Name: Streptomyces sp. DSM 40096
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15635

Type strain:

Species: Streptomyces sp.

Culture col. no.: DSM 40096, ATCC 19783, CBS 535.68, IFO 12794, ISP 5096, JCM 4145, JCM 4592, NBRC 12794, RIA 1062, RIA 528, ETH 7534, BCRC 13679, IFM 1077, IMET 40460, NCIMB 9630, NRRL B-2314

Strain history: KCC S-0145 <-- Y. Okami (NIHJ 176) <-- ETH 7534.

NCBI tax ID(s): 1931 (species)

SI-ID 45635

ATCC 19783, IFO 12794, DSM 40096, JCM 4145, JCM 4592, CCRC 13679, IMET 40460, NCIMB 9630, NRRL B-2314, CBS 535.68, CBS 415.59, NBRC 12794, BCRC 13679, ICMP 160, NCIB 9630

Other strains from Streptomyces sp.

Section

Streptomyces sp. DSM 40096 is a mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Full Scientific Name (LPSN)	Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)

	Synonym	"Microechinospora"
	Synonym	Carbonactinospora
	Synonym	Actinosporangium
	Synonym	Actinopycnidium
	Synonym	Elytrosporangium
	Synonym	Streptoverticillium
	Synonym	Chainia
	Synonym	"Indiella"
	Synonym	Actinacidiphila
	Synonym	Kitasatoa
	Synonym	Microellobosporia

Information on morphological and physiological properties Morphology

[Ref.: #69222]	Colony color	Ochre yellow ( 1024)
[Ref.: #69222]	Cultivation medium used	ISP 2

[Ref.: #69222]	Colony color	Ochre yellow ( 1024)
[Ref.: #69222]	Cultivation medium used	suter with tyrosine

[Ref.: #69222]	Colony color	Ochre yellow ( 1024)
[Ref.: #69222]	Cultivation medium used	suter without tyrosine

[Ref.: #69222]	Colony color	Ochre yellow (1024), ivory (1014)
[Ref.: #69222]	Cultivation medium used	ISP 6

[Ref.: #69222]	Colony color	Ochre yellow (1024), pale brown (8025)
[Ref.: #69222]	Cultivation medium used	ISP 3

[Ref.: #69222]	Colony color	Sand yellow (1002)
[Ref.: #69222]	Cultivation medium used	ISP 4

[Ref.: #69222]	Colony color	Sand yellow (1002)
[Ref.: #69222]	Cultivation medium used	ISP 5

[Ref.: #69222]	Colony color	Sand yellow (1002), khaki grey (7008)
[Ref.: #69222]	Cultivation medium used	ISP 7

[Ref.: #69222]	Pigment production	yes
[Ref.: #69222]	Pigment name	Melanin
[Ref.: #69222]	Pigment production	yes
[Ref.: #69222]	Pigmentation color	Sand yellow (1002)
[Ref.: #69222]	Pigment name	soluble pigment

[Ref.: #69222]	Multicellular complex forming ability	yes
[Ref.: #69222]	Multicellular complex name	Aerial mycelium
[Ref.: #69222]	Multicellular complex color	Traffic white (9016)
[Ref.: #69222]	Medium Name (multicellularity)	ISP 2

[Ref.: #69222]	Multicellular complex forming ability	yes
[Ref.: #69222]	Multicellular complex name	Aerial mycelium
[Ref.: #69222]	Multicellular complex color	Traffic white (9016), silver grey (7044)
[Ref.: #69222]	Medium Name (multicellularity)	ISP 3

[Ref.: #69222]	Multicellular complex forming ability	yes
[Ref.: #69222]	Multicellular complex name	Aerial mycelium
[Ref.: #69222]	Multicellular complex color	Pure white (9010), dusty grey (7037)
[Ref.: #69222]	Medium Name (multicellularity)	ISP 4

[Ref.: #69222]	Multicellular complex forming ability	yes
[Ref.: #69222]	Multicellular complex name	Aerial mycelium
[Ref.: #69222]	Multicellular complex color	Traffic white (9016)
[Ref.: #69222]	Medium Name (multicellularity)	ISP 5

[Ref.: #69222]	Multicellular complex forming ability	yes
[Ref.: #69222]	Multicellular complex name	Aerial mycelium
[Ref.: #69222]	Multicellular complex color	Traffic white (9016)
[Ref.: #69222]	Medium Name (multicellularity)	ISP 6

[Ref.: #69222]	Multicellular complex forming ability	yes
[Ref.: #69222]	Multicellular complex name	Aerial mycelium
[Ref.: #69222]	Multicellular complex color	Pure white (9010), moss grey (7003)
[Ref.: #69222]	Medium Name (multicellularity)	ISP 7

[Ref.: #69222]	Multicellular complex forming ability	yes
[Ref.: #69222]	Multicellular complex name	Aerial mycelium
[Ref.: #69222]	Multicellular complex color	Traffic white (9016)
[Ref.: #69222]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69222]	Multicellular complex forming ability	yes
[Ref.: #69222]	Multicellular complex name	Aerial mycelium
[Ref.: #69222]	Multicellular complex color	Traffic white (9016)
[Ref.: #69222]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69222]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69222]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69222]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69222]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9308]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9308]

Culture medium growth

[Ref.: #9308]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9308]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9308]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9308]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9308]	Name of produced compound	magnamycin
[Ref.: #20216]	Name of produced compound	Carbomycin A (Magnamycin, Antibiotic M4209)

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69222]		NaCl		growth	0-2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69222]	arabinose ChEBI	+	growth
[Ref.: #69222]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69222]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69222]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69222]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69222]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #69222]	raffinose ChEBI	-	growth
[Ref.: #69222]	rhamnose ChEBI	+	growth
[Ref.: #69222]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69222]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67770]		carbomycin	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69222]	3716	+	-	-	+	-	+	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69222]	5900	not determinedn.d.	+	+/-	+	+/-	+	+/-	+/-	-	-	+	+	+/-	+	-	+/-	-	+/-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9308]	Sample type/isolated from	soil
[Ref.: #9308]	Geographic location (country and/or sea, region)	Madras
[Ref.: #9308]	Country	India
[Ref.: #9308]	Country ISO 3 Code	IND
[Ref.: #9308]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Madras
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces macrosporeus gene for 16S rRNA, partial sequence, strain: NBRC 12794	AB184151	1430	ENA	68236 tax ID	*
[Ref.: #20218]	Streptomyces macrosporeus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4145	D44015	120	ENA	68236 tax ID	*

Availability in culture collections External links

[Ref.: #9308]

Culture collection no.

DSM 40096, ATCC 19783, CBS 535.68, IFO 12794, ISP 5096, JCM 4145, JCM 4592, NBRC 12794, RIA 1062, RIA 528, ETH 7534, BCRC 13679, IFM 1077, IMET 40460, NCIMB 9630, NRRL B-2314

[Ref.: #84721]

SI-ID 45635

References

#9308

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40096

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69222

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#84721

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45635.1 )

* These data were automatically processed and therefore are not curated

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