Strain identifier

BacDive ID: 131999

Type strain: No

Species: Streptomyces sp.

Strain Designation: Root66D1

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root66D1 <- Y. Bai

NCBI tax ID(s): 1931 (species)

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General

@ref: 23791

BacDive-ID: 131999

DSM-Number: 102552

keywords: genome sequence, Bacteria, mesophilic

description: Streptomyces sp. Root66D1 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

  • NCBI tax id: 1931
  • Matching level: species

strain history

  • @ref: 23791
  • history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root66D1 <- Y. Bai

doi: 10.13145/bacdive131999.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces sp.
  • full scientific name: Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Microechinospora
    20215Carbonactinospora
    20215Actinosporangium
    20215Actinopycnidium
    20215Elytrosporangium
    20215Streptoverticillium
    20215Chainia
    20215Indiella
    20215Actinacidiphila
    20215Kitasatoa
    20215Microellobosporia

@ref: 23791

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces sp.

full scientific name: Streptomyces sp.

strain designation: Root66D1

type strain: no

Morphology

multimedia

  • @ref: 23791
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102552.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 23791
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 23791
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23791
  • sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
  • host species: Arabidopsis thaliana
  • geographic location: Cologne (50.958N 6.856E)
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 50.958
  • longitude: 6.856

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces sp. Root66D1GCA_001427745scaffoldncbi1736582
66792Streptomyces sp. Root66D11736582.3wgspatric1736582
66792Streptomyces sp. Root66D12643221587draftimg1736582

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.296no
gram-positiveyes88.038no
anaerobicno99.308no
aerobicyes91.485no
halophileno96.041no
spore-formingyes93.769no
thermophileno98.74no
glucose-utilyes89.56no
motileno94.733no
glucose-fermentno88.125no

External links

@ref: 23791

culture collection no.: DSM 102552

straininfo link

  • @ref: 90385
  • straininfo: 400666

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23791Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102552Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102552)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90385Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400666.1