Bacillus sp. (DSM 28582, CSUR P977, B-jedd)

Name: Bacillus sp. (DSM 28582, CSUR P977, B-jedd)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169176

Type strain

Strain Designation B-jedd

Culture col. no. DSM 28582 CSUR P977 B-jedd

NCBI tax ID(s) 83428

Special Collections Cadoret human gut DSMZ

History <- S. Khelaifia, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; CSUR P977

Links

B-jedd is a bacterium that was isolated from human faeces.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 403413

DSM 28582

@ref 20215

Last LPSN update 2026-02-09 11:40:59

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Full scientific name Bacillus Cohn 1872 (Approved Lists 1980)

Synonyms (4)

Niallia
"Quasibacillus"
Weizmannia
"Maribacillus"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68413	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (MERCK 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
68413	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		91.123
125439		92.3

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
68413	human faeces	Saudi Arabia	SAU	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	PRJEB5955_assembly_1 assembly for Bacillus sp. B-jedd	contig	GCA_000821085	1476857.3	2627854039	1476857	75.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus sp. B-jedd
NCBI: GCA_000821085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.30	no
125439	motility	BacteriaNetⓘ	yes	81.10	no
125439	gram_stain	BacteriaNetⓘ	variable	84.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	72.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus sp. B-jedd
PATRIC: 1476857.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	74.97	no
125438	anaerobic	anaerobicⓘ	no	91.01	no
125438	spore-forming	spore-formingⓘ	yes	91.12	no
125438	aerobic	aerobicⓘ	yes	59.98	no
125438	thermophilic	thermophileⓘ	no	92.50	yes
125438	flagellated	motile2+ⓘ	yes	79.46	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68413	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28582
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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