Strain identifier

BacDive ID: 15633

Type strain: No

Species: Streptomyces sp.

Strain history: CIP <- 1997, IFO <- 1969, SAJ <- OWU

NCBI tax ID(s): 82638 (species)

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General

@ref: 9291

BacDive-ID: 15633

DSM-Number: 40078

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-positive, filament-shaped

description: Streptomyces sp. DSM 40078 is an obligate aerobe, Gram-positive, filament-shaped bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 82638
  • Matching level: species

strain history

@refhistory
9291<- E.B. Shirling, ISP <- S.A. Waksman, IMRU
122498CIP <- 1997, IFO <- 1969, SAJ <- OWU

doi: 10.13145/bacdive15633.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces sp.
  • full scientific name: Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Microechinospora
    20215Carbonactinospora
    20215Actinosporangium
    20215Actinopycnidium
    20215Elytrosporangium
    20215Streptoverticillium
    20215Chainia
    20215Indiella
    20215Actinacidiphila
    20215Kitasatoa
    20215Microellobosporia

@ref: 9291

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces sp.

full scientific name: Streptomyces sp.

type strain: no

Morphology

cell morphology

  • @ref: 122498
  • gram stain: positive
  • cell shape: filament-shaped
  • motility: no

colony morphology

  • @ref: 122498

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9291GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
36884MEDIUM 122 - for StreptomycesyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (2.000 g);Starch maize (10.000 g)
122498CIP Medium 122yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=122
122498CIP Medium 127yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=127

culture temp

@refgrowthtypetemperature
9291positivegrowth28
36884positivegrowth30
122498positivegrowth25-30
122498nogrowth10
122498nogrowth37
122498nogrowth41
122498nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 122498
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
122498NaClpositivegrowth0-4 %
122498NaClnogrowth6 %
122498NaClnogrowth8 %
122498NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12249816947citrate-carbon source
1224984853esculin+hydrolysis
122498606565hippurate+hydrolysis
12249817632nitrate-reduction
12249816301nitrite-reduction
12249817632nitrate-respiration

antibiotic resistance

  • @ref: 122498
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 122498
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12249815688acetoin-
12249817234glucose-

enzymes

@refvalueactivityec
122498oxidase-
122498beta-galactosidase+3.2.1.23
122498alcohol dehydrogenase-1.1.1.1
122498gelatinase+
122498amylase+
122498DNase-
122498caseinase+3.4.21.50
122498catalase+1.11.1.6
122498tween esterase-
122498gamma-glutamyltransferase+2.3.2.2
122498lecithinase-
122498lipase-
122498lysine decarboxylase-4.1.1.18
122498ornithine decarboxylase-4.1.1.17
122498phenylalanine ammonia-lyase-4.3.1.24
122498protease+
122498tryptophan deaminase-
122498urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122498-+++++-----+---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122498+++-+----+++---++-++++-+-------+-+---------+-----+---------++--------------+---++-----+-++++-+-----

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB301482
  • Sequence Identity:
  • Total samples: 4030
  • soil counts: 2441
  • aquatic counts: 286
  • animal counts: 1009
  • plant counts: 294

Safety information

risk assessment

  • @ref: 122498
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces scabiei gene for 16S ribosomal RNA, partial sequenceAB3014821483nuccore1930
20218Streptomyces sp. ISP5078 16S ribosomal RNA gene, partial sequenceAF038636383nuccore74597
20218Streptomyces sp. ATCC 23962 16S ribosomal RNA gene, partial sequenceAF091229335nuccore82638

External links

@ref: 9291

culture collection no.: DSM 40078, ATCC 23962, CBS 945.68, IFO 12914, IMRU 3018, ISP 5078, JCM 4417, NBRC 12914, RIA 1120, CIP 105125

straininfo link

  • @ref: 84719
  • straininfo: 49707

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9291Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40078)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40078
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36884Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17110
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84719Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49707.1StrainInfo: A central database for resolving microbial strain identifiers
122498Curators of the CIPCollection of Institut Pasteur (CIP 105125)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105125