Name: Bacillus sp. Root239
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131644

Type strain:

Species: Bacillus sp.

Strain Designation: Root239

Culture col. no.: DSM 102375

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root239 <- Y. Bai

NCBI tax ID(s): 1409 (species)

Special Collections

Other strains from Bacillus sp.

Section

Bacillus sp. Root239 is a spore-forming bacterium that was isolated from Roots of Arabidopsis thaliana .

spore-forming
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Full Scientific Name (LPSN)	Bacillus Cohn 1872 (Approved Lists 1980)

	Synonym	"Quasibacillus"
	Synonym	"Pseudobacillus"
	Synonym	"Maribacillus"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23440]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #23440]

Culture medium growth

[Ref.: #23440]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23440]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23440]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23440]	Sample type/isolated from	Roots of Arabidopsis thaliana (ecotype Shakdara)
[Ref.: #23440]	Host species	Arabidopsis thaliana
[Ref.: #23440]	Geographic location (country and/or sea, region)	Potsdam, Golm district (52.416N 12.968E)
[Ref.: #23440]	Country	Germany
[Ref.: #23440]	Country ISO 3 Code	DEU
[Ref.: #23440]	Continent	Europe
[Ref.: #23440]	Geographic location	52.4160°/12.9680°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus sp. Root239	GCA_001429385	scaffold	GenBank ENA	1736499 tax ID	*
[Ref.: #66792]	Bacillus sp. Root239	1736499.3	wgs	PATRIC	1736499 tax ID	*
[Ref.: #66792]	Bacillus sp. Root239	2643221732	draft	JGI IMG/M	1736499 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus sp. Root239 Root239 NCBI: GCA_001429385.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	82.908	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.844	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	73.422	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.414	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.504	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	81.476	no

Availability in culture collections External links

[Ref.: #23440]

Culture collection no.

DSM 102375

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23440

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102375

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Bacillus sp. Root239 Root239

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