Streptomyces sp. (DSM 747, FERM P-1545, NRRL 5741)

Name: Streptomyces sp. (DSM 747, FERM P-1545, NRRL 5741)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15620

Type strain

Strain Designation 3008

Culture col. no. DSM 747 FERM P-1545 NRRL 5741 3008 JCM 4947 7 more

NCBI tax ID(s) 1931

Special Collections DSMZ JCM

Links

3008 is a mesophilic prokaryote that produces antibiotic compounds and was isolated from Soil.

antibiotic compound production mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 39768

ATCC 29864,IFO 13869,NRRL 5741,DSM 747,JCM 4947,IFO 14060,IMET 43677,CBS 177.76,NBRC 13869,NBRC 14060

@ref 20215

Last LPSN update 2025-12-16 09:50:39

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Full scientific name Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)

Synonyms (10)

Streptoverticillium
"Microechinospora"
Carbonactinospora
Actinosporangium
Chainia
Kitasatoa
Actinopycnidium
Elytrosporangium
Actinacidiphila
Microellobosporia

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.6
125439		93.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
420	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
420	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.006
125439	obligate aerobe	93.4

Spore formation

@ref	Spore formation	Confidence
125439		96.3

Compound production

@ref	Compound
420	cephemimycin
20216	Cephemimycin C
20216	Clavulacic acid
67770	antibiotic 3008 B

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770	3543 ChEBI	cephamycin C

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Soil	Jumonjitoge, Chichibu, Saitama Pref.	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	ASM960088v1 assembly for Streptomyces jumonjinensis NRRL 5741	scaffold	GCA_009600885	1945.3	8023587708	1945

Genome browser: GCA_009600885

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces jumonjinensis 16S ribosomal RNA gene, partial sequence	AF417596	356	1945
67770	Streptomyces jumonjinensis gene for 16S rRNA	AB045863	1490	1945
67770	Streptomyces jumonjinensis gene for 16S rRNA, partial sequence, strain: NBRC 13869	AB184538	1483	1945
67770	Streptomyces jumonjinensis strain ATCC 29864 16S ribosomal RNA gene, partial sequence	AY999725	1448	1945

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces jumonjinensis NRRL 5741
NCBI: GCA_009600885

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	96.30	no
125439	motility	BacteriaNetⓘ	no	93.10	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces jumonjinensis strain NRRL 5741
PATRIC: 1945.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.67	no
125438	anaerobic	anaerobicⓘ	no	96.29	no
125438	spore-forming	spore-formingⓘ	yes	87.08	no
125438	aerobic	aerobicⓘ	yes	90.01	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Self-resistance in Streptomyces, with Special Reference to beta-Lactam Antibiotics.	Ogawara H.	Molecules	10.3390/molecules21050605	2016

References

#420	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 747
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Streptomyces sp. (DSM 747, FERM P-1545, NRRL 5741)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Metabolite production

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009600885

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media