Bacillus sp. (DSM 102575, Leaf406)

Name: Bacillus sp. (DSM 102575, Leaf406)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131647

Type strain

Strain Designation Leaf406

Culture col. no. DSM 102575 Leaf406

NCBI tax ID(s) 83428

Special Collections DSMZ Arabidopsis

Leaf406 is a mesophilic prokaryote that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

mesophilic genome sequence

Name and taxonomic classification

Culture Collection Numbers

DSM 102575 Leaf406

@ref 20215

Last LPSN update 2025-12-16 10:01:18

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Full scientific name Bacillus Cohn 1872 (Approved Lists 1980)

Synonyms (4)

Niallia
"Quasibacillus"
Weizmannia
"Maribacillus"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23443	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23443	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		94.359

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23443	leaf of Arabidopsis thaliana, wild-type genotype	Arabidopsis thaliana	Brugg (47.4816806N 8.217547222E)	Switzerland	CHE	Europe	47.4816	8.2175 47.4816/8.2175

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Leaf406 assembly for Bacillus sp. Leaf406	contig	GCA_001426105	1736368.3	2643221959	1736368	51.86

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus sp. Leaf406
NCBI: GCA_001426105

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.90	no
125439	motility	BacteriaNetⓘ	yes	81.40	no
125439	gram_stain	BacteriaNetⓘ	variable	83.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	73.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus sp. Leaf406
PATRIC: 1736368.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.53	no
125438	anaerobic	anaerobicⓘ	no	92.28	no
125438	spore-forming	spore-formingⓘ	yes	94.36	no
125438	aerobic	aerobicⓘ	yes	81.70	no
125438	thermophilic	thermophileⓘ	no	92.35	no
125438	flagellated	motile2+ⓘ	yes	86.83	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23443	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102575
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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