collections External links

[Ref.: #420]

Culture collection no.

DSM 747, FERM P-1545, NRRL 5741, JCM 4947, ATCC 29864, CBS 177.76, IFO 13869, IFO 14060, IMET 43677, NBRC 13869, NBRC 14060

[Ref.: #84707]

SI-ID 39768

References

#420	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 747

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84707

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39768.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces jumonjinensis NRRL 5741

Streptomyces jumonjinensis strain NRRL 5741

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